testnode: update corrupted index test for git 2.17.0
The way of truncating the index file was an error in git 2.11.0, but it was not an error with git 2.17.0. /reviewed-on !863
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The way of truncating the index file was an error in git 2.11.0, but it was not an error with git 2.17.0. /reviewed-on !863