This is a partial correction to the original fix for bug#37098
   Get rid of "Installed (but unpackaged)" files in the RPM build
which used a wrong variable.

man/Makefile.am:
  Correction to the original fix:
  The variable to use is "$(mandir)", "$(manlibdir)" was wrong.

Updating test for smaller InnoDB buffer pool size used by the testsuite.

fix is to run the testsuite with the same InnoDB options (buffer pool size,
log file size etc) as we always ran it for the InnoDB builtin in 5.1.

Changes to ha_innodb.cc are not propagated to plugin, they will come back
via Oracle/Innobase if needed.

until it's fixed in a parent tree

Putting back Summit defaults (removing them didn't seem to have a good effect on pushbuild2).

widely used, in replication (delete_allow_opened) and for named
pipe support. We do not support Win9x anymore.

sql/sql_insert.cc:
  fix wrong merge

to fix test failures on OS X PPC and Sparc64

The problem is that the lexer could inadvertently skip over the
end of a query being parsed if it encountered a malformed multibyte
character. A specially crated query string could cause the lexer
to jump up to six bytes past the end of the query buffer. Another
problem was that the laxer could use unfiltered user input as
a signed array index for the parser maps (having upper and lower
bounds 0 and 256 respectively).

The solution is to ensure that the lexer only skips over well-formed
multibyte characters and that the index value of the parser maps
is always a unsigned value.

mysql-test/r/ctype_recoding.result:
  Update test case result: ending backtick is not skipped over anymore.
sql/sql_lex.cc:
  Characters being analyzed must be unsigned as they can be
  used as indexes for the parser maps. Only skip over if the
  string is a valid multi-byte sequence.
tests/mysql_client_test.c:
  Add test case for Bug#45010

storage/innobase/CMakeLists.txt:
  ${WIN64} fails if variable is undefined

Fixes to tests and their results, to account for differences between InnoDB 1.0.4 and the old builtin.
All committed result differences have either been verified by me or copied from Oracle's provided
results (storage/innodb_plugin/mysql-test/*.result, storage/innodb_plugin/mysql-test/patches).

mysql-test/r/information_schema.result:
  queries changed a bit
mysql-test/r/information_schema_db.result:
  queries changed a bit
mysql-test/r/innodb-autoinc.result:
  importing piece from storage/innodb_plugin/mysql-test/innodb-autoinc.result
mysql-test/r/innodb.result:
  result close to storage/innodb_plugin/innodb.result, except 4095 pages instead of 8191, which makes
  sense as Summit runs with a buffer pool of 64M, whereas the mentioned result file was made with
  a buffer pool of 128M.
mysql-test/r/mysqlshow.result:
  InnoDB I_S tables have arrived
mysql-test/suite/funcs_1/r/is_columns_is.result:
  queries changed a bit
mysql-test/suite/funcs_1/r/is_columns_is_embedded.result:
  queries changed a bit
mysql-test/suite/funcs_1/r/is_tables_is.result:
  queries changed a bit
mysql-test/suite/funcs_1/t/is_columns_is.test:
  making I_S queries ignore InnoDB I_S tables
mysql-test/suite/funcs_1/t/is_columns_is_embedded.test:
  making I_S queries ignore InnoDB I_S tables
mysql-test/suite/funcs_1/t/is_tables_is.test:
  making I_S queries ignore InnoDB I_S tables
mysql-test/suite/innodb/r/innodb-zip.result:
  result update
mysql-test/suite/innodb/t/innodb-zip.test:
  439, as size of prefix key, throws error with certain system zlib (ubuntu
  "intrepid") but not with zlib bundled with MySQL, because zlib's
  compressBound() are different (and used by InnoDB's page_zip_empty_size()).
mysql-test/suite/sys_vars/r/innodb_file_per_table_basic.result:
  result update
mysql-test/suite/sys_vars/r/innodb_lock_wait_timeout_basic.result:
  result update
mysql-test/suite/sys_vars/r/innodb_sync_spin_loops_basic_32.result:
  result update (default value is 30 in the plugin, 20 in the builtin)
mysql-test/suite/sys_vars/r/innodb_sync_spin_loops_basic_64.result:
  result update (default value is 30 in the plugin, 20 in the builtin)
mysql-test/suite/sys_vars/r/table_definition_cache_basic.result:
  result update (default value is 400 in Summit)
mysql-test/suite/sys_vars/t/innodb_file_per_table_basic.test:
  variable is writable in the plugin (patch from Oracle)
mysql-test/suite/sys_vars/t/innodb_lock_wait_timeout_basic.test:
  variable is per-session in the plugin (patch from Oracle)
mysql-test/t/information_schema.test:
  making I_S queries ignore InnoDB I_S tables
mysql-test/t/information_schema_db.test:
  making I_S queries ignore InnoDB I_S tables
mysql-test/t/innodb-autoinc.test:
  importing piece from storage/innodb_plugin/mysql-test/innodb-autoinc.test
mysql-test/t/innodb.test:
  importing most of storage/innodb_plugin/t/innodb.test. Most replace_result were not needed (no path printed), some where (for --embedded).
mysql-test/t/mysqlshow.test:
  output of test now depends on InnoDB or not InnoDB. As there is no way to make mysqlshow
  produce a single output in those two cases (no way to make it exclude InnoDB I_S
  tables), let the test depend on InnoDB, it isn't a very selective condition, and the
  test is simple enough.
storage/innobase/CMakeLists.txt:
  thanks Vlad for the noticing () vs {}

