Commit f4cef2d9 authored by Richard's avatar Richard Committed by Vincent Bechu

Update Pyodide and and new libraries

/reviewed-on nexedi/erp5!741
parents 086285fa 3efde831
"""
Cycler
======
Cycling through combinations of values, producing dictionaries.
You can add cyclers::
from cycler import cycler
cc = (cycler(color=list('rgb')) +
cycler(linestyle=['-', '--', '-.']))
for d in cc:
print(d)
Results in::
{'color': 'r', 'linestyle': '-'}
{'color': 'g', 'linestyle': '--'}
{'color': 'b', 'linestyle': '-.'}
You can multiply cyclers::
from cycler import cycler
cc = (cycler(color=list('rgb')) *
cycler(linestyle=['-', '--', '-.']))
for d in cc:
print(d)
Results in::
{'color': 'r', 'linestyle': '-'}
{'color': 'r', 'linestyle': '--'}
{'color': 'r', 'linestyle': '-.'}
{'color': 'g', 'linestyle': '-'}
{'color': 'g', 'linestyle': '--'}
{'color': 'g', 'linestyle': '-.'}
{'color': 'b', 'linestyle': '-'}
{'color': 'b', 'linestyle': '--'}
{'color': 'b', 'linestyle': '-.'}
"""
from __future__ import (absolute_import, division, print_function,
unicode_literals)
import six
from itertools import product, cycle
from six.moves import zip, reduce
from operator import mul, add
import copy
__version__ = '0.10.0'
def _process_keys(left, right):
"""
Helper function to compose cycler keys
Parameters
----------
left, right : iterable of dictionaries or None
The cyclers to be composed
Returns
-------
keys : set
The keys in the composition of the two cyclers
"""
l_peek = next(iter(left)) if left is not None else {}
r_peek = next(iter(right)) if right is not None else {}
l_key = set(l_peek.keys())
r_key = set(r_peek.keys())
if l_key & r_key:
raise ValueError("Can not compose overlapping cycles")
return l_key | r_key
class Cycler(object):
"""
Composable cycles
This class has compositions methods:
``+``
for 'inner' products (zip)
``+=``
in-place ``+``
``*``
for outer products (itertools.product) and integer multiplication
``*=``
in-place ``*``
and supports basic slicing via ``[]``
Parameters
----------
left : Cycler or None
The 'left' cycler
right : Cycler or None
The 'right' cycler
op : func or None
Function which composes the 'left' and 'right' cyclers.
"""
def __call__(self):
return cycle(self)
def __init__(self, left, right=None, op=None):
"""Semi-private init
Do not use this directly, use `cycler` function instead.
"""
if isinstance(left, Cycler):
self._left = Cycler(left._left, left._right, left._op)
elif left is not None:
# Need to copy the dictionary or else that will be a residual
# mutable that could lead to strange errors
self._left = [copy.copy(v) for v in left]
else:
self._left = None
if isinstance(right, Cycler):
self._right = Cycler(right._left, right._right, right._op)
elif right is not None:
# Need to copy the dictionary or else that will be a residual
# mutable that could lead to strange errors
self._right = [copy.copy(v) for v in right]
else:
self._right = None
self._keys = _process_keys(self._left, self._right)
self._op = op
@property
def keys(self):
"""
The keys this Cycler knows about
"""
return set(self._keys)
def change_key(self, old, new):
"""
Change a key in this cycler to a new name.
Modification is performed in-place.
Does nothing if the old key is the same as the new key.
Raises a ValueError if the new key is already a key.
Raises a KeyError if the old key isn't a key.
"""
if old == new:
return
if new in self._keys:
raise ValueError("Can't replace %s with %s, %s is already a key" %
(old, new, new))
if old not in self._keys:
raise KeyError("Can't replace %s with %s, %s is not a key" %
(old, new, old))
self._keys.remove(old)
self._keys.add(new)
if self._right is not None and old in self._right.keys:
self._right.change_key(old, new)
# self._left should always be non-None
# if self._keys is non-empty.
elif isinstance(self._left, Cycler):
self._left.change_key(old, new)
else:
# It should be completely safe at this point to
# assume that the old key can be found in each
# iteration.
self._left = [{new: entry[old]} for entry in self._left]
def _compose(self):
"""
Compose the 'left' and 'right' components of this cycle
with the proper operation (zip or product as of now)
"""
for a, b in self._op(self._left, self._right):
out = dict()
out.update(a)
out.update(b)
yield out
@classmethod
def _from_iter(cls, label, itr):
"""
Class method to create 'base' Cycler objects
that do not have a 'right' or 'op' and for which
the 'left' object is not another Cycler.
Parameters
----------
label : str
The property key.
itr : iterable
Finite length iterable of the property values.
