component/pandas,numpy,scipy,statsmodel: version up

Co-authored-by: Boxiang Sun <boxiang.sun@nexedi.com>

component/cython/buildout.cfg

@@ -2,5 +2,6 @@
 parts = cython
 
 [cython]
-recipe = zc.recipe.egg:custom
+recipe = zc.recipe.egg
 egg = cython
+scripts = cython cythonize

component/numpy/buildout.cfg

 [buildout]
 extends =
   ../cython/buildout.cfg
+  ../meson/buildout.cfg
+  ../ninja/buildout.cfg
   ../macros/macro.pythonpath.eggs.cfg
+  ../openblas/buildout.cfg
+  ../pkgconfig/buildout.cfg
 parts = numpy
 
 [numpy-env]
 BLAS=None
 LAPACK=None
 ATLAS=None
+PATH=${ninja:location}/bin:${pkgconfig:location}/bin:${buildout:bin-directory}:${meson:location}/bin:%(PATH)s
+PKG_CONFIG_PATH = ${openblas:location}/lib/pkgconfig
 
 [numpy]
 recipe = zc.recipe.egg:custom
@@ -15,13 +21,23 @@ egg = numpy
 environment = numpy-env
 depends = ${numpy-pythonpath:recipe}
 
+[numpy-eggs]
+recipe = zc.recipe.egg
+eggs =
+  packaging
+  pyproject_metadata
+  meson-python
+
 [numpy-pythonpath]
 <= macro.pythonpath.eggs
 environment = numpy-env
-eggs = ${cython:egg}
+eggs =
+  ${cython:egg}
+  setuptools
+  ${numpy-eggs:eggs}
 
 [versions]
-numpy = 1.24.4
+numpy = 1.26.4
 
 [numpy:sys.version_info < (3,8)]
 depends =

component/pandas/buildout.cfg

@@ -16,9 +16,13 @@ environment = pandas-env
 setup-eggs =
   ${numpy:egg}
   ${cython:egg}
+  meson-python
+  pythran
+  pybind11
+  versioneer
 
 [versions]
-pandas = 1.4.0
+pandas = 2.2.3
 
 [pandas:sys.version_info < (3,8)]
 setup-eggs =

component/scipy/buildout.cfg

@@ -40,7 +40,6 @@ depends = ${scipy-setup-eggs:recipe}
 [scipy-setup-eggs]
 recipe = zc.recipe.egg
 scripts =
-  cython
   pythran
 eggs =
   ${cython:egg}
@@ -53,12 +52,9 @@ eggs =
 [versions]
 pybind11 = 2.11.1
 scipy = 1.12.0
-meson-python = 0.13.2:whl
-pyproject-metadata = 0.8.0:whl
-meson = 1.4.1
 beniget = 0.4.1
 gast = 0.5.3
-pythran = 0.16.0:whl
+
 
 [versions:sys.version_info < (3,11)]
 tomli = 2.0.1:whl

component/statsmodels/buildout.cfg

@@ -20,7 +20,8 @@ setup-eggs =
   ${scipy:egg}
   ${cython:egg}
   setuptools-dso
-statsmodels-patches = ${:_profile_base_location_}/statsmodels-add-setup-version.patch#8bb8eac7375e13fa8104a6aa905ef35c
+  packaging
+statsmodels-patches = ${:_profile_base_location_}/statsmodels-add-setup-version.patch#226a03ae31d060583fa21d425e6a81b6
 statsmodels-patch-options = -p1
 
 [statsmodels:sys.version_info < (3,10)]

component/statsmodels/statsmodels-add-setup-version.patch

@@ -2,20 +2,20 @@ add a version to make this package compatible with buildout's easy_install
 
 Fixes this issue:
 
-    Installing statsmodels 0.13.5
+    Installing statsmodels 0.14.4
     Caused installation of a distribution:
     statsmodels 0.0.0
     with a different version.
 
 
-diff '--color=auto' -ru statsmodels-0.13.5.orig/setup.py statsmodels-0.13.5/setup.py
---- statsmodels-0.13.5.orig/setup.py	2022-11-02 01:54:20.000000000 +0900
-+++ statsmodels-0.13.5/setup.py	2023-10-26 14:12:35.157708043 +0900
-@@ -387,6 +387,7 @@
+diff -ruN statsmodels-0.14.4.orig/setup.py statsmodels-0.14.4/setup.py
+--- statsmodels-0.14.4.orig/setup.py	2025-01-24 09:27:54.995143777 +0100
++++ statsmodels-0.14.4/setup.py	2025-01-24 09:29:14.175103580 +0100
+@@ -349,6 +349,7 @@
  
  setup(
      name=DISTNAME,
-+    version='0.13.5',
++    version='0.14.4',
      maintainer=MAINTAINER,
      ext_modules=extensions,
      maintainer_email=MAINTAINER_EMAIL,

stack/slapos.cfg

@@ -276,6 +276,8 @@ MarkupSafe = 2.1.3
 matplotlib = 2.1.2
 matplotlib-inline = 0.1.6:whl
 meld3 = 1.0.2
+meson = 1.7.0
+meson-python = 0.17.1:whl
 miniupnpc = 2.2.8
 mistune = 0.8.4
 mock = 3.0.5
@@ -301,7 +303,7 @@ parso = 0.7.1
 passlib = 1.7.4
 pathlib2 = 2.3.5
 pathspec = 0.12.1:whl
-patsy = 0.5.3
+patsy = 0.5.6
 pbr = 5.9.0
 pexpect = 4.8.0
 pickleshare = 0.7.4
@@ -332,6 +334,7 @@ Pygments = 2.9.0
 PyNaCl = 1.3.0
 pyOpenSSL = 19.1.0
 pyparsing = 3.1.1:whl
+pyproject-metadata = 0.8.0:whl
 pyroute2 = 0.6.9
 pyrsistent = 0.18.1
 PyRSS2Gen = 1.1
@@ -339,6 +342,7 @@ PySocks = 1.7.1
 pytest-runner = 5.2:whl
 python-dateutil = 2.8.2:whl
 python-json-logger = 2.0.7
+pythran = 0.16.0:whl
 pytz = 2022.2.1
 PyYAML = 6.0.2
 pyzmq = 24.0.1
@@ -375,7 +379,7 @@ sniffio = 1.3.0
 sortedcontainers = 2.4.0
 soupsieve = 1.9.5
 stack-data = 0.6.3:whl
-statsmodels = 0.13.5+SlapOSPatched001
+statsmodels = 0.14.4+SlapOSPatched001
 stevedore = 1.21.0:whl
 subprocess32 = 3.5.4
 supervisor = 4.1.0
@@ -394,12 +398,14 @@ Twisted = 22.4.0:whl
 txaio = 23.1.1
 typeguard = 3.0.2:whl
 typing-extensions = 4.8.0:whl
+tzdata = 2025.1
 tzlocal = 1.5.1
 unicodecsv = 0.14.1
 unshare = 0.22
 uri-template = 1.2.0
 uritemplate = 4.1.1
 urllib3 = 1.26.12
+versioneer = 0.29
 wcwidth = 0.2.5
 webcolors = 1.12
 webencodings = 0.5.1
@@ -425,6 +431,9 @@ zope.interface = 7.1.1
 zope.testing = 5.0.1
 zope.testrunner = 6.6
 
+[versions:sys.version_info < (3,11)]
+versioneer = 0.24
+
 [versions:sys.version_info < (3,10)]
 # keep old statsmodels by default until slapos.toolbox is updated
 # this statsmodels need an old cython