Merge branch 'master' into 'add-svg-loader'

# Conflicts:
#   app/assets/javascripts/vue_pipelines_index/pipeline_actions.js.es6

app/assets/javascripts/application.js

@@ -6,8 +6,6 @@
 /* global AwardsHandler */
 /* global Aside */
 
-function requireAll(context) { return context.keys().map(context); }
-
 window.$ = window.jQuery = require('jquery');
 require('jquery-ui/ui/draggable');
 require('jquery-ui/ui/sortable');
@@ -44,15 +42,176 @@ require('./shortcuts_dashboard_navigation');
 require('./shortcuts_issuable');
 require('./shortcuts_network');
 require('vendor/jquery.nicescroll');
-requireAll(require.context('./behaviors',  false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('./blob',       false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('./templates',  false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('./commit',     false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('./extensions', false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('./lib/utils',  false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('./u2f',        false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('./droplab',    false, /^\.\/.*\.(js|es6)$/));
-requireAll(require.context('.',            false, /^\.\/(?!application\.js).*\.(js|es6)$/));
+
+// behaviors
+require('./behaviors/autosize');
+require('./behaviors/details_behavior');
+require('./behaviors/quick_submit');
+require('./behaviors/requires_input');
+require('./behaviors/toggler_behavior');
+
+// blob
+require('./blob/blob_ci_yaml');
+require('./blob/blob_dockerfile_selector');
+require('./blob/blob_dockerfile_selectors');
+require('./blob/blob_file_dropzone');
+require('./blob/blob_gitignore_selector');
+require('./blob/blob_gitignore_selectors');
+require('./blob/blob_license_selector');
+require('./blob/blob_license_selectors');
+require('./blob/template_selector');
+
+// templates
+require('./templates/issuable_template_selector');
+require('./templates/issuable_template_selectors');
+
+// commit
+require('./commit/file.js');
+require('./commit/image_file.js');
+
+// extensions
+require('./extensions/array');
+require('./extensions/custom_event');
+require('./extensions/element');
+require('./extensions/jquery');
+require('./extensions/object');
+
+// lib/utils
+require('./lib/utils/animate');
+require('./lib/utils/bootstrap_linked_tabs');
+require('./lib/utils/common_utils');
+require('./lib/utils/datetime_utility');
+require('./lib/utils/notify');
+require('./lib/utils/pretty_time');
+require('./lib/utils/text_utility');
+require('./lib/utils/type_utility');
+require('./lib/utils/url_utility');
+
+// u2f
+require('./u2f/authenticate');
+require('./u2f/error');
+require('./u2f/register');
+require('./u2f/util');
+
+// droplab
+require('./droplab/droplab');
+require('./droplab/droplab_ajax');
+require('./droplab/droplab_ajax_filter');
+require('./droplab/droplab_filter');
+
+// everything else
+require('./abuse_reports');
+require('./activities');
+require('./admin');
+require('./ajax_loading_spinner');
+require('./api');
+require('./aside');
+require('./autosave');
+require('./awards_handler');
+require('./breakpoints');
+require('./broadcast_message');
+require('./build');
+require('./build_artifacts');
+require('./build_variables');
+require('./ci_lint_editor');
+require('./commit');
+require('./commits');
+require('./compare');
+require('./compare_autocomplete');
+require('./confirm_danger_modal');
+require('./copy_as_gfm');
+require('./copy_to_clipboard');
+require('./create_label');
+require('./diff');
+require('./dispatcher');
+require('./dropzone_input');
+require('./due_date_select');
+require('./files_comment_button');
+require('./flash');
+require('./gfm_auto_complete');
+require('./gl_dropdown');
+require('./gl_field_error');
+require('./gl_field_errors');
+require('./gl_form');
+require('./group_avatar');
+require('./group_label_subscription');
+require('./groups_select');
+require('./header');
+require('./importer_status');
+require('./issuable');
+require('./issuable_context');
+require('./issuable_form');
+require('./issue');
+require('./issue_status_select');
+require('./issues_bulk_assignment');
+require('./label_manager');
+require('./labels');
+require('./labels_select');
+require('./layout_nav');
+require('./line_highlighter');
+require('./logo');
+require('./member_expiration_date');
+require('./members');
+require('./merge_request');
+require('./merge_request_tabs');
+require('./merge_request_widget');
+require('./merged_buttons');
+require('./milestone');
+require('./milestone_select');
+require('./mini_pipeline_graph_dropdown');
+require('./namespace_select');
+require('./new_branch_form');
+require('./new_commit_form');
+require('./notes');
+require('./notifications_dropdown');
+require('./notifications_form');
+require('./pager');
+require('./pipelines');
+require('./preview_markdown');
+require('./project');
+require('./project_avatar');
+require('./project_find_file');
+require('./project_fork');
+require('./project_import');
+require('./project_label_subscription');
+require('./project_new');
+require('./project_select');
+require('./project_show');
+require('./project_variables');
+require('./projects_list');
+require('./render_gfm');
+require('./render_math');
+require('./right_sidebar');
+require('./search');
+require('./search_autocomplete');
+require('./shortcuts');
+require('./shortcuts_blob');
+require('./shortcuts_dashboard_navigation');
+require('./shortcuts_find_file');
+require('./shortcuts_issuable');
+require('./shortcuts_navigation');
+require('./shortcuts_network');
+require('./signin_tabs_memoizer');
+require('./single_file_diff');
+require('./smart_interval');
+require('./snippets_list');
+require('./star');
+require('./subbable_resource');
+require('./subscription');
+require('./subscription_select');
+require('./syntax_highlight');
+require('./task_list');
+require('./todos');
+require('./tree');
+require('./user');
+require('./user_tabs');
+require('./username_validator');
+require('./users_select');
+require('./version_check_image');
+require('./visibility_select');
+require('./wikis');
+require('./zen_mode');
+
 require('vendor/fuzzaldrin-plus');
 require('es6-promise').polyfill();
 

app/assets/javascripts/boards/models/list.js.es6

@@ -123,13 +123,17 @@ class List {
 
       if (listFrom) {
         this.issuesSize += 1;
+        this.updateIssueLabel(issue, listFrom);
+      }
+    }
+  }
+
+  updateIssueLabel(issue, listFrom) {
     gl.boardService.moveIssue(issue.id, listFrom.id, this.id)
       .then(() => {
         listFrom.getIssues(false);
       });
   }
-    }
-  }
 
   findIssue (id) {
     return this.issues.filter(issue => issue.id === id)[0];

app/assets/javascripts/boards/stores/boards_store.js.es6

@@ -92,9 +92,12 @@
       const issueLists = issue.getLists();
       const listLabels = issueLists.map(listIssue => listIssue.label);
 
-      // Add to new lists issues if it doesn't already exist
       if (!issueTo) {
+        // Add to new lists issues if it doesn't already exist
         listTo.addIssue(issue, listFrom, newIndex);
+      } else {
+        listTo.updateIssueLabel(issue, listFrom);
+        issueTo.removeLabel(listFrom.label);
       }
 
       if (listTo.type === 'done') {

app/assets/javascripts/dispatcher.js.es6

@@ -36,6 +36,7 @@
 /* global Shortcuts */
 
 const ShortcutsBlob = require('./shortcuts_blob');
+const UserCallout = require('./user_callout');
 
 (function() {
   var Dispatcher;
@@ -277,6 +278,9 @@ const ShortcutsBlob = require('./shortcuts_blob');
         case 'ci:lints:show':
           new gl.CILintEditor();
           break;
+        case 'users:show':
+          new UserCallout();
+          break;
       }
       switch (path.first()) {
         case 'sessions':
@@ -313,6 +317,7 @@ const ShortcutsBlob = require('./shortcuts_blob');
         case 'dashboard':
         case 'root':
           shortcut_handler = new ShortcutsDashboardNavigation();
+          new UserCallout();
           break;
         case 'profiles':
           new NotificationsForm();

app/assets/javascripts/profile/profile_bundle.js

-// require everything else in this directory
-function requireAll(context) { return context.keys().map(context); }
-requireAll(require.context('.', false, /^\.\/(?!profile_bundle).*\.(js|es6)$/));
+require('./gl_crop');
+require('./profile');

app/assets/javascripts/protected_branches/protected_branches_bundle.js

-// require everything else in this directory
-function requireAll(context) { return context.keys().map(context); }
-requireAll(require.context('.', false, /^\.\/(?!protected_branches_bundle).*\.(js|es6)$/));
+require('./protected_branch_access_dropdown');
+require('./protected_branch_create');
+require('./protected_branch_dropdown');
+require('./protected_branch_edit');
+require('./protected_branch_edit_list');

app/assets/javascripts/snippet/snippet_bundle.js

 /* eslint-disable func-names, space-before-function-paren, prefer-arrow-callback, no-var, quotes, max-len */
 /* global ace */
 