Returns
-------
cycler : Cycler
New 'base' `Cycler`
"""
ret = cls(None)
ret._left = list({label: v} for v in itr)
ret._keys = set([label])
return ret
def __getitem__(self, key):
# TODO : maybe add numpy style fancy slicing
if isinstance(key, slice):
trans = self.by_key()
return reduce(add, (_cycler(k, v[key])
for k, v in six.iteritems(trans)))
else:
raise ValueError("Can only use slices with Cycler.__getitem__")
def __iter__(self):
if self._right is None:
return iter(dict(l) for l in self._left)
return self._compose()
def __add__(self, other):
"""
Pair-wise combine two equal length cycles (zip)
Parameters
----------
other : Cycler
The second Cycler
"""
if len(self) != len(other):
raise ValueError("Can only add equal length cycles, "
"not {0} and {1}".format(len(self), len(other)))
return Cycler(self, other, zip)
def __mul__(self, other):
"""
Outer product of two cycles (`itertools.product`) or integer
multiplication.
Parameters
----------
other : Cycler or int
The second Cycler or integer
"""
if isinstance(other, Cycler):
return Cycler(self, other, product)
elif isinstance(other, int):
trans = self.by_key()
return reduce(add, (_cycler(k, v*other)
for k, v in six.iteritems(trans)))
else:
return NotImplemented
def __rmul__(self, other):
return self * other
def __len__(self):
op_dict = {zip: min, product: mul}
if self._right is None:
return len(self._left)
l_len = len(self._left)
r_len = len(self._right)
return op_dict[self._op](l_len, r_len)
def __iadd__(self, other):
"""
In-place pair-wise combine two equal length cycles (zip)
Parameters
----------
other : Cycler
The second Cycler
"""
if not isinstance(other, Cycler):
raise TypeError("Cannot += with a non-Cycler object")
# True shallow copy of self is fine since this is in-place
old_self = copy.copy(self)
self._keys = _process_keys(old_self, other)
self._left = old_self
self._op = zip
self._right = Cycler(other._left, other._right, other._op)
return self
def __imul__(self, other):
"""
In-place outer product of two cycles (`itertools.product`)
Parameters
----------
other : Cycler
The second Cycler
"""
if not isinstance(other, Cycler):
raise TypeError("Cannot *= with a non-Cycler object")
# True shallow copy of self is fine since this is in-place
old_self = copy.copy(self)
self._keys = _process_keys(old_self, other)
self._left = old_self
self._op = product
self._right = Cycler(other._left, other._right, other._op)
return self
def __eq__(self, other):
"""
Check equality
"""
if len(self) != len(other):
return False
if self.keys ^ other.keys:
return False
return all(a == b for a, b in zip(self, other))
def __repr__(self):
op_map = {zip: '+', product: '*'}
if self._right is None:
lab = self.keys.pop()
itr = list(v[lab] for v in self)
return "cycler({lab!r}, {itr!r})".format(lab=lab, itr=itr)
else:
op = op_map.get(self._op, '?')
msg = "({left!r} {op} {right!r})"
return msg.format(left=self._left, op=op, right=self._right)
def _repr_html_(self):
# an table showing the value of each key through a full cycle
output = "<table>"
sorted_keys = sorted(self.keys, key=repr)
for key in sorted_keys:
output += "<th>{key!r}</th>".format(key=key)
for d in iter(self):
output += "<tr>"
for k in sorted_keys:
output += "<td>{val!r}</td>".format(val=d[k])
output += "</tr>"
output += "</table>"
return output
def by_key(self):
"""Values by key
This returns the transposed values of the cycler. Iterating
over a `Cycler` yields dicts with a single value for each key,
this method returns a `dict` of `list` which are the values
for the given key.
The returned value can be used to create an equivalent `Cycler`
using only `+`.
Returns
-------
transpose : dict
dict of lists of the values for each key.
"""
# TODO : sort out if this is a bottle neck, if there is a better way
# and if we care.
keys = self.keys
# change this to dict comprehension when drop 2.6
out = dict((k, list()) for k in keys)
for d in self:
for k in keys:
out[k].append(d[k])
return out
# for back compatibility
_transpose = by_key
def simplify(self):
"""Simplify the Cycler
Returned as a composition using only sums (no multiplications)
Returns
-------
simple : Cycler
An equivalent cycler using only summation"""
# TODO: sort out if it is worth the effort to make sure this is
# balanced. Currently it is is
# (((a + b) + c) + d) vs
# ((a + b) + (c + d))
# I would believe that there is some performance implications
trans = self.by_key()
return reduce(add, (_cycler(k, v) for k, v in six.iteritems(trans)))
def concat(self, other):
"""Concatenate this cycler and an other.
The keys must match exactly.
