Bump protocol version

Commit ad43dcd3 should have bumped it as well.

BUGS.rst

@@ -4,15 +4,6 @@ or promised features of NEO (marked with N).
 
 All the listed bugs will be fixed with high priority.
 
-(N) Storage failure or update may lead to POSException or break undoLog()
--------------------------------------------------------------------------
-
-Storage nodes are only queried once at most and if all (for the requested
-partition) failed, the client raises instead of asking the master whether it
-had an up-to-date partition table (and retry if useful).
-
-In the case of undoLog(), incomplete results may be returned.
-
 (N) A backup cell may be wrongly marked as corrupted while checking replicas
 ----------------------------------------------------------------------------
 

TODO

@@ -116,8 +116,6 @@
     - Merge Application into Storage (SPEED)
     - Optimize cache.py by rewriting it either in C or Cython (LOAD LATENCY)
     - Use generic bootstrap module (CODE)
-    - If too many storage nodes are dead, the client should check the partition
-      table hasn't changed by pinging the master and retry if necessary.
 
     Admin
     - Make admin node able to monitor multiple clusters simultaneously

neo/client/exception.py

@@ -19,6 +19,9 @@ from ZODB import POSException
 class NEOStorageError(POSException.StorageError):
     pass
 
+class NEOStorageReadRetry(NEOStorageError):
+    pass
+
 class NEOStorageNotFoundError(NEOStorageError):
     pass
 

neo/client/handlers/master.py

@@ -149,8 +149,8 @@ class PrimaryNotificationsHandler(MTEventHandler):
             for txn_context in app.txn_contexts():
                 txn_context.error = msg
         try:
-            del app.pt
-        except AttributeError:
+            app.__dict__.pop('pt').clear()
+        except KeyError:
             pass
         app.primary_master_node = None
         super(PrimaryNotificationsHandler, self).connectionClosed(conn)

neo/client/handlers/storage.py

@@ -25,7 +25,7 @@ from neo.lib.handler import MTEventHandler
 from . import AnswerBaseHandler
 from ..transactions import Transaction
 from ..exception import NEOStorageError, NEOStorageNotFoundError
-from ..exception import NEOStorageDoesNotExistError
+from ..exception import NEOStorageReadRetry, NEOStorageDoesNotExistError
 
 class StorageEventHandler(MTEventHandler):
 
@@ -187,11 +187,16 @@ class StorageAnswersHandler(AnswerBaseHandler):
         # This can happen when requiring txn informations
         raise NEOStorageNotFoundError(message)
 
+    def nonReadableCell(self, conn, message):
+        logging.info('non readable cell')
+        raise NEOStorageReadRetry(True)
+
     def answerTIDs(self, conn, tid_list, tid_set):
         tid_set.update(tid_list)
 
-    def answerObjectUndoSerial(self, conn, object_tid_dict,
-                               undo_object_tid_dict):
+    def answerObjectUndoSerial(self, conn, object_tid_dict, partition,
+                               partition_oid_dict, undo_object_tid_dict):
+        del partition_oid_dict[partition]
         undo_object_tid_dict.update(object_tid_dict)
 
     def answerFinalTID(self, conn, tid):

neo/client/pool.py

@@ -15,14 +15,12 @@
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 import time
-from random import shuffle
-
 from neo.lib import logging
 from neo.lib.locking import Lock
 from neo.lib.protocol import NodeTypes, Packets
 from neo.lib.connection import MTClientConnection, ConnectionClosed
 from neo.lib.exception import NodeNotReady
-from .exception import NEOPrimaryMasterLost, NEOStorageError
+from .exception import NEOPrimaryMasterLost
 
 # How long before we might retry a connection to a node to which connection
 # failed in the past.
@@ -84,40 +82,6 @@ class ConnectionPool(object):
             self.node_failure_dict.pop(uuid, None)
         return CELL_GOOD
 