-// require everything else in this directory
-function requireAll(context) { return context.keys().map(context); }
-requireAll(require.context('.', false, /^\.\/(?!snippet_bundle).*\.(js|es6)$/));
-
 (function() {
   $(function() {
     var editor = ace.edit("editor");

app/assets/javascripts/user_callout.js

+/* global Cookies */
+
+const userCalloutElementName = '.user-callout';
+const closeButton = '.close-user-callout';
+const userCalloutBtn = '.user-callout-btn';
+const userCalloutSvgAttrName = 'callout-svg';
+
+const USER_CALLOUT_COOKIE = 'user_callout_dismissed';
+
+const USER_CALLOUT_TEMPLATE = `
+  <div class="bordered-box landing content-block">
+    <button class="btn btn-default close close-user-callout" type="button">
+      <i class="fa fa-times dismiss-icon"></i>
+    </button>
+    <div class="row">
+      <div class="col-sm-3 col-xs-12 svg-container">
+      </div>
+      <div class="col-sm-8 col-xs-12 inner-content">
+        <h4>
+          Customize your experience
+        </h4>
+        <p>
+          Change syntax themes, default project pages, and more in preferences.
+        </p>
+        <a class="btn user-callout-btn" href="/profile/preferences">Check it out</a>
+      </div>
+  </div>
+</div>`;
+
+class UserCallout {
+  constructor() {
+    this.isCalloutDismissed = Cookies.get(USER_CALLOUT_COOKIE);
+    this.userCalloutBody = $(userCalloutElementName);
+    this.userCalloutSvg = $(userCalloutElementName).attr(userCalloutSvgAttrName);
+    $(userCalloutElementName).removeAttr(userCalloutSvgAttrName);
+    this.init();
+  }
+
+  init() {
+    const $template = $(USER_CALLOUT_TEMPLATE);
+    if (!this.isCalloutDismissed || this.isCalloutDismissed === 'false') {
+      $template.find('.svg-container').append(this.userCalloutSvg);
+      this.userCalloutBody.append($template);
+      $template.find(closeButton).on('click', e => this.dismissCallout(e));
+      $template.find(userCalloutBtn).on('click', e => this.dismissCallout(e));
+    }
+  }
+
+  dismissCallout(e) {
+    Cookies.set(USER_CALLOUT_COOKIE, 'true');
+    const $currentTarget = $(e.currentTarget);
+    if ($currentTarget.hasClass('close-user-callout')) {
+      this.userCalloutBody.empty();
+    }
+  }
+}
+
+module.exports = UserCallout;

app/assets/javascripts/users/users_bundle.js

-// require everything else in this directory
-function requireAll(context) { return context.keys().map(context); }
-requireAll(require.context('.', false, /^\.\/(?!users_bundle).*\.(js|es6)$/));
+require('./calendar');

app/assets/javascripts/vue_pipelines_index/pipeline_actions.js.es6

 /* global Vue, Flash, gl */
-/* eslint-disable no-param-reassign */
+/* eslint-disable no-param-reassign,  no-alert */
 const playIconSvg = require('../../../views/shared/icons/_icon_play.svg');
 
+
 ((gl) => {
   gl.VuePipelineActions = Vue.extend({
     props: ['pipeline'],
@@ -17,6 +18,20 @@ const playIconSvg = require('../../../views/shared/icons/_icon_play.svg');
       download(name) {
         return `Download ${name} artifacts`;
       },
+
+      /**
+       * Shows a dialog when the user clicks in the cancel button.
+       * We need to prevent the default behavior and stop propagation because the
+       * link relies on UJS.
+       *
+       * @param  {Event} event
+       */
+      confirmAction(event) {
+        if (!confirm('Are you sure you want to cancel this pipeline?')) {
+          event.preventDefault();
+          event.stopPropagation();
+        }
+      },
     },
 
     data() {
@@ -93,6 +108,7 @@ const playIconSvg = require('../../../views/shared/icons/_icon_play.svg');
             </a>
             <a
               v-if='pipeline.flags.cancelable'
+              @click="confirmAction"
               class="btn btn-remove has-tooltip"
               title="Cancel"
               rel="nofollow"

app/assets/stylesheets/pages/profile.scss

@@ -277,3 +277,41 @@ table.u2f-registrations {
     padding-left: 18px;
   }
 }
+
+.user-callout {
+  margin: 24px auto 0;
+
+  .bordered-box {
+    border: 1px solid $border-color;
+    border-radius: $border-radius-default;
+  }
+
+  .landing {
+    margin-bottom: $gl-padding;
+
+    .close {
+      margin-right: 20px;
+    }
+
+    .dismiss-icon {
+      float: right;
+      cursor: pointer;
+      color: $cycle-analytics-dismiss-icon-color;
+    }
+
+    .svg-container {
+      text-align: center;
+
+      svg {
+        width: 136px;
+        height: 136px;
+      }
+    }
+  }
+
+  @media(max-width: $screen-xs-max) {
+    .inner-content {
+      padding-left: 30px;
+    }
+  }
+}

app/models/repository.rb

@@ -746,136 +746,63 @@ class Repository
     @tags ||= raw_repository.tags
   end
 
-  # rubocop:disable Metrics/ParameterLists
-  def commit_dir(
-    user, path,
-    message:, branch_name:,
-    author_email: nil, author_name: nil,
-    start_branch_name: nil, start_project: project)
-    check_tree_entry_for_dir(branch_name, path)
+  def create_dir(user, path, **options)
+    options[:user] = user
+    options[:actions] = [{ action: :create_dir, file_path: path }]
 
-    if start_branch_name
-      start_project.repository.
-        check_tree_entry_for_dir(start_branch_name, path)
+    multi_action(**options)
   end
 
-    commit_file(
-      user,
-      "#{path}/.gitkeep",
-      '',
-      message: message,
-      branch_name: branch_name,
-      update: false,
-      author_email: author_email,
-      author_name: author_name,
-      start_branch_name: start_branch_name,
-      start_project: start_project)
-  end
-  # rubocop:enable Metrics/ParameterLists
+  def create_file(user, path, content, **options)
+    options[:user] = user
+    options[:actions] = [{ action: :create, file_path: path, content: content }]
 
-  # rubocop:disable Metrics/ParameterLists
-  def commit_file(
-    user, path, content,
-    message:, branch_name:, update: true,
-    author_email: nil, author_name: nil,
-    start_branch_name: nil, start_project: project)
-    unless update
-      error_message = "Filename already exists; update not allowed"
-
-      if tree_entry_at(branch_name, path)
-        raise Gitlab::Git::Repository::InvalidBlobName.new(error_message)
+    multi_action(**options)
   end
 
-      if start_branch_name &&
-          start_project.repository.tree_entry_at(start_branch_name, path)
-        raise Gitlab::Git::Repository::InvalidBlobName.new(error_message)
-      end
-    end
+  def update_file(user, path, content, **options)
+    previous_path = options.delete(:previous_path)
+    action = previous_path && previous_path != path ? :move : :update
 
-    multi_action(
-      user: user,
-      message: message,
-      branch_name: branch_name,
-      author_email: author_email,
-      author_name: author_name,
-      start_branch_name: start_branch_name,
-      start_project: start_project,
-      actions: [{ action: :create,
-                  file_path: path,
-                  content: content }])
-  end
-  # rubocop:enable Metrics/ParameterLists
+    options[:user] = user
+    options[:actions] = [{ action: action, file_path: path, previous_path: previous_path, content: content }]
 
-  # rubocop:disable Metrics/ParameterLists
-  def update_file(
-    user, path, content,
-    message:, branch_name:, previous_path:,
-    author_email: nil, author_name: nil,
-    start_branch_name: nil, start_project: project)
-    action = if previous_path && previous_path != path
-               :move
-             else
-               :update
+    multi_action(**options)
   end
 
-    multi_action(
-      user: user,
-      message: message,
-      branch_name: branch_name,
-      author_email: author_email,
-      author_name: author_name,
-      start_branch_name: start_branch_name,
-      start_project: start_project,
-      actions: [{ action: action,
-                  file_path: path,
-                  content: content,
-                  previous_path: previous_path }])
-  end
-  # rubocop:enable Metrics/ParameterLists
+  def delete_file(user, path, **options)
+    options[:user] = user
+    options[:actions] = [{ action: :delete, file_path: path }]
 