This returns a single Cycler which is equivalent to
`itertools.chain(self, other)`
Examples
--------
>>> num = cycler('a', range(3))
>>> let = cycler('a', 'abc')
>>> num.concat(let)
cycler('a', [0, 1, 2, 'a', 'b', 'c'])
Parameters
----------
other : `Cycler`
The `Cycler` to concatenate to this one.
Returns
-------
ret : `Cycler`
The concatenated `Cycler`
"""
return concat(self, other)
def concat(left, right):
"""Concatenate two cyclers.
The keys must match exactly.
This returns a single Cycler which is equivalent to
`itertools.chain(left, right)`
Examples
--------
>>> num = cycler('a', range(3))
>>> let = cycler('a', 'abc')
>>> num.concat(let)
cycler('a', [0, 1, 2, 'a', 'b', 'c'])
Parameters
----------
left, right : `Cycler`
The two `Cycler` instances to concatenate
Returns
-------
ret : `Cycler`
The concatenated `Cycler`
"""
if left.keys != right.keys:
msg = '\n\t'.join(["Keys do not match:",
"Intersection: {both!r}",
"Disjoint: {just_one!r}"]).format(
both=left.keys & right.keys,
just_one=left.keys ^ right.keys)
raise ValueError(msg)
_l = left.by_key()
_r = right.by_key()
return reduce(add, (_cycler(k, _l[k] + _r[k]) for k in left.keys))
def cycler(*args, **kwargs):
"""
Create a new `Cycler` object from a single positional argument,
a pair of positional arguments, or the combination of keyword arguments.
cycler(arg)
cycler(label1=itr1[, label2=iter2[, ...]])
cycler(label, itr)
Form 1 simply copies a given `Cycler` object.
Form 2 composes a `Cycler` as an inner product of the
pairs of keyword arguments. In other words, all of the
iterables are cycled simultaneously, as if through zip().
Form 3 creates a `Cycler` from a label and an iterable.
This is useful for when the label cannot be a keyword argument
(e.g., an integer or a name that has a space in it).
Parameters
----------
arg : Cycler
Copy constructor for Cycler (does a shallow copy of iterables).
label : name
The property key. In the 2-arg form of the function,
the label can be any hashable object. In the keyword argument
form of the function, it must be a valid python identifier.
itr : iterable
Finite length iterable of the property values.
Can be a single-property `Cycler` that would
be like a key change, but as a shallow copy.
Returns
-------
cycler : Cycler
New `Cycler` for the given property
"""
if args and kwargs:
raise TypeError("cyl() can only accept positional OR keyword "
"arguments -- not both.")
if len(args) == 1:
if not isinstance(args[0], Cycler):
raise TypeError("If only one positional argument given, it must "
" be a Cycler instance.")
return Cycler(args[0])
elif len(args) == 2:
return _cycler(*args)
elif len(args) > 2:
raise TypeError("Only a single Cycler can be accepted as the lone "
"positional argument. Use keyword arguments instead.")
if kwargs:
return reduce(add, (_cycler(k, v) for k, v in six.iteritems(kwargs)))
raise TypeError("Must have at least a positional OR keyword arguments")
def _cycler(label, itr):
"""
Create a new `Cycler` object from a property name and
iterable of values.
Parameters
----------
label : hashable
The property key.
itr : iterable
Finite length iterable of the property values.
Returns
-------
cycler : Cycler
New `Cycler` for the given property
"""
if isinstance(itr, Cycler):
keys = itr.keys
if len(keys) != 1:
msg = "Can not create Cycler from a multi-property Cycler"
raise ValueError(msg)
lab = keys.pop()
# Doesn't need to be a new list because
# _from_iter() will be creating that new list anyway.
itr = (v[lab] for v in itr)
return Cycler._from_iter(label, itr)
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{"dependencies": {"matplotlib": ["cycler", "kiwisolver", "numpy", "pyparsing", "python-dateutil", "pytz"], "numpy": [], "pyparsing": [], "kiwisolver": [], "python-dateutil": [], "xlrd": [], "pandas": ["numpy", "python-dateutil", "pytz"], "cycler": [], "pytz": []}} {"dependencies": {"pytz": [], "python-dateutil": [], "pyparsing": [], "numpy": [], "matplotlib": ["cycler", "kiwisolver", "numpy", "pyparsing", "python-dateutil", "pytz"], "cycler": [], "kiwisolver": [], "pandas": ["numpy", "python-dateutil", "pytz"]}}
\ No newline at end of file \ No newline at end of file
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This source diff could not be displayed because it is too large. You can view the blob instead.
<?xml version="1.0"?>
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...@@ -6,6 +6,12 @@ ...@@ -6,6 +6,12 @@
</pickle> </pickle>
<pickle> <pickle>
<dictionary> <dictionary>
<item>
<key> <string>_Cacheable__manager_id</string> </key>
<value>
<none/>
</value>
</item>
<item> <item>
<key> <string>__name__</string> </key> <key> <string>__name__</string> </key>
<value> <string>pyodide.asm.data</string> </value> <value> <string>pyodide.asm.data</string> </value>
......