-    def getConnForCell(self, cell):
-        return self.getConnForNode(cell.getNode())
-
-    def iterateForObject(self, object_id):
-        """ Iterate over nodes managing an object """
-        pt = self.app.pt
-        if type(object_id) is str:
-            object_id = pt.getPartition(object_id)
-        cell_list = pt.getCellList(object_id, True)
-        if not cell_list:
-            raise NEOStorageError('no storage available')
-        getConnForNode = self.getConnForNode
-        while 1:
-            new_cell_list = []
-            # Shuffle to randomise node to access...
-            shuffle(cell_list)
-            # ...and sort with non-unique keys, to prioritise ranges of
-            # randomised entries.
-            cell_list.sort(key=self.getCellSortKey)
-            for cell in cell_list:
-                node = cell.getNode()
-                conn = getConnForNode(node)
-                if conn is not None:
-                    yield conn
-                # Re-check if node is running, as our knowledge of its
-                # state can have changed during connection attempt.
-                elif node.isRunning():
-                    new_cell_list.append(cell)
-            if not new_cell_list:
-                break
-            cell_list = new_cell_list
-        if self.app.master_conn is None:
-            raise NEOPrimaryMasterLost
-
     def getConnForNode(self, node):
         """Return a locked connection object to a given node
         If no connection exists, create a new one"""

neo/lib/handler.py

@@ -20,8 +20,8 @@ from . import logging
 from .connection import ConnectionClosed
 from .protocol import (
     NodeStates, Packets, Errors, BackendNotImplemented,
-    BrokenNodeDisallowedError, NotReadyError, PacketMalformedError,
-    ProtocolError, UnexpectedPacketError)
+    BrokenNodeDisallowedError, NonReadableCell, NotReadyError,
+    PacketMalformedError, ProtocolError, UnexpectedPacketError)
 from .util import cached_property
 
 
@@ -101,6 +101,8 @@ class EventHandler(object):
             conn.answer(Errors.BackendNotImplemented(
                 "%s.%s does not implement %s"
                 % (m.im_class.__module__, m.im_class.__name__, m.__name__)))
+        except NonReadableCell, e:
+            conn.answer(Errors.NonReadableCell())
         except AssertionError:
             e = sys.exc_info()
             try:

neo/lib/protocol.py

@@ -20,7 +20,7 @@ import traceback
 from cStringIO import StringIO
 from struct import Struct
 
-PROTOCOL_VERSION = 11
+PROTOCOL_VERSION = 12
 
 # Size restrictions.
 MIN_PACKET_SIZE = 10
@@ -74,6 +74,7 @@ def ErrorCodes():
     REPLICATION_ERROR
     CHECKING_ERROR
     BACKEND_NOT_IMPLEMENTED
+    NON_READABLE_CELL
     READ_ONLY_ACCESS
     INCOMPLETE_TRANSACTION
 
@@ -216,6 +217,19 @@ class BrokenNodeDisallowedError(ProtocolError):
 class BackendNotImplemented(Exception):
     """ Method not implemented by backend storage """
 
+class NonReadableCell(Exception):
+    """Read-access to a cell that is actually non-readable
+
+    This happens in case of race condition at processing partition table
+    updates: client's PT is older or newer than storage's. The latter case is
+    possible because the master must validate any end of replication, which
+    means that the storage node can't anticipate the PT update (concurrently,
+    there may be a first tweaks that moves the replicated cell to another node,
+    and a second one that moves it back).
+
+    On such event, the client must retry, preferably another cell.
+    """
+
 class Packet(object):
     """
         Base class for any packet definition. The _fmt class attribute must be
@@ -823,6 +837,12 @@ class UnfinishedTransactions(Packet):
     Ask unfinished transactions  S -> PM.
     Answer unfinished transactions  PM -> S.
     """
+    _fmt = PStruct('ask_unfinished_transactions',
+        PList('row_list',
+            PNumber('offset'),
+        ),
+    )
+
     _answer = PStruct('answer_unfinished_transactions',
         PTID('max_tid'),
         PList('tid_list',

neo/master/handlers/storage.py

@@ -15,9 +15,11 @@
 # along with this program.  If not, see <http://www.gnu.org/licenses/>.
 
 from neo.lib import logging
-from neo.lib.protocol import CellStates, ClusterStates, Packets, ProtocolError
+from neo.lib.protocol import (CellStates, ClusterStates, Packets, ProtocolError,
+    uuid_str)
 from neo.lib.exception import StoppedOperation
 from neo.lib.pt import PartitionTableException
+from neo.lib.util import dump
 from . import BaseServiceHandler
 
 
@@ -51,7 +53,7 @@ class StorageServiceHandler(BaseServiceHandler):
         if app.packing is not None:
             self.answerPack(conn, False)
 