-  # rubocop:disable Metrics/ParameterLists
-  def remove_file(
-    user, path,
-    message:, branch_name:,
-    author_email: nil, author_name: nil,
-    start_branch_name: nil, start_project: project)
-    multi_action(
-      user: user,
-      message: message,
-      branch_name: branch_name,
-      author_email: author_email,
-      author_name: author_name,
-      start_branch_name: start_branch_name,
-      start_project: start_project,
-      actions: [{ action: :delete,
-                  file_path: path }])
+    multi_action(**options)
   end
-  # rubocop:enable Metrics/ParameterLists
 
   # rubocop:disable Metrics/ParameterLists
   def multi_action(
     user:, branch_name:, message:, actions:,
     author_email: nil, author_name: nil,
     start_branch_name: nil, start_project: project)
+
     GitOperationService.new(user, self).with_branch(
       branch_name,
       start_branch_name: start_branch_name,
       start_project: start_project) do |start_commit|
-      index = rugged.index
 
-      parents = if start_commit
+      index = Gitlab::Git::Index.new(raw_repository)
+
+      if start_commit
         index.read_tree(start_commit.raw_commit.tree)
-                  [start_commit.sha]
+        parents = [start_commit.sha]
       else
-                  []
+        parents = []
       end
 
-      actions.each do |act|
-        git_action(index, act)
+      actions.each do |options|
+        index.public_send(options.delete(:action), options)
       end
 
       options = {
-        tree: index.write_tree(rugged),
+        tree: index.write_tree,
         message: message,
         parents: parents
       }
@@ -1166,30 +1093,6 @@ class Repository
     blob_data_at(sha, '.gitlab-ci.yml')
   end
 
-  protected
-
-  def tree_entry_at(branch_name, path)
-    branch_exists?(branch_name) &&
-      # tree_entry is private
-      raw_repository.send(:tree_entry, commit(branch_name), path)
-  end
-
-  def check_tree_entry_for_dir(branch_name, path)
-    return unless branch_exists?(branch_name)
-
-    entry = tree_entry_at(branch_name, path)
-
-    return unless entry
-
-    if entry[:type] == :blob
-      raise Gitlab::Git::Repository::InvalidBlobName.new(
-        "Directory already exists as a file")
-    else
-      raise Gitlab::Git::Repository::InvalidBlobName.new(
-        "Directory already exists")
-    end
-  end
-
   private
 
   def blob_data_at(sha, path)
@@ -1200,58 +1103,6 @@ class Repository
     blob.data
   end
 
-  def git_action(index, action)
-    path = normalize_path(action[:file_path])
-
-    if action[:action] == :move
-      previous_path = normalize_path(action[:previous_path])
-    end
-
-    case action[:action]
-    when :create, :update, :move
-      mode =
-        case action[:action]
-        when :update
-          index.get(path)[:mode]
-        when :move
-          index.get(previous_path)[:mode]
-        end
-      mode ||= 0o100644
-
-      index.remove(previous_path) if action[:action] == :move
-
-      content = if action[:encoding] == 'base64'
-                  Base64.decode64(action[:content])
-                else
-                  action[:content]
-                end
-
-      detect = CharlockHolmes::EncodingDetector.new.detect(content) if content
-
-      unless detect && detect[:type] == :binary
-        # When writing to the repo directly as we are doing here,
-        # the `core.autocrlf` config isn't taken into account.
-        content.gsub!("\r\n", "\n") if self.autocrlf
-      end
-
-      oid = rugged.write(content, :blob)
-
-      index.add(path: path, oid: oid, mode: mode)
-    when :delete
-      index.remove(path)
-    end
-  end
-
-  def normalize_path(path)
-    pathname = Gitlab::Git::PathHelper.normalize_path(path)
-
-    if pathname.each_filename.include?('..')
-      raise Gitlab::Git::Repository::InvalidBlobName.new('Invalid path')
-    end
-
-    pathname.to_s
-  end
-
   def refs_directory_exists?
     return false unless path_with_namespace
 

app/services/files/create_dir_service.rb

 module Files
   class CreateDirService < Files::BaseService
     def commit
-      repository.commit_dir(
+      repository.create_dir(
         current_user,
         @file_path,
         message: @commit_message,

app/services/files/create_service.rb

 module Files
   class CreateService < Files::BaseService
     def commit
-      repository.commit_file(
+      repository.create_file(
         current_user,
         @file_path,
         @file_content,
         message: @commit_message,
         branch_name: @target_branch,
-        update: false,
         author_email: @author_email,
         author_name: @author_name,
         start_project: @start_project,
@@ -17,6 +16,10 @@ module Files
     def validate
       super
 
+      if @file_content.nil?
+        raise_error("You must provide content.")
+      end
+
       if @file_path =~ Gitlab::Regex.directory_traversal_regex
         raise_error(
           'Your changes could not be committed, because the file name ' +

app/services/files/destroy_service.rb

 module Files
   class DestroyService < Files::BaseService
     def commit
-      repository.remove_file(
+      repository.delete_file(
         current_user,
         @file_path,
         message: @commit_message,

app/services/files/multi_service.rb

@@ -2,6 +2,8 @@ module Files
   class MultiService < Files::BaseService
     class FileChangedError < StandardError; end
 
+    ACTIONS = %w[create update delete move].freeze
+
     def commit
       repository.multi_action(
         user: current_user,
@@ -21,10 +23,19 @@ module Files
       super
 
       params[:actions].each_with_index do |action, index|
+        if ACTIONS.include?(action[:action].to_s)
+          action[:action] = action[:action].to_sym
+        else
+          raise_error("Unknown action type `#{action[:action]}`.")
+        end
+
         unless action[:file_path].present?
           raise_error("You must specify a file_path.")
         end
 
+        action[:file_path].slice!(0) if action[:file_path] && action[:file_path].start_with?('/')
+        action[:previous_path].slice!(0) if action[:previous_path] && action[:previous_path].start_with?('/')
+
         regex_check(action[:file_path])
         regex_check(action[:previous_path]) if action[:previous_path]
 
@@ -43,8 +54,6 @@ module Files
           validate_delete(action)
         when :move
           validate_move(action, index)
-        else
-          raise_error("Unknown action type `#{action[:action]}`.")
         end
       end
     end
@@ -92,6 +101,20 @@ module Files
       if repository.blob_at_branch(params[:branch], action[:file_path])
         raise_error("Your changes could not be committed because a file with the name `#{action[:file_path]}` already exists.")
       end
+
+      if action[:content].nil?
+        raise_error("You must provide content.")
+      end
+    end
+
+    def validate_update(action)
+      if action[:content].nil?
+        raise_error("You must provide content.")
+      end
+
+      if file_has_changed?
+        raise FileChangedError.new("You are attempting to update a file `#{action[:file_path]}` that has changed since you started editing it.")
+      end
     end
 
     def validate_delete(action)
@@ -114,11 +137,5 @@ module Files
         params[:actions][index][:content] = blob.data
       end
     end
-
-    def validate_update(action)
-      if file_has_changed?
-        raise FileChangedError.new("You are attempting to update a file `#{action[:file_path]}` that has changed since you started editing it.")
-      end
-    end
   end
 end

app/services/files/update_service.rb

@@ -18,6 +18,10 @@ module Files
     def validate
       super
 
+      if @file_content.nil?
+        raise_error("You must provide content.")
+      end
+
       if file_has_changed?
         raise FileChangedError.new("You are attempting to update a file that has changed since you started editing it.")
       end

app/views/dashboard/projects/index.html.haml

@@ -5,6 +5,8 @@
 - page_title    "Projects"
 - header_title  "Projects", dashboard_projects_path
 