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...@@ -2,6 +2,12 @@ ...@@ -2,6 +2,12 @@
* The main bootstrap script for loading pyodide. * The main bootstrap script for loading pyodide.
*/ */
// Regexp for validating package name and URI
var package_name_regexp = '[a-z0-9_][a-z0-9_\-]*'
var package_uri_regexp =
new RegExp('^https?://.*?(' + package_name_regexp + ').js$', 'i');
var package_name_regexp = new RegExp('^' + package_name_regexp + '$', 'i');
var languagePluginLoader = new Promise((resolve, reject) => { var languagePluginLoader = new Promise((resolve, reject) => {
// This is filled in by the Makefile to be either a local file or the // This is filled in by the Makefile to be either a local file or the
// deployed location. TODO: This should be done in a less hacky // deployed location. TODO: This should be done in a less hacky
...@@ -11,20 +17,52 @@ var languagePluginLoader = new Promise((resolve, reject) => { ...@@ -11,20 +17,52 @@ var languagePluginLoader = new Promise((resolve, reject) => {
//////////////////////////////////////////////////////////// ////////////////////////////////////////////////////////////
// Package loading // Package loading
var packages = undefined; var packages = undefined;
let loadedPackages = new Set(); let loadedPackages = new Array();
let _uri_to_package_name = (package_uri) => {
// Generate a unique package name from URI
if (package_name_regexp.test(package_uri)) {
return package_uri;
} else if (package_uri_regexp.test(package_uri)) {
let match = package_uri_regexp.exec(package_uri);
// Get the regexp group corresponding to the package name
return match[1];
} else {
return null;
}
};
let loadPackage = (names) => { let loadPackage = (names) => {
// DFS to find all dependencies of the requested packages // DFS to find all dependencies of the requested packages
let packages = window.pyodide.packages.dependencies; let packages = window.pyodide.packages.dependencies;
let queue = new Array(names); let queue = new Array(names);
let toLoad = new Set(); let toLoad = new Array();
while (queue.length) { while (queue.length) {
const package = queue.pop(); let package_uri = queue.pop();
if (!loadedPackages.has(package)) {
toLoad.add(package); const package = _uri_to_package_name(package_uri);
if (package == null) {
throw new Error(`Invalid package name or URI '${package_uri}'`);
} else if (package == package_uri) {
package_uri = 'default channel';
}
console.log(`Loading ${package} from ${package_uri}`);
if (package in loadedPackages) {
if (package_uri != loadedPackages[package]) {
throw new Error(
`URI mismatch, attempting to load package ` +
`${package} from ${package_uri} while it is already ` +
`loaded from ${loadedPackages[package]}!`);
}
} else {
toLoad[package] = package_uri;
if (packages.hasOwnProperty(package)) { if (packages.hasOwnProperty(package)) {
packages[package].forEach((subpackage) => { packages[package].forEach((subpackage) => {
if (!loadedPackages.has(subpackage) && !toLoad.has(subpackage)) { if (!(subpackage in loadedPackages) && !(subpackage in toLoad)) {
queue.push(subpackage); queue.push(subpackage);
} }
}); });
...@@ -35,25 +73,32 @@ var languagePluginLoader = new Promise((resolve, reject) => { ...@@ -35,25 +73,32 @@ var languagePluginLoader = new Promise((resolve, reject) => {
} }
let promise = new Promise((resolve, reject) => { let promise = new Promise((resolve, reject) => {
if (toLoad.size === 0) { if (Object.keys(toLoad).length === 0) {
resolve('No new packages to load'); resolve('No new packages to load');
} }
pyodide.monitorRunDependencies = (n) => { pyodide.monitorRunDependencies = (n) => {
if (n === 0) { if (n === 0) {
toLoad.forEach((package) => loadedPackages.add(package)); for (let package in toLoad) {
loadedPackages[package] = toLoad[package];
}
delete pyodide.monitorRunDependencies; delete pyodide.monitorRunDependencies;
const packageList = Array.from(toLoad.keys()).join(', '); const packageList = Array.from(Object.keys(toLoad)).join(', ');
resolve(`Loaded ${packageList}`); resolve(`Loaded ${packageList}`);
} }
}; };
toLoad.forEach((package) => { for (let package in toLoad) {
let script = document.createElement('script'); let script = document.createElement('script');
let package_uri = toLoad[package];
if (package_uri == 'default channel') {
script.src = `${baseURL}${package}.js`; script.src = `${baseURL}${package}.js`;
} else {
script.src = `${package_uri}`;
}
script.onerror = (e) => { reject(e); }; script.onerror = (e) => { reject(e); };
document.body.appendChild(script); document.body.appendChild(script);
}); }
// We have to invalidate Python's import caches, or it won't // We have to invalidate Python's import caches, or it won't
// see the new files. This is done here so it happens in parallel // see the new files. This is done here so it happens in parallel
...@@ -117,6 +162,7 @@ var languagePluginLoader = new Promise((resolve, reject) => { ...@@ -117,6 +162,7 @@ var languagePluginLoader = new Promise((resolve, reject) => {
}; };
Module.filePackagePrefixURL = baseURL; Module.filePackagePrefixURL = baseURL;
Module.locateFile = (path) => baseURL + path;
var postRunPromise = new Promise((resolve, reject) => { var postRunPromise = new Promise((resolve, reject) => {
Module.postRun = () => { Module.postRun = () => {
delete window.Module; delete window.Module;
......
