Conflicts:
	topydo/cli/Main.py

-c, -d and -t are supported to specify alternative configuration files,
archive files or todo.txt files respectively.

The configuration file specified with -c has the highest priority.

The files specified with -d or -t are always used regardless of the
configuration.

No dependency tracking is needed and gives a huge performance
improvement for huge done.txt files.

The subclass implements the dependency tracking of todos, which can be
quite intensive for huge todo.txt files, and is not always needed. For
instance, dependency tracking is not needed for archiving.

Since they're looked up quite often, they should be cached insteadof going through the ConfigParser machinery.

Most of the time was spent in the todo_by_hash function which is
not efficient enough for large todo files.

This optimizes for large todo files (or large archive files). For each
added todo item, _update_parent_cache was called N times, which in turn
calls todo_by_hash which also does N iterations, where N is the number
of todos added at that point. This doesn't scale with a couple of
hundreds of todo items.

Instead, introduce a list variant of add_todo which does the cache
update only once.