+.user-callout{ 'callout-svg' => custom_icon('icon_customization') }
+
 - if @projects.any? || params[:filter_projects]
   = render 'dashboard/projects_head'
 

app/views/shared/icons/_icon_customization.svg

+<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 112 90" xmlns:xlink="http://www.w3.org/1999/xlink"><g fill="none" fill-rule="evenodd"><rect width="112" height="90" fill="#fff" rx="6"/><path fill="#eee" fill-rule="nonzero" d="m4 6.01v77.98c0 1.11.899 2.01 2 2.01h100c1.105 0 2-.898 2-2.01v-77.98c0-1.11-.899-2.01-2-2.01h-100c-1.105 0-2 .898-2 2.01m-4 0c0-3.319 2.686-6.01 6-6.01h100c3.315 0 6 2.694 6 6.01v77.98c0 3.319-2.686 6.01-6 6.01h-100c-3.315 0-6-2.694-6-6.01v-77.98"/><g transform="translate(26 35)"><rect width="4" height="39" x="5" fill="#eee" rx="2" id="0"/><rect width="4" height="21" x="5" y="18" fill="#fef0ea" rx="2"/><circle cx="7" cy="13" r="5" fill="#fff"/><path fill="#fb722e" fill-rule="nonzero" d="m7 20c-3.866 0-7-3.134-7-7 0-3.866 3.134-7 7-7 3.866 0 7 3.134 7 7 0 3.866-3.134 7-7 7m0-4c1.657 0 3-1.343 3-3 0-1.657-1.343-3-3-3-1.657 0-3 1.343-3 3 0 1.657 1.343 3 3 3"/></g><g transform="translate(49 35)"><use xlink:href="#0"/><rect width="4" height="21" x="5" y="18" fill="#b5a7dd" rx="2"/><circle cx="7" cy="25" r="5" fill="#fff"/><path fill="#6b4fbb" fill-rule="nonzero" d="m7 32c-3.866 0-7-3.134-7-7 0-3.866 3.134-7 7-7 3.866 0 7 3.134 7 7 0 3.866-3.134 7-7 7m0-4c1.657 0 3-1.343 3-3 0-1.657-1.343-3-3-3-1.657 0-3 1.343-3 3 0 1.657 1.343 3 3 3"/></g><g transform="translate(72 33)"><rect width="4" height="39" x="5" y="2" fill="#eee" rx="2"/><rect width="4" height="34" x="5" y="7" fill="#fef0ea" rx="2"/><circle cx="7" cy="7" r="5" fill="#fff"/><path fill="#fb722e" fill-rule="nonzero" d="m7 14c-3.866 0-7-3.134-7-7 0-3.866 3.134-7 7-7 3.866 0 7 3.134 7 7 0 3.866-3.134 7-7 7m0-4c1.657 0 3-1.343 3-3 0-1.657-1.343-3-3-3-1.657 0-3 1.343-3 3 0 1.657 1.343 3 3 3"/></g><g fill="#6b4fbb"><circle cx="13.5" cy="11.5" r="2.5"/><circle cx="23.5" cy="11.5" r="2.5" opacity=".5"/><circle cx="33.5" cy="11.5" r="2.5" opacity=".5"/></g><path fill="#eee" d="m0 19h111v4h-111z"/></g></svg>

app/views/users/show.html.haml

@@ -98,6 +98,7 @@
           Snippets
 
   %div{ class: container_class }
+    .user-callout{ 'callout-svg' => custom_icon('icon_customization') }
     .tab-content
       #activity.tab-pane
         .row-content-block.calender-block.white.second-block.hidden-xs

changelogs/unreleased/moving-issue-with-two-list-labels.yml

+---
+title: Removes label when moving issue to another list that it is currently in
+merge_request:
+author:

changelogs/unreleased/user-callouts.yml

+---
+title: Added user callouts to the projects dashboard and user profile
+merge_request:
+author:

db/fixtures/development/17_cycle_analytics.rb

@@ -155,17 +155,9 @@ class Gitlab::Seeder::CycleAnalytics
 
       issue.project.repository.add_branch(@user, branch_name, 'master')
 
-      options = {
-        committer: issue.project.repository.user_to_committer(@user),
-        author: issue.project.repository.user_to_committer(@user),
-        commit: { message: "Commit for ##{issue.iid}", branch: branch_name, update_ref: true },
-        file: { content: "content", path: filename, update: false }
-      }
-
-      commit_sha = Gitlab::Git::Blob.commit(issue.project.repository, options)
+      commit_sha = issue.project.repository.create_file(@user, filename, "content", options, message: "Commit for ##{issue.iid}", branch_name: branch_name)
       issue.project.repository.commit(commit_sha)
 
-
       GitPushService.new(issue.project,
                          @user,
                          oldrev: issue.project.repository.commit("master").sha,

lib/api/commits.rb

@@ -52,13 +52,6 @@ module API
 
         attrs = declared_params.merge(start_branch: declared_params[:branch], target_branch: declared_params[:branch])
 
-        attrs[:actions].map! do |action|
-          action[:action] = action[:action].to_sym
-          action[:file_path].slice!(0) if action[:file_path] && action[:file_path].start_with?('/')
-          action[:previous_path].slice!(0) if action[:previous_path] && action[:previous_path].start_with?('/')
-          action
-        end
-
         result = ::Files::MultiService.new(user_project, current_user, attrs).execute
 
         if result[:status] == :success

lib/api/v3/commits.rb

@@ -55,13 +55,6 @@ module API
           branch = attrs.delete(:branch_name)
           attrs.merge!(branch: branch, start_branch: branch, target_branch: branch)
 
-          attrs[:actions].map! do |action|
-            action[:action] = action[:action].to_sym
-            action[:file_path].slice!(0) if action[:file_path] && action[:file_path].start_with?('/')
-            action[:previous_path].slice!(0) if action[:previous_path] && action[:previous_path].start_with?('/')
-            action
-          end
-
           result = ::Files::MultiService.new(user_project, current_user, attrs).execute
 
           if result[:status] == :success

lib/gitlab/git/blob.rb

@@ -93,163 +93,6 @@ module Gitlab
             commit_id: sha,
           )
         end
-
-        # Commit file in repository and return commit sha
-        #
-        # options should contain next structure:
-        #   file: {
-        #     content: 'Lorem ipsum...',
-        #     path: 'documents/story.txt',
-        #     update: true
-        #   },
-        #   author: {
-        #     email: 'user@example.com',
-        #     name: 'Test User',
-        #     time: Time.now
-        #   },
-        #   committer: {
-        #     email: 'user@example.com',
-        #     name: 'Test User',
-        #     time: Time.now
-        #   },
-        #   commit: {
-        #     message: 'Wow such commit',
-        #     branch: 'master',
-        #     update_ref: false
-        #   }
-        #
-        # rubocop:disable Metrics/AbcSize
-        # rubocop:disable Metrics/CyclomaticComplexity
-        # rubocop:disable Metrics/PerceivedComplexity
-        def commit(repository, options, action = :add)
-          file = options[:file]
-          update = file[:update].nil? ? true : file[:update]
-          author = options[:author]
-          committer = options[:committer]
-          commit = options[:commit]
-          repo = repository.rugged
-          ref = commit[:branch]
-          update_ref = commit[:update_ref].nil? ? true : commit[:update_ref]
-          parents = []
-          mode = 0o100644
-
-          unless ref.start_with?('refs/')
-            ref = 'refs/heads/' + ref
-          end
-
-          path_name = Gitlab::Git::PathHelper.normalize_path(file[:path])
-          # Abort if any invalid characters remain (e.g. ../foo)
-          raise Gitlab::Git::Repository::InvalidBlobName.new("Invalid path") if path_name.each_filename.to_a.include?('..')
-
-          filename = path_name.to_s
-          index = repo.index
-
-          unless repo.empty?
-            rugged_ref = repo.references[ref]
-            raise Gitlab::Git::Repository::InvalidRef.new("Invalid branch name") unless rugged_ref
-            last_commit = rugged_ref.target
-            index.read_tree(last_commit.tree)
-            parents = [last_commit]
-          end
-
-          if action == :remove
-            index.remove(filename)
-          else
-            file_entry = index.get(filename)
-
-            if action == :rename
-              old_path_name = Gitlab::Git::PathHelper.normalize_path(file[:previous_path])
-              old_filename = old_path_name.to_s
-              file_entry = index.get(old_filename)
-              index.remove(old_filename) unless file_entry.blank?
-            end
-
-            if file_entry
-              raise Gitlab::Git::Repository::InvalidBlobName.new("Filename already exists; update not allowed") unless update
-
-              # Preserve the current file mode if one is available
-              mode = file_entry[:mode] if file_entry[:mode]
-            end
-
-            content = file[:content]
-            detect = CharlockHolmes::EncodingDetector.new.detect(content) if content
-
-            unless detect && detect[:type] == :binary
-              # When writing to the repo directly as we are doing here,
-              # the `core.autocrlf` config isn't taken into account.
-              content.gsub!("\r\n", "\n") if repository.autocrlf
-            end
-
-            oid = repo.write(content, :blob)
-            index.add(path: filename, oid: oid, mode: mode)
-          end
-
-          opts = {}
-          opts[:tree] = index.write_tree(repo)
-          opts[:author] = author
-          opts[:committer] = committer
-          opts[:message] = commit[:message]
-          opts[:parents] = parents
-          opts[:update_ref] = ref if update_ref
-
-          Rugged::Commit.create(repo, opts)
-        end
-        # rubocop:enable Metrics/AbcSize
-        # rubocop:enable Metrics/CyclomaticComplexity
-        # rubocop:enable Metrics/PerceivedComplexity
-
-        # Remove file from repository and return commit sha
-        #
-        # options should contain next structure:
-        #   file: {
-        #     path: 'documents/story.txt'
-        #   },
-        #   author: {
-        #     email: 'user@example.com',
-        #     name: 'Test User',
-        #     time: Time.now
-        #   },
-        #   committer: {
-        #     email: 'user@example.com',
-        #     name: 'Test User',
-        #     time: Time.now
-        #   },
-        #   commit: {
-        #     message: 'Remove FILENAME',
-        #     branch: 'master'
-        #   }
-        #
-        def remove(repository, options)
-          commit(repository, options, :remove)
-        end
-
-        # Rename file from repository and return commit sha
-        #
-        # options should contain next structure:
-        #   file: {
-        #     previous_path: 'documents/old_story.txt'
-        #     path: 'documents/story.txt'
-        #     content: 'Lorem ipsum...',
-        #     update: true
-        #   },
-        #   author: {
-        #     email: 'user@example.com',
-        #     name: 'Test User',
-        #     time: Time.now
-        #   },
-        #   committer: {
-        #     email: 'user@example.com',
-        #     name: 'Test User',
-        #     time: Time.now
-        #   },
-        #   commit: {
-        #     message: 'Rename FILENAME',
-        #     branch: 'master'
-        #   }
-        #
-        def rename(repository, options)
-          commit(repository, options, :rename)
-        end
       end
 