-    def askUnfinishedTransactions(self, conn):
+    def askUnfinishedTransactions(self, conn, offset_list):
         app = self.app
         if app.backup_tid:
             last_tid = app.pt.getBackupTid(min)
@@ -64,6 +66,7 @@ class StorageServiceHandler(BaseServiceHandler):
             pending_list = app.tm.registerForNotification(conn.getUUID())
         p = Packets.AnswerUnfinishedTransactions(last_tid, pending_list)
         conn.answer(p)
+        app.pt.updatable(conn.getUUID(), offset_list)
 
     def notifyDeadlock(self, conn, *args):
         self.app.tm.deadlock(conn.getUUID(), *args)
@@ -84,7 +87,8 @@ class StorageServiceHandler(BaseServiceHandler):
 
     def notifyReplicationDone(self, conn, offset, tid):
         app = self.app
-        node = app.nm.getByUUID(conn.getUUID())
+        uuid = conn.getUUID()
+        node = app.nm.getByUUID(uuid)
         if app.backup_tid:
             cell_list = app.backup_app.notifyReplicationDone(node, offset, tid)
             if not cell_list:
@@ -92,11 +96,15 @@ class StorageServiceHandler(BaseServiceHandler):
         else:
             try:
                 cell_list = self.app.pt.setUpToDate(node, offset)
-                if not cell_list:
-                    raise ProtocolError('Non-outdated partition')
             except PartitionTableException, e:
                 raise ProtocolError(str(e))
-        logging.debug("%s is up for offset %s", node, offset)
+            if not cell_list:
+                logging.info("ignored late notification that"
+                    " %s has replicated partition %s up to %s",
+                    uuid_str(uuid), offset, dump(tid))
+                return
+        logging.debug("%s is up for partition %s (tid=%s)",
+                      uuid_str(uuid), offset, dump(tid))
         self.app.broadcastPartitionChanges(cell_list)
 
     def answerPack(self, conn, status):

neo/master/pt.py

@@ -23,11 +23,18 @@ from neo.lib.protocol import CellStates, ZERO_TID
 class Cell(neo.lib.pt.Cell):
 
     replicating = ZERO_TID
+    updatable = False
 
     def setState(self, state):
         readable = self.isReadable()
         super(Cell, self).setState(state)
-        if readable and not self.isReadable():
+        if self.isReadable():
+            return
+        try:
+            del self.updatable
+        except AttributeError:
+            pass
+        if readable:
             try:
                 del self.backup_tid, self.replicating
             except AttributeError:
@@ -157,7 +164,7 @@ class PartitionTable(neo.lib.pt.PartitionTable):
         # check the partition is assigned and known as outdated
         for cell in self.getCellList(offset):
             if cell.getUUID() == uuid:
-                if cell.isOutOfDate():
+                if cell.isOutOfDate() and cell.updatable:
                     break
                 return
         else:
@@ -300,6 +307,12 @@ class PartitionTable(neo.lib.pt.PartitionTable):
             logging.warning(self._first_outdated_message)
         return change_list
 
+    def updatable(self, uuid, offset_list):
+        for offset in offset_list:
+            for cell in self.partition_list[offset]:
+                if cell.getUUID() == uuid and not cell.isReadable():
+                    cell.updatable = True
+
     def iterNodeCell(self, node):
         for offset, row in enumerate(self.partition_list):
             for cell in row:

neo/storage/database/importer.py

@@ -283,11 +283,11 @@ class ImporterDatabaseManager(DatabaseManager):
         super(ImporterDatabaseManager, self).__init__(*args, **kw)
         implements(self, """_getNextTID checkSerialRange checkTIDRange
             deleteObject deleteTransaction dropPartitions getLastTID
-            getReplicationObjectList getTIDList nonempty""".split())
+            getReplicationObjectList _getTIDList nonempty""".split())
 
-    _uncommitted_data = property(
-        lambda self: self.db._uncommitted_data,
-        lambda self, value: setattr(self.db, "_uncommitted_data", value))
+    _getPartition = property(lambda self: self.db._getPartition)
+    _getReadablePartition = property(lambda self: self.db._getReadablePartition)
+    _uncommitted_data = property(lambda self: self.db._uncommitted_data)
 
     def _parse(self, database):
         config = SafeConfigParser()
@@ -300,8 +300,8 @@ class ImporterDatabaseManager(DatabaseManager):
         self.compress = main.get('compress', 1)
         self.db = buildDatabaseManager(main['adapter'],
             (main['database'], main.get('engine'), main['wait']))
-        for x in """query erase getConfiguration _setConfiguration
-                    getPartitionTable changePartitionTable
+        for x in """getConfiguration _setConfiguration setNumPartitions
+                    query erase getPartitionTable changePartitionTable
                     getUnfinishedTIDDict dropUnfinishedData abortTransaction
                     storeTransaction lockTransaction unlockTransaction
                     loadData storeData getOrphanList _pruneData deferCommit
@@ -315,21 +315,14 @@ class ImporterDatabaseManager(DatabaseManager):
         self.db.commit()
         self._last_commit = time.time()
 