"""
A library of helper utilities for connecting Python to the browser environment.
"""
from js import XMLHttpRequest
import ast
import io
def open_url(url):
"""
Fetches a given *url* and returns a io.StringIO to access its contents.
"""
req = XMLHttpRequest.new()
req.open('GET', url, False)
req.send(None)
return io.StringIO(req.response)
def eval_code(code, ns):
"""
Runs a string of code, the last part of which may be an expression.
"""
mod = ast.parse(code)
if isinstance(mod.body[-1], ast.Expr):
expr = ast.Expression(mod.body[-1].value)
del mod.body[-1]
else:
expr = None
if len(mod.body):
exec(compile(mod, '<exec>', mode='exec'), ns, ns)
if expr is not None:
return eval(compile(expr, '<eval>', mode='eval'), ns, ns)
else:
return None
__all__ = ['open_url', 'eval_code']
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<value> <string>pyodide.py</string> </value>
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<!DOCTYPE html>
<html>
<head>
<meta charset="UTF-8">
<title>Python - iodide</title>
<link rel="stylesheet" type="text/css" href="https://iodide.io/dist/iodide.pyodide-20180623.css">
</head>
<body>
<script id="jsmd" type="text/jsmd">
%% meta
{
"title": "Python",
"languages": {
"js": {
"pluginType": "language",
"languageId": "js",
"displayName": "Javascript",
"codeMirrorMode": "javascript",
"module": "window",
"evaluator": "eval",
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%% md
# Pyodide 🐍
Pyodide adds support for Python in an Iodide notebook, running inside your browser.
**This is early days. Everything here is subject to change.**
(A major shortcoming is that `print` from Python currently prints to the Javascript debugger console, rather than to the notebook cell, so some of these examples are more contrived than they need to be.)
**Also to note: If you have any issues, try disabling any ad or tracking blockers for this site.**
First, let's use a plugin cell to load the Python interpreter and tell Iodide about the new cell type.
%% plugin
{
"languageId": "py",
"displayName": "python",
"codeMirrorMode": "python",
"keybinding": "p",
"url": "https://iodide.io/pyodide-demo/pyodide.js",
"module": "pyodide",
"evaluator": "runPython",
"pluginType": "language"
}
%% md
## Make a Python cell. Import stuff and use it.
Most of the standard library (at least the parts that make sense) are here and available to use.
%% code {"language":"py"}
# python
import sys
sys.version
%% md
## Basic data types
The basic data types (None, bool, ints, floats, lists, and dicts) are converted from Python to Javascript when they are output and displayed using the standard mechanisms in Iodide.
%% code {"language":"py"}
[0, 1, 32.0, 'foo', {'a': 10, 'b': '20'}, b'bytes']
%% md
## Sharing objects between Python and Javascript
The Python and Javascript sides can pass objects back and forth.
So, you can set a value in Javascript code:
%% js
// javascript
secret = "Wklv#lv#olnh#pdjlf$"
%% md
...and use it from Python by using `from js import ...`:
%% code {"language":"py"}
# python
from js import secret
decoded = ''.join(chr(ord(x) - 3) for x in secret)
%% md
...and then get it back from Javascript using `pyodide.pyimport`:
%% js
// javascript
var decoded = pyodide.pyimport("decoded")
decoded
%% md
## Custom data types
Non-basic data types, such as class instances, functions, File objects etc., can also be passed between Python and Javascript.
### Using Python objects from Javascript
For example, say we had the following Python function that we wanted to call from Javascript:
%% code {"language":"py"}
# python
def square(x):
return x * x
%% md
Since calling conventions are a bit different in Python than in Javascript, all Python callables take two arguments when called from Javascript: the positional arguments as an array, and the keyword arguments as an object.
%% js
// javascript
var square = pyodide.pyimport("square")
square(2.5)
%% md
This is equivalent to the following Python syntax:
%% code {"language":"py"}
# python
square(2.5)
%% md
You can also get the attributes of objects in a similar way. Say we had an instance of the following Python custom class:
%% code {"language":"py"}
# python
class Foo:
def __init__(self, val):
self.val = val
foo = Foo(42)
foo
%% md
We can get the value of its `val` property as so:
%% js
// javascript
var foo = pyodide.pyimport("foo")
foo.val
%% md
### Using Javascript objects from Python
Likewise, you can use Javascript objects from Python.