       def initialize(options)

lib/gitlab/git/index.rb

+module Gitlab
+  module Git
+    class Index
+      DEFAULT_MODE = 0o100644
+
+      attr_reader :repository, :raw_index
+
+      def initialize(repository)
+        @repository = repository
+        @raw_index = repository.rugged.index
+      end
+
+      delegate :read_tree, :get, to: :raw_index
+
+      def write_tree
+        raw_index.write_tree(repository.rugged)
+      end
+
+      def dir_exists?(path)
+        raw_index.find { |entry| entry[:path].start_with?("#{path}/") }
+      end
+
+      def create(options)
+        options = normalize_options(options)
+
+        file_entry = get(options[:file_path])
+        if file_entry
+          raise Gitlab::Git::Repository::InvalidBlobName.new("Filename already exists")
+        end
+
+        add_blob(options)
+      end
+
+      def create_dir(options)
+        options = normalize_options(options)
+
+        file_entry = get(options[:file_path])
+        if file_entry
+          raise Gitlab::Git::Repository::InvalidBlobName.new("Directory already exists as a file")
+        end
+
+        if dir_exists?(options[:file_path])
+          raise Gitlab::Git::Repository::InvalidBlobName.new("Directory already exists")
+        end
+
+        options = options.dup
+        options[:file_path] += '/.gitkeep'
+        options[:content] = ''
+
+        add_blob(options)
+      end
+
+      def update(options)
+        options = normalize_options(options)
+
+        file_entry = get(options[:file_path])
+        unless file_entry
+          raise Gitlab::Git::Repository::InvalidBlobName.new("File doesn't exist")
+        end
+
+        add_blob(options, mode: file_entry[:mode])
+      end
+
+      def move(options)
+        options = normalize_options(options)
+
+        file_entry = get(options[:previous_path])
+        unless file_entry
+          raise Gitlab::Git::Repository::InvalidBlobName.new("File doesn't exist")
+        end
+
+        raw_index.remove(options[:previous_path])
+
+        add_blob(options, mode: file_entry[:mode])
+      end
+
+      def delete(options)
+        options = normalize_options(options)
+
+        file_entry = get(options[:file_path])
+        unless file_entry
+          raise Gitlab::Git::Repository::InvalidBlobName.new("File doesn't exist")
+        end
+
+        raw_index.remove(options[:file_path])
+      end
+
+      private
+
+      def normalize_options(options)
+        options = options.dup
+        options[:file_path] = normalize_path(options[:file_path]) if options[:file_path]
+        options[:previous_path] = normalize_path(options[:previous_path]) if options[:previous_path]
+        options
+      end
+
+      def normalize_path(path)
+        pathname = Gitlab::Git::PathHelper.normalize_path(path.dup)
+
+        if pathname.each_filename.include?('..')
+          raise Gitlab::Git::Repository::InvalidBlobName.new('Invalid path')
+        end
+
+        pathname.to_s
+      end
+
+      def add_blob(options, mode: nil)
+        content = options[:content]
+        content = Base64.decode64(content) if options[:encoding] == 'base64'
+
+        detect = CharlockHolmes::EncodingDetector.new.detect(content)
+        unless detect && detect[:type] == :binary
+          # When writing to the repo directly as we are doing here,
+          # the `core.autocrlf` config isn't taken into account.
+          content.gsub!("\r\n", "\n") if repository.autocrlf
+        end
+
+        oid = repository.rugged.write(content, :blob)
+
+        raw_index.add(path: options[:file_path], oid: oid, mode: mode || DEFAULT_MODE)
+      rescue Rugged::IndexError => e
+        raise Gitlab::Git::Repository::InvalidBlobName.new(e.message)
+      end
+    end
+  end
+end

lib/gitlab/git/repository.rb

@@ -837,57 +837,6 @@ module Gitlab
         rugged.config['core.autocrlf'] = AUTOCRLF_VALUES.invert[value]
       end
 
-      # Create a new directory with a .gitkeep file. Creates
-      # all required nested directories (i.e. mkdir -p behavior)
-      #
-      # options should contain next structure:
-      #   author: {
-      #     email: 'user@example.com',
-      #     name: 'Test User',
-      #     time: Time.now
-      #   },
-      #   committer: {
-      #     email: 'user@example.com',
-      #     name: 'Test User',
-      #     time: Time.now
-      #   },
-      #   commit: {
-      #     message: 'Wow such commit',
-      #     branch: 'master',
-      #     update_ref: false
-      #   }
-      def mkdir(path, options = {})
-        # Check if this directory exists; if it does, then don't bother
-        # adding .gitkeep file.
-        ref = options[:commit][:branch]
-        path = Gitlab::Git::PathHelper.normalize_path(path).to_s
-        rugged_ref = rugged.ref(ref)
-
-        raise InvalidRef.new("Invalid ref") if rugged_ref.nil?
-
-        target_commit = rugged_ref.target
-
-        raise InvalidRef.new("Invalid target commit") if target_commit.nil?
-
-        entry = tree_entry(target_commit, path)
-
-        if entry
-          if entry[:type] == :blob
-            raise InvalidBlobName.new("Directory already exists as a file")
-          else
-            raise InvalidBlobName.new("Directory already exists")
-          end
-        end
-
-        options[:file] = {
-          content: '',
-          path: "#{path}/.gitkeep",
-          update: true
-        }
-
-        Gitlab::Git::Blob.commit(self, options)
-      end
-
       # Returns result like "git ls-files" , recursive and full file path
       #
       # Ex.

spec/controllers/projects/templates_controller_spec.rb

@@ -14,8 +14,8 @@ describe Projects::TemplatesController do
 
   before do
     project.add_user(user, Gitlab::Access::MASTER)
-    project.repository.commit_file(user, file_path_1, 'something valid',
-      message: 'test 3', branch_name: 'master', update: false)
+    project.repository.create_file(user, file_path_1, 'something valid',
+      message: 'test 3', branch_name: 'master')
   end
 
   describe '#show' do

spec/factories/projects.rb

@@ -138,27 +138,24 @@ FactoryGirl.define do
 
         project.add_user(args[:user], args[:access])
 
-        project.repository.commit_file(
+        project.repository.create_file(
           args[:user],
           ".gitlab/#{args[:path]}/bug.md",
           'something valid',
           message: 'test 3',
-          branch_name: 'master',
-          update: false)
-        project.repository.commit_file(
+          branch_name: 'master')
+        project.repository.create_file(
           args[:user],
           ".gitlab/#{args[:path]}/template_test.md",
           'template_test',
           message: 'test 1',
-          branch_name: 'master',
-          update: false)
-        project.repository.commit_file(
+          branch_name: 'master')
+        project.repository.create_file(
           args[:user],
           ".gitlab/#{args[:path]}/feature_proposal.md",
           'feature_proposal',
           message: 'test 2',
-          branch_name: 'master',
-          update: false)
+          branch_name: 'master')
       end
     end
   end

spec/features/projects/files/project_owner_creates_license_file_spec.rb

@@ -6,7 +6,7 @@ feature 'project owner creates a license file', feature: true, js: true do
   let(:project_master) { create(:user) }
   let(:project) { create(:project) }
   background do
-    project.repository.remove_file(project_master, 'LICENSE',
+    project.repository.delete_file(project_master, 'LICENSE',
       message: 'Remove LICENSE', branch_name: 'master')
     project.team << [project_master, :master]
     login_as(project_master)