-    def setNumPartitions(self, num_partitions):
-        self.db.setNumPartitions(num_partitions)
-        try:
-            del self._getPartition
-        except AttributeError:
-            pass
-
     def close(self):
         self.db.close()
         if isinstance(self.zodb, list): # _setup called
             for zodb in self.zodb:
                 zodb.close()
 
-    def _setup(self):
-        self.db._setup()
+    def setup(self, reset=0):
+        self.db.setup(reset)
         zodb_state = self.getConfiguration("zodb")
         if zodb_state:
             logging.warning("Ignoring configuration file for oid mapping."

neo/storage/database/manager.py

@@ -21,7 +21,7 @@ from functools import wraps
 from neo.lib import logging, util
 from neo.lib.exception import DatabaseFailure
 from neo.lib.interfaces import abstract, requires
-from neo.lib.protocol import ZERO_TID
+from neo.lib.protocol import CellStates, NonReadableCell, ZERO_TID
 
 def lazymethod(func):
     def getter(self):
@@ -73,13 +73,9 @@ class DatabaseManager(object):
         self._connect()
 
     def __getattr__(self, attr):
-        if attr == "_getPartition":
-            np = self.getNumPartitions()
-            value = lambda x: x % np
-        elif self._duplicating is None:
+        if self._duplicating is None:
             return self.__getattribute__(attr)
-        else:
-            value = getattr(self._duplicating, attr)
+        value = getattr(self._duplicating, attr)
         setattr(self, attr, value)
         return value
 
@@ -105,19 +101,10 @@ class DatabaseManager(object):
     def _connect(self):
         """Connect to the database"""
 
-    def setup(self, reset=0):
-        """Set up a database, discarding existing data first if reset is True
-        """
-        if reset:
-            self.erase()
-        self._uncommitted_data = defaultdict(int)
-        self._setup()
-
     @abstract
     def erase(self):
         """"""
 
-    @abstract
     def _setup(self):
         """To be overridden by the backend to set up a database
 
@@ -128,6 +115,16 @@ class DatabaseManager(object):
         Keys are data ids and values are number of references.
         """
 
+    @requires(_setup)
+    def setup(self, reset=0):
+        """Set up a database, discarding existing data first if reset is True
+        """
+        if reset:
+            self.erase()
+        self._readable_set = set()
+        self._uncommitted_data = defaultdict(int)
+        self._setup()
+
     @abstract
     def nonempty(self, table):
         """Check whether table is empty or return None if it does not exist"""
@@ -222,7 +219,7 @@ class DatabaseManager(object):
         """
         self.setConfiguration('partitions', num_partitions)
         try:
-            del self._getPartition
+            del self._getPartition, self._getReadablePartition
         except AttributeError:
             pass
 
@@ -295,7 +292,7 @@ class DatabaseManager(object):
             return -1
 
     @abstract
-    def getPartitionTable(self):
+    def getPartitionTable(self, *nid):
         """Return a whole partition table as a sequence of rows. Each row
         is again a tuple of an offset (row ID), the NID of a storage
         node, and a cell state."""
@@ -405,13 +402,47 @@ class DatabaseManager(object):
                 compression, checksum, data,
                 None if data_serial is None else util.p64(data_serial))
 
-    @abstract
-    def changePartitionTable(self, ptid, cell_list, reset=False):
+    @contextmanager
+    def replicated(self, offset):
+        readable_set = self._readable_set
+        assert offset not in readable_set
+        readable_set.add(offset)
+        try:
+            yield
+        finally:
+            readable_set.remove(offset)
+
+    def _changePartitionTable(self, cell_list, reset=False):
         """Change a part of a partition table. The list of cells is
         a tuple of tuples, each of which consists of an offset (row ID),
-        the NID of a storage node, and a cell state. The Partition
-        Table ID must be stored as well. If reset is True, existing data
-        is first thrown away."""
+        the NID of a storage node, and a cell state. If reset is True,
+        existing data is first thrown away.
+        """
+
+    @requires(_changePartitionTable)
+    def changePartitionTable(self, ptid, cell_list, reset=False):
+        readable_set = self._readable_set
+        if reset:
+            readable_set.clear()
+            np = self.getNumPartitions()
+            def _getPartition(x, np=np):
+                return x % np
+            def _getReadablePartition(x, np=np, r=readable_set):
+                x %= np
+                if x in r:
+                    return x
+                raise NonReadableCell
+            self._getPartition = _getPartition
+            self._getReadablePartition = _getReadablePartition
+        me = self.getUUID()
+        for offset, nid, state in cell_list:
+            if nid == me:
+                if CellStates.UP_TO_DATE != state != CellStates.FEEDING:
+                    readable_set.discard(offset)
+                else:
+                    readable_set.add(offset)
+        self._changePartitionTable(cell_list, reset)
+        self.setPTID(ptid)
 
