Commit 43d8bdb4 introduced additional
checks for permissions to read issue in references extractor.

* master: (121 commits)
  Dedupe labels in labels selector in Dashboard pages
  Refactor colors and lists
  Add a safeguard in MergeRequest#compute_diverged_commits_count
  Fix an issue when the target branch of a MR had been deleted
  Add avatar to issue and MR pages header
  Cleanup somce css colors
  Re-group scss variables
  Refactor `Todo#target`
  Fixes issue with filter label missing on labels & milestones
  Rename `Todo#to_reference` to `Todo#target_reference`
  Fixed failing tests
  Updated controller with before_action Fixed other issues based on feedback
  Fixes issue on dashboard issues
  Full labels data in JSON
  Fixed issue with labels dropdown getting wrong labels
  Update CHANGELOG
  Use `Note#for_project_snippet?` to skip notes on project snippet
  Use `Commit#short_id` instead of `Commit.truncate_sha`
  Reuse `for_commit?` on conditional validations
  Update schema info comment on todo related files
  ...

Conflicts:
	app/models/issue.rb
	db/schema.rb
	spec/models/issue_spec.rb

According to endbosses' suggestions.

Add information about `image` and `services` field at `job` level in the `.gitlab-ci.yml` documentation

Fixes #14366

/cc @tmaczukin @ayufan @axil

See merge request !3277

Dedupe labels in labels selector in Dashboard pages

Fixes #14418.

See merge request !3311

Also moved useless helper methods and directly to the
DashboardController.

Do not retry "git gc"

To prevent 'git gc' timing out on a large repo and then bouncing
around in the retry queue.

See merge request !3266

Fix an issue when the target branch of a MR had been deleted

Before displaying the "diverged commits" note, we're checking if the MR
is open, but we should check if it's mergeable instead because this
check ensure the source and target branches exist.

This was introduced by !2217 and fixes #14388.

See merge request !3294

Refactor colors and lists

* Introduce 2 color links: black and blue
* Use black color link for UI elements like lists
* Refactor lists to use .title nested under li
* Make all lists (events, todos, activity, projects etc) use style
* List colorschema is now 333 for links and 555 for text
Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

cc @jschatz1 @skyruler 

See merge request !3307

* Introduce 2 color links: black and blue
* Use black color link for UI elements like lists
* Refactor lists to use .title nested under li
* Make all lists (events, todos, activity, projects etc) use style
* List colorschema is now 333 for links and 555 for text
Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

We have to ensure source_sha and target_sha are not nil before calling
Gitlab::Git::Commit.between.

Before displaying the "diverged commits" note, we're checking if the MR
is open, but we should check if it's mergeable instead because this
check ensure the source and target branches exist.

This was introduced by !2217 and fixes #14388.

Add avatar to issue and MR pages header

closes #14395
# For Issues

### Before
![Screen_Shot_2016-03-18_at_4.27.25_PM](/uploads/b097c8e304c9737e2f46ee25667829bf/Screen_Shot_2016-03-18_at_4.27.25_PM.png)

### After
![Screen_Shot_2016-03-18_at_4.22.10_PM](/uploads/f7d2b12c9455950c2e660b33e27c1827/Screen_Shot_2016-03-18_at_4.22.10_PM.png)

# For Merge Request

### Before
![Screen_Shot_2016-03-18_at_4.27.09_PM](/uploads/50c7b6ee346f749f448647004ae6031b/Screen_Shot_2016-03-18_at_4.27.09_PM.png)

### After
![Screen_Shot_2016-03-18_at_4.24.17_PM](/uploads/abd37ccf030e0b6d10521a6937206de6/Screen_Shot_2016-03-18_at_4.24.17_PM.png)

See merge request !3301

Refactor variables

Fixes #13803 and other color inconsistency across application

cc @jschatz1 @skyruler 

See merge request !3304

Trigger a todo for mentions on commits page

Closes #14006 

* Screenshot:

![todo-commit](/uploads/5d34de0b7afcea7548123dafddf60c45/todo-commit.png)

See merge request !3262

Fixes issue with filter label missing on labels & milestones

Closes https://gitlab.com/gitlab-org/gitlab-ce/issues/14407

See merge request !3297

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

Prevent a 500 when a repository's root_ref is nil

Closes #14259

See merge request !3278

Since we're not actually returning a todo reference.

Dashboard labels

Previously because there were no JSON endpoint for labels or milestones
it was fetching HTML and parsing that. This is wrong.

It now fetches from a JSON endpoint.

This also fixes the dashboard/issues page not loading labels or
milestones as the path used to be only for a single project. So instead
I have created a endpoint for labels & milestones JSON on dashboard.

See merge request !3253

Fixed other issues based on feedback

They would try to load JSON from a project even though it isn't a single project

Fixes issue with close button not working on MR

Closes #14383

See merge request !3295