%% js
// javascript
function square(x) {
return x*x;
}
%% md
To call this function from Python...
%% code {"language":"py"}
from js import square
square(4)
%% md
## Exceptions
Python exceptions are converted to Javascript exceptions, and they include tracebacks.
%% code {"language":"py"}
x = 5 / 0
%% md
## World DOMination
By using `from js import document`, you can easily access the Web API from Python.
For example, get the title of the document:
%% code {"language":"py"}
# python
from js import document
document.title
%% md
You can set it, too:
%% code {"language":"py"}
# python
document.title = 'My mind is blown'
%% md
We can set up a special `div` element from a markdown cell, and then manipulate it from Python.
<div id="targetDiv">This is a div we'll target from Python</div>
%% code {"language":"py"}
# python
# Turn the div red
document.getElementById("targetDiv").setAttribute("style", "background-color: red")
%% md
## Numpy
You bet, [Numpy](http://numpy.org) works.
To save on download times, isn't loaded by default. We need to manually use
the `pyodide.loadPackage` function from a Javascript cell.
%% js
pyodide.loadPackage('numpy')
%% md
Now that the Numpy package has been loaded (i.e. transferred to your local browser), we can import it:
%% code {"language":"py"}
import numpy as np
%% md
Let's make a simple array of zeros. When it's displayed, it's using the same output code that Iodide uses for Javascript.
(On a technical level, it's important to note that Pyodide doesn't need to copy the whole array over to the Javascript side to do this: it's only accessing the parts of the array it needs to make the display.)
%% code {"language":"py"}
np.zeros((16, 16))
%% md
### Estimating pi
Here's a fun example where we can estimate pi by generating a bunch of random (x, y) points and calculating the ratio of them that fall within the unit circle.
%% code {"language":"py"}
from numpy import random
points = (random.rand(1000, 2) * 2.0) - 1.0
%% code {"language":"py"}
x = points[:, 0]
y = points[:, 1]
inside_circle = (x*x + y*y) < 1.0
pi = (float(np.sum(inside_circle)) / float(len(points))) * 4.0
pi
%% md
## Coming soon..
A couple things that already work that will be coming to this example notebook soon...
- Pandas support
- Plotting using D3 from Python
%% js
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<value> <string></string> </value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
This source diff could not be displayed because it is too large. You can view the blob instead.
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="File" module="OFS.Image"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>__name__</string> </key>
<value> <string>xlrd.data</string> </value>
</item>
<item>
<key> <string>content_type</string> </key>
<value> <string>application/octet-stream</string> </value>
</item>
<item>
<key> <string>precondition</string> </key>
<value> <string></string> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string></string> </value>
</item>
</dictionary>
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var Module = typeof pyodide !== 'undefined' ? pyodide : {};
if (!Module.expectedDataFileDownloads) {
Module.expectedDataFileDownloads = 0;
Module.finishedDataFileDownloads = 0;
}
Module.expectedDataFileDownloads++;
(function() {
var loadPackage = function(metadata) {
var PACKAGE_PATH;
if (typeof window === 'object') {
PACKAGE_PATH = window['encodeURIComponent'](window.location.pathname.toString().substring(0, window.location.pathname.toString().lastIndexOf('/')) + '/');
} else if (typeof location !== 'undefined') {
// worker
PACKAGE_PATH = encodeURIComponent(location.pathname.toString().substring(0, location.pathname.toString().lastIndexOf('/')) + '/');
} else {
throw 'using preloaded data can only be done on a web page or in a web worker';
}
var PACKAGE_NAME = '/home/nexedir/pyodide/packages/xlrd/build/xlrd.data';
var REMOTE_PACKAGE_BASE = 'xlrd.data';
if (typeof Module['locateFilePackage'] === 'function' && !Module['locateFile']) {
Module['locateFile'] = Module['locateFilePackage'];
err('warning: you defined Module.locateFilePackage, that has been renamed to Module.locateFile (using your locateFilePackage for now)');