Problem 1:
When the 'Using index' optimization is used, the optimizer may still - after
cost-based optimization - decide to use another index in order to avoid using
a temporary table. But when this happens, the flag to the storage engine to 
read index only (not table) was still set. Fixed by resetting the flag in the 
storage engine and TABLE structure in the above scenario, unless the new index
allows for the same optimization.
Problem 2:
When a 'ref' access method was employed by cost-based optimizer, (when the column
is non-NULLable), it was assumed that it needed no initialization if 'quick' access
methods (since they are based on range scan). When ORDER BY optimization overrides 
the decision, however, it expects to have this initialized and hence crashes. 
Fixed in 5.1 (was fixed in 6.0 already) by initializing 'quick' even when there's 
'ref' access. 

mysql-test/r/order_by.result:
  Bug#46454: Test result.
mysql-test/t/order_by.test:
  Bug#46454: Test case.
sql/sql_select.cc:
  Bug#46454: 
  Problem 1 fixed in make_join_select()
  Problem 2 fixed in test_if_skip_sort_order()
sql/table.h:
  Bug#46454: Added comment to field.

layout as we always had in trees containing only the builtin
2) win\configure.js WITH_INNOBASE_STORAGE_ENGINE still works.

storage/innobase/CMakeLists.txt:
  fix to new directory name (and like 5.1)
storage/innobase/Makefile.am:
  fix to new directory name (and like 5.1)
storage/innobase/handler/ha_innodb.cc:
  fix to new directory name (and like 5.1)
storage/innobase/plug.in:
  fix to new directory name (and like 5.1)

- Remove offensive quotes.

                    column on partitioned table
      
      
An assertion 'ASSERT_COULUMN_MARKED_FOR_READ' is failed if the query 
is executed with index containing double column on partitioned table.
The problem is that assertion expects all the fields which are read,
to be in the read_set.
      
In this query only the field 'a' is in the readset as the tables in
the query are joined by the field 'a' and so the assertion fails 
expecting other field 'b'.
      
Since the function cmp() is just comparison of two parameters passed, 
the assertion is not required.
      
Fixed by removing the assertion in the double fields comparision
function and also fixed the index initialization to do ordered
index scan with RW LOCK which ensures all the fields from a key are in
the read_set.
 

Note: this bug is not reproducible with other datatypes because the
      assertion doesn't exist in comparision function for other 
      datatypes.

mysql-test/r/partition.result:
  Testcase for BUG#45816
mysql-test/t/partition.test:
  Testcase for BUG#45816
sql/field.cc:
  Removed the assertion ASSERT_COLUMN_MARED_FOR_READ in Field_double::cmp()
  function
sql/ha_partition.cc:
  Fixed index_int() method to make it initialize the read_set properly if
  ordered index scan with RW lock is requested.

The server shutdown and start code triggered the valgrind failures 
within nptl_pthread_exit_hack_handler on Ubuntu 9.04, x86 (but not amd64) 
in rpl_trigger.test file.

For fixing the bug, suppress valgrind failures within nptl_pthread_exit_hack_handler 
on Ubuntu 9.04, x86 (but not amd64). Because the server shutdown and start
code has been heavily used in mysql test set.

mysql-test/valgrind.supp:
  Add code for suppressing valgrind failures within nptl_pthread_exit_hack_handler on Ubuntu 9.04, x86 (but not amd64).

mysql-test/lib/mtr_cases.pm:
  there is only one InnoDB in this tree, no need to run an InnoDB test twice
mysql-test/suite/innodb/include/have_innodb_plugin.inc:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb-analyze.test:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb-timeout.test:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb-use-sys-malloc.test:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb-zip.test:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb_bug36169.test:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb_bug36172.test:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb_file_format.test:
  plugin is now the builtin
mysql-test/suite/innodb/t/innodb_information_schema.test:
  plugin is now the builtin
storage/innodb_plugin/plug.in:
  build libinnobase.a, to have it built-in

"Patch to fix bug 38551": it was a manual backport (2008-10-15) of
http://lists.mysql.com/commits/56418.
But that was an early, non-final patch from the fixer of this bug (TheK):
after that backport was made by Mikael, TheK decided to do a different fix,
which was finally pushed into 6.0.
Then 5.1's code was changed for some other reasons, so now we have a
conflict between the old never-approved TheK patch backported to Summit and
the latest 5.1. The backport cannot stay, it has to be removed due to
the conflict, and then rewritten if desired.

bzr branch mysql-5.1-performance-version mysql-trunk # Summit
cd mysql-trunk
bzr merge mysql-5.1-innodb_plugin # which is 5.1 + Innodb plugin 
bzr rm innobase # remove the builtin
Next step: build, test fixes.

Reverted lost in the merge line.

Install procedure does not copy *.inc files located under the mysql-test/t directory.
Therefore, this patch moves the rpl_trigger.inc to the mysql-test/include directory.