Commit 4f03bd9c authored by Marco Mariani's avatar Marco Mariani

added R language component

parent 3bb44030
# A minimal software release to test the r-language component.
[buildout]
extends =
../../stack/slapos.cfg
......
......@@ -49,5 +49,4 @@ install_cmd =
# make ptcheck # sanity check parallel
make time # check if lib is fast
make install # copy libs to install dir
update_cmd = ${:install_cmd}
[buildout]
extends =
../gcc/buildout.cfg
parts =
gcc-fortran
r-language
[r-language]
recipe = slapos.recipe.cmmi
url = http://cran.irsn.fr/src/base/R-3/R-3.1.0.tar.gz
md5sum = a1ee52446bee81820409661e6d114ab1
configure-options =
--with-readline=no
--with-x=no
--enable-R-shlib
environment =
CC=${gcc-fortran:location}/bin/gcc
F77=${gcc-fortran:location}/bin/gfortran
LDFLAGS=-L${gcc-fortran:location}/lib64 -Wl,-rpath=${gcc-fortran:location}/lib64
# A minimal software release to test the r-language component (depends on gfortran).
[buildout]
extends =
../../stack/slapos.cfg
../../component/gcc/buildout.cfg
../../component/r-language/buildout.cfg
parts =
eggs
gcc-fortran
r-language
[eggs]
recipe = zc.recipe.egg
eggs =
${lxml-python:egg}
slapos.cookbook
[buildout]
# A proper SR for Dream with no external dependecies (fortran, etc),
# but which uses a virtualenv to ease packaging on the python side.
extends =
../../stack/slapos.cfg
../../component/git/buildout.cfg
../../component/gcc/buildout.cfg
../../component/libatlas/buildout.cfg
../../component/libblas/buildout.cfg
../../component/r-language/buildout.cfg
parts =
python2.7-virtualenv
......@@ -13,13 +17,10 @@ parts =
gcc-fortran
libatlas
libblas
r-language
sh-dream-environment
scikit-env
# scikit-env
# XXX ideally, libatlas should use this version
#[gcc-download]
#url = http://www.mirrorservice.org/sites/sourceware.org/pub/gcc/releases/gcc-4.7.0/gcc-4.7.0.tar.bz2
#md5sum = 2a0f1d99fda235c29d40b561f81d9a77
[eggs]
recipe = zc.recipe.egg
......@@ -50,11 +51,31 @@ install_cmd =
pip install flask
pip install pyparsing==1.5.7
pip install pydot
#export LDFLAGS="-lncurses"
pip install rpy2
# export LDFLAGS="-lncurses"
export PATH=${r-language:location}/bin:$PATH
# pip install rpy2
# clone repo for:
# bug fix - https://bitbucket.org/lgautier/rpy2/issue/183
# (may switch to released egg later)
pip install mercurial
hg clone -b version_2.4.x https://marco.mariani@bitbucket.org/marco.mariani/rpy2
cd rpy2
python setup.py install
git clone http://git.erp5.org/repos/dream.git -b marco
cd dream
python setup.py install
update_cmd = ${:install_cmd}
[sh-dream-environment]
# environment needed for running/debugging the applications, exported to a shell script to be sourced.
recipe = collective.recipe.template
output = ${buildout:directory}/environment.sh
input = inline:
export PATH="${r-language:location}/bin:$PATH"
export LD_LIBRARY_PATH="${r-language:location}/lib/R/lib:$LD_LIBRARY_PATH"
[versions]
......
[buildout]
# Dream Software Release with external dependencies.
# Depends on gfortran, libatlas, r-base-dev, etc... installed by apt-get.
extends =
../../stack/slapos.cfg
../../component/git/buildout.cfg
# ../../component/libatlas/buildout.cfg
parts =
python2.7-virtualenv
......
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