spec/features/projects/issuable_templates_spec.rb

@@ -18,20 +18,18 @@ feature 'issuable templates', feature: true, js: true do
     let(:description_addition) { ' appending to description' }
 
     background do
-      project.repository.commit_file(
+      project.repository.create_file(
         user,
         '.gitlab/issue_templates/bug.md',
         template_content,
         message: 'added issue template',
-        branch_name: 'master',
-        update: false)
-      project.repository.commit_file(
+        branch_name: 'master')
+      project.repository.create_file(
         user,
         '.gitlab/issue_templates/test.md',
         longtemplate_content,
         message: 'added issue template',
-        branch_name: 'master',
-        update: false)
+        branch_name: 'master')
       visit edit_namespace_project_issue_path project.namespace, project, issue
       fill_in :'issue[title]', with: 'test issue title'
     end
@@ -79,13 +77,12 @@ feature 'issuable templates', feature: true, js: true do
     let(:issue) { create(:issue, author: user, assignee: user, project: project) }
 
     background do
-      project.repository.commit_file(
+      project.repository.create_file(
         user,
         '.gitlab/issue_templates/bug.md',
         template_content,
         message: 'added issue template',
-        branch_name: 'master',
-        update: false)
+        branch_name: 'master')
       visit edit_namespace_project_issue_path project.namespace, project, issue
       fill_in :'issue[title]', with: 'test issue title'
       fill_in :'issue[description]', with: prior_description
@@ -104,13 +101,12 @@ feature 'issuable templates', feature: true, js: true do
     let(:merge_request) { create(:merge_request, :with_diffs, source_project: project) }
 
     background do
-      project.repository.commit_file(
+      project.repository.create_file(
         user,
         '.gitlab/merge_request_templates/feature-proposal.md',
         template_content,
         message: 'added merge request template',
-        branch_name: 'master',
-        update: false)
+        branch_name: 'master')
       visit edit_namespace_project_merge_request_path project.namespace, project, merge_request
       fill_in :'merge_request[title]', with: 'test merge request title'
     end
@@ -135,13 +131,12 @@ feature 'issuable templates', feature: true, js: true do
       fork_project.team << [fork_user, :master]
       create(:forked_project_link, forked_to_project: fork_project, forked_from_project: project)
       login_as fork_user
-      project.repository.commit_file(
+      project.repository.create_file(
         fork_user,
         '.gitlab/merge_request_templates/feature-proposal.md',
         template_content,
         message: 'added merge request template',
-        branch_name: 'master',
-        update: false)
+        branch_name: 'master')
       visit edit_namespace_project_merge_request_path project.namespace, project, merge_request
       fill_in :'merge_request[title]', with: 'test merge request title'
     end

spec/features/user_callout_spec.rb

+require 'spec_helper'
+
+describe 'User Callouts', js: true do
+  let(:user) { create(:user) }
+  let(:project) { create(:empty_project, path: 'gitlab', name: 'sample') }
+
+  before do
+    login_as(user)
+    project.team << [user, :master]    
+  end
+
+  it 'takes you to the profile preferences when the link is clicked' do    
+    visit dashboard_projects_path
+    click_link 'Check it out'
+    expect(current_path).to eq profile_preferences_path
+  end
+
+  describe 'user callout should appear in two routes' do
+    it 'shows up on the user profile' do
+      visit user_path(user)
+      expect(find('.user-callout')).to have_content 'Customize your experience'
+    end
+
+    it 'shows up on the dashboard projects' do
+      visit dashboard_projects_path
+      expect(find('.user-callout')).to have_content 'Customize your experience'
+    end
+  end
+
+  it 'hides the user callout when click on the dismiss icon' do
+    visit user_path(user)
+    within('.user-callout') do
+      find('.close-user-callout').click
+    end
+    expect(page).not_to have_selector('#user-callout')
+  end
+end

spec/javascripts/boards/list_spec.js.es6

@@ -3,7 +3,9 @@
 /* global boardsMockInterceptor */
 /* global BoardService */
 /* global List */
+/* global ListIssue */
 /* global listObj */
+/* global listObjDuplicate */
 
 require('~/lib/utils/url_utility');
 require('~/boards/models/issue');
@@ -84,4 +86,23 @@ describe('List model', () => {
       done();
     }, 0);
   });
+
+  it('sends service request to update issue label', () => {
+    const listDup = new List(listObjDuplicate);
+    const issue = new ListIssue({
+      title: 'Testing',
+      iid: 1,
+      confidential: false,
+      labels: [list.label, listDup.label]
+    });
+
+    list.issues.push(issue);
+    listDup.issues.push(issue);
+
+    spyOn(gl.boardService, 'moveIssue').and.callThrough();
+
+    listDup.updateIssueLabel(list, issue);
+
+    expect(gl.boardService.moveIssue).toHaveBeenCalledWith(issue.id, list.id, listDup.id);
+  });
 });

spec/javascripts/fixtures/user_callout.html.haml

+.user-callout{ 'callout-svg' => custom_icon('icon_customization') }
+

spec/javascripts/user_callout_spec.js.es6

+const UserCallout = require('~/user_callout');
+
+const USER_CALLOUT_COOKIE = 'user_callout_dismissed';
+const Cookie = window.Cookies;
+
+describe('UserCallout', () => {
+  const fixtureName = 'static/user_callout.html.raw';
+  preloadFixtures(fixtureName);
+
+  beforeEach(function () {
+    loadFixtures(fixtureName);
+    this.userCallout = new UserCallout();
+    this.closeButton = $('.close-user-callout');
+    this.userCalloutBtn = $('.user-callout-btn');
+    this.userCalloutContainer = $('.user-callout');
+    Cookie.set(USER_CALLOUT_COOKIE, 'false');
+  });
+
+  afterEach(function () {
+    Cookie.set(USER_CALLOUT_COOKIE, 'false');
+  });
+
+  it('shows when cookie is set to false', function () {
+    expect(Cookie.get(USER_CALLOUT_COOKIE)).toBeDefined();
+    expect(this.userCalloutContainer.is(':visible')).toBe(true);
+  });
+
+  it('hides when user clicks on the dismiss-icon', function () {
+    this.closeButton.click();
+    expect(Cookie.get(USER_CALLOUT_COOKIE)).toBe('true');
+  });
+
+  it('hides when user clicks on the "check it out" button', function () {
+    this.userCalloutBtn.click();
+    expect(Cookie.get(USER_CALLOUT_COOKIE)).toBe('true');
+  });
+});

spec/lib/gitlab/git/blob_spec.rb

@@ -222,191 +222,6 @@ describe Gitlab::Git::Blob, seed_helper: true do
     end
   end
 