}
var REMOTE_PACKAGE_NAME = Module['locateFile'] ? Module['locateFile'](REMOTE_PACKAGE_BASE, '') : REMOTE_PACKAGE_BASE;
var REMOTE_PACKAGE_SIZE = metadata.remote_package_size;
var PACKAGE_UUID = metadata.package_uuid;
function fetchRemotePackage(packageName, packageSize, callback, errback) {
var xhr = new XMLHttpRequest();
xhr.open('GET', packageName, true);
xhr.responseType = 'arraybuffer';
xhr.onprogress = function(event) {
var url = packageName;
var size = packageSize;
if (event.total) size = event.total;
if (event.loaded) {
if (!xhr.addedTotal) {
xhr.addedTotal = true;
if (!Module.dataFileDownloads) Module.dataFileDownloads = {};
Module.dataFileDownloads[url] = {
loaded: event.loaded,
total: size
};
} else {
Module.dataFileDownloads[url].loaded = event.loaded;
}
var total = 0;
var loaded = 0;
var num = 0;
for (var download in Module.dataFileDownloads) {
var data = Module.dataFileDownloads[download];
total += data.total;
loaded += data.loaded;
num++;
}
total = Math.ceil(total * Module.expectedDataFileDownloads/num);
if (Module['setStatus']) Module['setStatus']('Downloading data... (' + loaded + '/' + total + ')');
} else if (!Module.dataFileDownloads) {
if (Module['setStatus']) Module['setStatus']('Downloading data...');
}
};
xhr.onerror = function(event) {
throw new Error("NetworkError for: " + packageName);
}
xhr.onload = function(event) {
if (xhr.status == 200 || xhr.status == 304 || xhr.status == 206 || (xhr.status == 0 && xhr.response)) { // file URLs can return 0
var packageData = xhr.response;
callback(packageData);
} else {
throw new Error(xhr.statusText + " : " + xhr.responseURL);
}
};
xhr.send(null);
};
function handleError(error) {
console.error('package error:', error);
};
var fetchedCallback = null;
var fetched = Module['getPreloadedPackage'] ? Module['getPreloadedPackage'](REMOTE_PACKAGE_NAME, REMOTE_PACKAGE_SIZE) : null;
if (!fetched) fetchRemotePackage(REMOTE_PACKAGE_NAME, REMOTE_PACKAGE_SIZE, function(data) {
if (fetchedCallback) {
fetchedCallback(data);
fetchedCallback = null;
} else {
fetched = data;
}
}, handleError);
function runWithFS() {
function assert(check, msg) {
if (!check) throw msg + new Error().stack;
}
Module['FS_createPath']('/', 'lib', true, true);
Module['FS_createPath']('/lib', 'python3.6', true, true);
Module['FS_createPath']('/lib/python3.6', 'site-packages', true, true);
Module['FS_createPath']('/lib/python3.6/site-packages', 'xlrd', true, true);
Module['FS_createPath']('/lib/python3.6/site-packages/xlrd', 'examples', true, true);
function DataRequest(start, end, audio) {
this.start = start;
this.end = end;
this.audio = audio;
}
DataRequest.prototype = {
requests: {},
open: function(mode, name) {
this.name = name;
this.requests[name] = this;
Module['addRunDependency']('fp ' + this.name);
},
send: function() {},
onload: function() {
var byteArray = this.byteArray.subarray(this.start, this.end);
this.finish(byteArray);
},
finish: function(byteArray) {
var that = this;
Module['FS_createPreloadedFile'](this.name, null, byteArray, true, true, function() {
Module['removeRunDependency']('fp ' + that.name);
}, function() {
if (that.audio) {
Module['removeRunDependency']('fp ' + that.name); // workaround for chromium bug 124926 (still no audio with this, but at least we don't hang)
} else {
err('Preloading file ' + that.name + ' failed');
}
}, false, true); // canOwn this data in the filesystem, it is a slide into the heap that will never change
this.requests[this.name] = null;
}
};
var files = metadata.files;
for (var i = 0; i < files.length; ++i) {
new DataRequest(files[i].start, files[i].end, files[i].audio).open('GET', files[i].filename);
}
function processPackageData(arrayBuffer) {
Module.finishedDataFileDownloads++;
assert(arrayBuffer, 'Loading data file failed.');
assert(arrayBuffer instanceof ArrayBuffer, 'bad input to processPackageData');
var byteArray = new Uint8Array(arrayBuffer);
var curr;
// copy the entire loaded file into a spot in the heap. Files will refer to slices in that. They cannot be freed though
// (we may be allocating before malloc is ready, during startup).