-  describe :commit do
-    let(:repository) { Gitlab::Git::Repository.new(TEST_REPO_PATH) }
-
-    let(:commit_options) do
-      {
-         file: {
-           content: 'Lorem ipsum...',
-           path: 'documents/story.txt'
-         },
-         author: {
-           email: 'user@example.com',
-           name: 'Test User',
-           time: Time.now
-         },
-         committer: {
-           email: 'user@example.com',
-           name: 'Test User',
-           time: Time.now
-         },
-         commit: {
-           message: 'Wow such commit',
-           branch: 'fix-mode'
-         }
-      }
-    end
-
-    let(:commit_sha) { Gitlab::Git::Blob.commit(repository, commit_options) }
-    let(:commit) { repository.lookup(commit_sha) }
-
-    it 'should add file with commit' do
-      # Commit message valid
-      expect(commit.message).to eq('Wow such commit')
-
-      tree = commit.tree.to_a.find { |tree| tree[:name] == 'documents' }
-
-      # Directory was created
-      expect(tree[:type]).to eq(:tree)
-
-      # File was created
-      expect(repository.lookup(tree[:oid]).first[:name]).to eq('story.txt')
-    end
-
-    describe "ref updating" do
-      it 'creates a commit but does not udate a ref' do
-        commit_opts = commit_options.tap{ |opts| opts[:commit][:update_ref] = false}
-        commit_sha = Gitlab::Git::Blob.commit(repository, commit_opts)
-        commit = repository.lookup(commit_sha)
-
-        # Commit message valid
-        expect(commit.message).to eq('Wow such commit')
-
-        # Does not update any related ref
-        expect(repository.lookup("fix-mode").oid).not_to eq(commit.oid)
-        expect(repository.lookup("HEAD").oid).not_to eq(commit.oid)
-      end
-    end
-
-    describe 'reject updates' do
-      it 'should reject updates' do
-        commit_options[:file][:update] = false
-        commit_options[:file][:path] = 'files/executables/ls'
-
-        expect{ commit_sha }.to raise_error('Filename already exists; update not allowed')
-      end
-    end
-
-    describe 'file modes' do
-      it 'should preserve file modes with commit' do
-        commit_options[:file][:path] = 'files/executables/ls'
-
-        entry = Gitlab::Git::Blob.find_entry_by_path(repository, commit.tree.oid, commit_options[:file][:path])
-        expect(entry[:filemode]).to eq(0100755)
-      end
-    end
-  end
-
-  describe :rename do
-    let(:repository) { Gitlab::Git::Repository.new(TEST_NORMAL_REPO_PATH) }
-    let(:rename_options) do
-      {
-        file: {
-          path: 'NEWCONTRIBUTING.md',
-          previous_path: 'CONTRIBUTING.md',
-          content: 'Lorem ipsum...',
-          update: true
-        },
-        author: {
-          email: 'user@example.com',
-          name: 'Test User',
-          time: Time.now
-        },
-        committer: {
-          email: 'user@example.com',
-          name: 'Test User',
-          time: Time.now
-        },
-        commit: {
-          message: 'Rename readme',
-          branch: 'master'
-        }
-      }
-    end
-
-    let(:rename_options2) do
-      {
-         file: {
-           content: 'Lorem ipsum...',
-           path: 'bin/new_executable',
-           previous_path: 'bin/executable',
-         },
-         author: {
-           email: 'user@example.com',
-           name: 'Test User',
-           time: Time.now
-         },
-         committer: {
-           email: 'user@example.com',
-           name: 'Test User',
-           time: Time.now
-         },
-         commit: {
-           message: 'Updates toberenamed.txt',
-           branch: 'master',
-           update_ref: false
-         }
-      }
-    end
-
-    it 'maintains file permissions when renaming' do
-      mode = 0o100755
-
-      Gitlab::Git::Blob.rename(repository, rename_options2)
-
-      expect(repository.rugged.index.get(rename_options2[:file][:path])[:mode]).to eq(mode)
-    end
-
-    it 'renames the file with commit and not change file permissions' do
-      ref = rename_options[:commit][:branch]
-
-      expect(repository.rugged.index.get('CONTRIBUTING.md')).not_to be_nil
-      expect { Gitlab::Git::Blob.rename(repository, rename_options) }.to change { repository.commit_count(ref) }.by(1)
-
-      expect(repository.rugged.index.get('CONTRIBUTING.md')).to be_nil
-      expect(repository.rugged.index.get('NEWCONTRIBUTING.md')).not_to be_nil
-    end
-  end
-
-  describe :remove do
-    let(:repository) { Gitlab::Git::Repository.new(TEST_REPO_PATH) }
-
-    let(:commit_options) do
-      {
-         file: {
-           path: 'README.md'
-         },
-         author: {
-           email: 'user@example.com',
-           name: 'Test User',
-           time: Time.now
-         },
-         committer: {
-           email: 'user@example.com',
-           name: 'Test User',
-           time: Time.now
-         },
-         commit: {
-           message: 'Remove readme',
-           branch: 'feature'
-         }
-      }
-    end
-
-    let(:commit_sha) { Gitlab::Git::Blob.remove(repository, commit_options) }
-    let(:commit) { repository.lookup(commit_sha) }
-    let(:blob) { Gitlab::Git::Blob.find(repository, commit_sha, "README.md") }
-
-    it 'should remove file with commit' do
-      # Commit message valid
-      expect(commit.message).to eq('Remove readme')
-
-      # File was removed
-      expect(blob).to be_nil
-    end
-  end
-
   describe :lfs_pointers do
     context 'file a valid lfs pointer' do
       let(:blob) do

spec/lib/gitlab/git/index_spec.rb

+require 'spec_helper'
+
+describe Gitlab::Git::Index, seed_helper: true do
+  let(:repository) { Gitlab::Git::Repository.new(TEST_REPO_PATH) }
+  let(:index) { described_class.new(repository) }
+
+  before do
+    index.read_tree(repository.lookup('master').tree)
+  end
+
+  describe '#create' do
+    let(:options) do
+      {
+        content: 'Lorem ipsum...',
+        file_path: 'documents/story.txt'
+      }
+    end
+
+    context 'when no file at that path exists' do
+      it 'creates the file in the index' do
+        index.create(options)
+
+        entry = index.get(options[:file_path])
+
+        expect(entry).not_to be_nil
+        expect(repository.lookup(entry[:oid]).content).to eq(options[:content])
+      end
+    end
+
+    context 'when a file at that path exists' do
+      before do
+        options[:file_path] = 'files/executables/ls'
+      end
+
+      it 'raises an error' do
+        expect { index.create(options) }.to raise_error('Filename already exists')
+      end
+    end
+
+    context 'when content is in base64' do
+      before do
+        options[:content] = Base64.encode64(options[:content])
+        options[:encoding] = 'base64'
+      end
+
+      it 'decodes base64' do
+        index.create(options)
+
+        entry = index.get(options[:file_path])
+        expect(repository.lookup(entry[:oid]).content).to eq(Base64.decode64(options[:content]))
+      end
+    end
+
+    context 'when content contains CRLF' do
+      before do
+        repository.autocrlf = :input
+        options[:content] = "Hello,\r\nWorld"
+      end
+
+      it 'converts to LF' do
+        index.create(options)
+
+        entry = index.get(options[:file_path])
+        expect(repository.lookup(entry[:oid]).content).to eq("Hello,\nWorld")
+      end
+    end
+  end
+
+  describe '#create_dir' do
+    let(:options) do
+      {
+        file_path: 'newdir'
+      }
+    end
+
+    context 'when no file or dir at that path exists' do
+      it 'creates the dir in the index' do
+        index.create_dir(options)
+
+        entry = index.get(options[:file_path] + '/.gitkeep')
+
+        expect(entry).not_to be_nil
+      end
+    end
+
+    context 'when a file at that path exists' do
+      before do
+        options[:file_path] = 'files/executables/ls'
+      end
+
+      it 'raises an error' do
+        expect { index.create_dir(options) }.to raise_error('Directory already exists as a file')
+      end
+    end
+
+    context 'when a directory at that path exists' do
+      before do
+        options[:file_path] = 'files/executables'
+      end
+
+      it 'raises an error' do
+        expect { index.create_dir(options) }.to raise_error('Directory already exists')
+      end
+    end
+  end
+
+  describe '#update' do
+    let(:options) do
+      {
+        content: 'Lorem ipsum...',
+        file_path: 'README.md'
+      }
+    end
+
+    context 'when no file at that path exists' do
+      before do
+        options[:file_path] = 'documents/story.txt'
+      end
+
+      it 'raises an error' do
+        expect { index.update(options) }.to raise_error("File doesn't exist")
+      end
+    end
+
+    context 'when a file at that path exists' do
+      it 'updates the file in the index' do
+        index.update(options)
+
+        entry = index.get(options[:file_path])
+
+        expect(repository.lookup(entry[:oid]).content).to eq(options[:content])
+      end
+
+      it 'preserves file mode' do
+        options[:file_path] = 'files/executables/ls'
+
+        index.update(options)
+
+        entry = index.get(options[:file_path])
+
+        expect(entry[:mode]).to eq(0100755)
+      end
+    end
+  end
+
+  describe '#move' do
+    let(:options) do
+      {
+        content: 'Lorem ipsum...',
+        previous_path: 'README.md',
+        file_path: 'NEWREADME.md'
+      }
+    end
+
+    context 'when no file at that path exists' do
+      it 'raises an error' do
+        options[:previous_path] = 'documents/story.txt'
+
+        expect { index.move(options) }.to raise_error("File doesn't exist")
+      end
+    end
+
+    context 'when a file at that path exists' do
+      it 'removes the old file in the index' do
+        index.move(options)
+
+        entry = index.get(options[:previous_path])
+
+        expect(entry).to be_nil
+      end
+
+      it 'creates the new file in the index' do
+        index.move(options)
+
+        entry = index.get(options[:file_path])
+
+        expect(entry).not_to be_nil
+        expect(repository.lookup(entry[:oid]).content).to eq(options[:content])
+      end
+
+      it 'preserves file mode' do
+        options[:previous_path] = 'files/executables/ls'
+
+        index.move(options)
+
+        entry = index.get(options[:file_path])
+
+        expect(entry[:mode]).to eq(0100755)
+      end
+    end
+  end
+
+  describe '#delete' do
+    let(:options) do
+      {
+        file_path: 'README.md'
+      }
+    end
+
+    context 'when no file at that path exists' do
+      before do
+        options[:file_path] = 'documents/story.txt'
+      end
+
+      it 'raises an error' do
+        expect { index.delete(options) }.to raise_error("File doesn't exist")
+      end
+    end
+
+    context 'when a file at that path exists' do
+      it 'removes the file in the index' do
+        index.delete(options)
+
+        entry = index.get(options[:file_path])
+
+        expect(entry).to be_nil
+      end
+    end
+  end
+end

spec/lib/gitlab/git/repository_spec.rb

@@ -844,81 +844,6 @@ describe Gitlab::Git::Repository, seed_helper: true do
     end
   end
 