if (Module['SPLIT_MEMORY']) err('warning: you should run the file packager with --no-heap-copy when SPLIT_MEMORY is used, otherwise copying into the heap may fail due to the splitting');
var ptr = Module['getMemory'](byteArray.length);
Module['HEAPU8'].set(byteArray, ptr);
DataRequest.prototype.byteArray = Module['HEAPU8'].subarray(ptr, ptr+byteArray.length);
var files = metadata.files;
for (var i = 0; i < files.length; ++i) {
DataRequest.prototype.requests[files[i].filename].onload();
}
Module['removeRunDependency']('datafile_/home/nexedir/pyodide/packages/xlrd/build/xlrd.data');
};
Module['addRunDependency']('datafile_/home/nexedir/pyodide/packages/xlrd/build/xlrd.data');
if (!Module.preloadResults) Module.preloadResults = {};
Module.preloadResults[PACKAGE_NAME] = {fromCache: false};
if (fetched) {
processPackageData(fetched);
fetched = null;
} else {
fetchedCallback = processPackageData;
}
}
if (Module['calledRun']) {
runWithFS();
} else {
if (!Module['preRun']) Module['preRun'] = [];
Module["preRun"].push(runWithFS); // FS is not initialized yet, wait for it
}
}
loadPackage({"files": [{"start": 0, "audio": 0, "end": 1756, "filename": "/lib/python3.6/site-packages/xlrd/timemachine.py"}, {"start": 1756, "audio": 0, "end": 9698, "filename": "/lib/python3.6/site-packages/xlrd/xldate.py"}, {"start": 9698, "audio": 0, "end": 30673, "filename": "/lib/python3.6/site-packages/xlrd/compdoc.py"}, {"start": 30673, "audio": 0, "end": 87640, "filename": "/lib/python3.6/site-packages/xlrd/book.py"}, {"start": 87640, "audio": 0, "end": 93987, "filename": "/lib/python3.6/site-packages/xlrd/__init__.py"}, {"start": 93987, "audio": 0, "end": 188670, "filename": "/lib/python3.6/site-packages/xlrd/formula.py"}, {"start": 188670, "audio": 0, "end": 205350, "filename": "/lib/python3.6/site-packages/xlrd/biffh.py"}, {"start": 205350, "audio": 0, "end": 239529, "filename": "/lib/python3.6/site-packages/xlrd/xlsx.py"}, {"start": 239529, "audio": 0, "end": 239551, "filename": "/lib/python3.6/site-packages/xlrd/info.py"}, {"start": 239551, "audio": 0, "end": 345729, "filename": "/lib/python3.6/site-packages/xlrd/sheet.py"}, {"start": 345729, "audio": 0, "end": 390814, "filename": "/lib/python3.6/site-packages/xlrd/formatting.py"}, {"start": 390814, "audio": 0, "end": 397946, "filename": "/lib/python3.6/site-packages/xlrd/examples/xlrdnameAPIdemo.py"}, {"start": 397946, "audio": 0, "end": 420474, "filename": "/lib/python3.6/site-packages/xlrd/examples/namesdemo.xls"}], "remote_package_size": 420474, "package_uuid": "fee1cb8e-27fc-40c5-b7ba-c0fde67e1aad"});
})();
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="File" module="OFS.Image"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>__name__</string> </key>
<value> <string>xlrd.js</string> </value>
</item>
<item>
<key> <string>content_type</string> </key>
<value> <string>application/javascript</string> </value>
</item>
<item>
<key> <string>precondition</string> </key>
<value> <string></string> </value>
</item>
<item>
<key> <string>title</string> </key>
<value> <string></string> </value>
</item>
</dictionary>
</pickle>
</record>
</ZopeData>
...@@ -129,8 +129,29 @@ pyodide.asm.data.js\n ...@@ -129,8 +129,29 @@ pyodide.asm.data.js\n
pyodide.asm.js\n pyodide.asm.js\n
pyodide.asm.wasm\n pyodide.asm.wasm\n
pyodide.asm.data\n pyodide.asm.data\n
cycler.data\n
cycler.js\n
kiwisolver.data\n
kiwisolver.js\n
matplotlib.data\n
matplotlib.js\n
numpy.data\n
numpy.js\n
packages.json\n packages.json\n
pandas.data\n
pandas.js\n
pyodide.asm.html\n
pyodide.py\n
pyparsing.data\n
pyparsing.js\n
python-dateutil.data\n
python-dateutil.js\n
python.html\n
pytz.data\n
pytz.js\n
renderedhtml.css\n renderedhtml.css\n
xlrd.data\n
xlrd.js\n
\n \n
font-awesome/font-awesome.css\n font-awesome/font-awesome.css\n
font-awesome/font-awesome-webfont.eot\n font-awesome/font-awesome-webfont.eot\n
...@@ -373,7 +394,7 @@ NETWORK:\n ...@@ -373,7 +394,7 @@ NETWORK:\n
</item> </item>
<item> <item>
<key> <string>serial</string> </key> <key> <string>serial</string> </key>
<value> <string>969.50674.1572.7867</string> </value> <value> <string>969.57706.26709.14899</string> </value>
</item> </item>
<item> <item>
<key> <string>state</string> </key> <key> <string>state</string> </key>
...@@ -391,7 +412,7 @@ NETWORK:\n ...@@ -391,7 +412,7 @@ NETWORK:\n
</tuple> </tuple>
<state> <state>
<tuple> <tuple>
<float>1535021998.08</float> <float>1533713860.15</float>
<string>UTC</string> <string>UTC</string>
</tuple> </tuple>
</state> </state>
......
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