-  describe '#mkdir' do
-    let(:commit_options) do
-      {
-        author: {
-          email: 'user@example.com',
-          name: 'Test User',
-          time: Time.now
-        },
-        committer: {
-          email: 'user@example.com',
-          name: 'Test User',
-          time: Time.now
-        },
-        commit: {
-          message: 'Test message',
-          branch: 'refs/heads/fix',
-        }
-      }
-    end
-
-    def generate_diff_for_path(path)
-      "diff --git a/#{path}/.gitkeep b/#{path}/.gitkeep
-new file mode 100644
-index 0000000..e69de29
---- /dev/null
-+++ b/#{path}/.gitkeep\n"
-    end
-
-    shared_examples 'mkdir diff check' do |path, expected_path|
-      it 'creates a directory' do
-        result = repository.mkdir(path, commit_options)
-        expect(result).not_to eq(nil)
-
-        # Verify another mkdir doesn't create a directory that already exists
-        expect{ repository.mkdir(path, commit_options) }.to raise_error('Directory already exists')
-      end
-    end
-
-    describe 'creates a directory in root directory' do
-      it_should_behave_like 'mkdir diff check', 'new_dir', 'new_dir'
-    end
-
-    describe 'creates a directory in subdirectory' do
-      it_should_behave_like 'mkdir diff check', 'files/ruby/test', 'files/ruby/test'
-    end
-
-    describe 'creates a directory in subdirectory with a slash' do
-      it_should_behave_like 'mkdir diff check', '/files/ruby/test2', 'files/ruby/test2'
-    end
-
-    describe 'creates a directory in subdirectory with multiple slashes' do
-      it_should_behave_like 'mkdir diff check', '//files/ruby/test3', 'files/ruby/test3'
-    end
-
-    describe 'handles relative paths' do
-      it_should_behave_like 'mkdir diff check', 'files/ruby/../test_relative', 'files/test_relative'
-    end
-
-    describe 'creates nested directories' do
-      it_should_behave_like 'mkdir diff check', 'files/missing/test', 'files/missing/test'
-    end
-
-    it 'does not attempt to create a directory with invalid relative path' do
-      expect{ repository.mkdir('../files/missing/test', commit_options) }.to raise_error('Invalid path')
-    end
-
-    it 'does not attempt to overwrite a file' do
-      expect{ repository.mkdir('README.md', commit_options) }.to raise_error('Directory already exists as a file')
-    end
-
-    it 'does not attempt to overwrite a directory' do
-      expect{ repository.mkdir('files', commit_options) }.to raise_error('Directory already exists')
-    end
-  end
-
   describe "#ls_files" do
     let(:master_file_paths) { repository.ls_files("master") }
     let(:not_existed_branch) { repository.ls_files("not_existed_branch") }

spec/lib/gitlab/git_access_spec.rb

@@ -209,13 +209,12 @@ describe Gitlab::GitAccess, lib: true do
         stub_git_hooks
         project.repository.add_branch(user, unprotected_branch, 'feature')
         target_branch = project.repository.lookup('feature')
-        source_branch = project.repository.commit_file(
+        source_branch = project.repository.create_file(
           user,
           FFaker::InternetSE.login_user_name,
           FFaker::HipsterIpsum.paragraph,
           message: FFaker::HipsterIpsum.sentence,
-          branch_name: unprotected_branch,
-          update: false)
+          branch_name: unprotected_branch)
         rugged = project.repository.rugged
         author = { email: "email@example.com", time: Time.now, name: "Example Git User" }
 

spec/models/cycle_analytics/production_spec.rb

@@ -21,13 +21,12 @@ describe 'CycleAnalytics#production', feature: true do
        ["production deploy happens after merge request is merged (along with other changes)",
         lambda do |context, data|
           # Make other changes on master
-          sha = context.project.repository.commit_file(
+          sha = context.project.repository.create_file(
             context.user,
             context.random_git_name,
             'content',
             message: 'commit message',
-            branch_name: 'master',
-            update: false)
+            branch_name: 'master')
           context.project.repository.commit(sha)
 
           context.deploy_master

spec/models/cycle_analytics/staging_spec.rb

@@ -26,13 +26,12 @@ describe 'CycleAnalytics#staging', feature: true do
                             ["production deploy happens after merge request is merged (along with other changes)",
                              lambda do |context, data|
                                # Make other changes on master
-                               sha = context.project.repository.commit_file(
+                               sha = context.project.repository.create_file(
                                  context.user,
                                  context.random_git_name,
                                  'content',
                                  message: 'commit message',
-                                 branch_name: 'master',
-                                 update: false)
+                                 branch_name: 'master')
                                context.project.repository.commit(sha)
 
                                context.deploy_master

spec/models/project_spec.rb

@@ -1765,7 +1765,7 @@ describe Project, models: true do
     end
 
     before do
-      project.repository.commit_file(User.last, '.gitlab/route-map.yml', route_map, message: 'Add .gitlab/route-map.yml', branch_name: 'master', update: false)
+      project.repository.create_file(User.last, '.gitlab/route-map.yml', route_map, message: 'Add .gitlab/route-map.yml', branch_name: 'master')
     end
 
     context 'when there is a .gitlab/route-map.yml at the commit' do

spec/requests/api/files_spec.rb

@@ -127,7 +127,7 @@ describe API::Files, api: true  do
     end
 
     it "returns a 400 if editor fails to create file" do
-      allow_any_instance_of(Repository).to receive(:commit_file).
+      allow_any_instance_of(Repository).to receive(:create_file).
         and_return(false)
 
       post api("/projects/#{project.id}/repository/files", user), valid_params
@@ -215,7 +215,7 @@ describe API::Files, api: true  do
     end
 
     it "returns a 400 if fails to create file" do
-      allow_any_instance_of(Repository).to receive(:remove_file).and_return(false)
+      allow_any_instance_of(Repository).to receive(:delete_file).and_return(false)
 
       delete api("/projects/#{project.id}/repository/files", user), valid_params
 

spec/requests/api/v3/files_spec.rb

@@ -127,7 +127,7 @@ describe API::V3::Files, api: true  do
     end
 
     it "returns a 400 if editor fails to create file" do
-      allow_any_instance_of(Repository).to receive(:commit_file).
+      allow_any_instance_of(Repository).to receive(:create_file).
         and_return(false)
 
       post v3_api("/projects/#{project.id}/repository/files", user), valid_params
@@ -215,7 +215,7 @@ describe API::V3::Files, api: true  do
     end
 
     it "returns a 400 if fails to create file" do
-      allow_any_instance_of(Repository).to receive(:remove_file).and_return(false)
+      allow_any_instance_of(Repository).to receive(:delete_file).and_return(false)
 
       delete v3_api("/projects/#{project.id}/repository/files", user), valid_params
 

spec/services/merge_requests/resolve_service_spec.rb

@@ -66,13 +66,12 @@ describe MergeRequests::ResolveService do
 
       context 'when the source project is a fork and does not contain the HEAD of the target branch' do
         let!(:target_head) do
-          project.repository.commit_file(
+          project.repository.create_file(
             user,
             'new-file-in-target',
             '',
             message: 'Add new file in target',
-            branch_name: 'conflict-start',
-            update: false)
+            branch_name: 'conflict-start')
         end
 
         before do

spec/support/cycle_analytics_helpers.rb

@@ -9,14 +9,7 @@ module CycleAnalyticsHelpers
     commit_shas = Array.new(count) do |index|
       filename = random_git_name
 
-      options = {
-        committer: project.repository.user_to_committer(user),
-        author: project.repository.user_to_committer(user),
-        commit: { message: message, branch: branch_name, update_ref: true },
-        file: { content: "content", path: filename, update: false }
-      }
-
-      commit_sha = Gitlab::Git::Blob.commit(project.repository, options)
+      commit_sha = project.repository.create_file(user, filename, "content", message: message, branch_name: branch_name)
       project.repository.commit(commit_sha)
 
       commit_sha
@@ -35,13 +28,12 @@ module CycleAnalyticsHelpers
       project.repository.add_branch(user, source_branch, 'master')
     end
 
-    sha = project.repository.commit_file(
+    sha = project.repository.create_file(
       user,
       random_git_name,
       'content',
       message: 'commit message',
-      branch_name: source_branch,
-      update: false)
+      branch_name: source_branch)
     project.repository.commit(sha)
 
     opts = {