     @abstract
     def dropPartitions(self, offset_list):
@@ -681,12 +712,20 @@ class DatabaseManager(object):
         min_tid and min_oid and below max_tid, for given partition,
         sorted in ascending order."""
 
-    @abstract
-    def getTIDList(self, offset, length, partition_list):
+    def _getTIDList(self, offset, length, partition_list):
         """Return a list of TIDs in ascending order from an offset,
         at most the specified length. The list of partitions are passed
         to filter out non-applicable TIDs."""
 
+    @requires(_getTIDList)
+    def getTIDList(self, offset, length, partition_list):
+        if partition_list:
+            if self._readable_set.issuperset(partition_list):
+                return map(util.p64, self._getTIDList(
+                    offset, length, partition_list))
+            raise NonReadableCell
+        return ()
+
     @abstract
     def getReplicationTIDList(self, min_tid, max_tid, length, partition):
         """Return a list of TIDs in ascending order from an initial tid value,

neo/storage/database/mysqldb.py

@@ -299,7 +299,9 @@ class MySQLDatabaseManager(DatabaseManager):
             q("ALTER TABLE config MODIFY value VARBINARY(%s) NULL" % len(value))
             q(sql)
 
-    def getPartitionTable(self):
+    def getPartitionTable(self, *nid):
+        if nid:
+            return self.query("SELECT rid, state FROM pt WHERE nid=%u" % nid)
         return self.query("SELECT * FROM pt")
 
     def getLastTID(self, max_tid):
@@ -329,7 +331,7 @@ class MySQLDatabaseManager(DatabaseManager):
         # MariaDB is smart enough to realize that 'ttid' is constant.
         r = self.query("SELECT tid FROM trans"
             " WHERE `partition`=%s AND tid>=ttid AND ttid=%s LIMIT 1"
-            % (self._getPartition(ttid), ttid))
+            % (self._getReadablePartition(ttid), ttid))
         if r:
             return util.p64(r[0][0])
 
@@ -338,7 +340,7 @@ class MySQLDatabaseManager(DatabaseManager):
         r = self.query("SELECT tid FROM obj"
                        " WHERE `partition`=%d AND oid=%d"
                        " ORDER BY tid DESC LIMIT 1"
-                       % (self._getPartition(oid), oid))
+                       % (self._getReadablePartition(oid), oid))
         return util.p64(r[0][0]) if r else None
 
     def _getNextTID(self, *args): # partition, oid, tid
@@ -350,7 +352,7 @@ class MySQLDatabaseManager(DatabaseManager):
 
     def _getObject(self, oid, tid=None, before_tid=None):
         q = self.query
-        partition = self._getPartition(oid)
+        partition = self._getReadablePartition(oid)
         sql = ('SELECT tid, compression, data.hash, value, value_tid'
                ' FROM obj LEFT JOIN data ON (obj.data_id = data.id)'
                ' WHERE `partition` = %d AND oid = %d') % (partition, oid)
@@ -373,7 +375,7 @@ class MySQLDatabaseManager(DatabaseManager):
         return (serial, self._getNextTID(partition, oid, serial),
                 compression, checksum, data, value_serial)
 
-    def changePartitionTable(self, ptid, cell_list, reset=False):
+    def _changePartitionTable(self, cell_list, reset=False):
         offset_list = []
         q = self.query
         if reset:
@@ -389,7 +391,6 @@ class MySQLDatabaseManager(DatabaseManager):
                 q("INSERT INTO pt VALUES (%d, %d, %d)"
                   " ON DUPLICATE KEY UPDATE state = %d"
                   % (offset, nid, state, state))
-        self.setPTID(ptid)
         if self._use_partition:
             for offset in offset_list:
                 add = """ALTER TABLE %%s ADD PARTITION (
@@ -572,7 +573,7 @@ class MySQLDatabaseManager(DatabaseManager):
     def _getDataTID(self, oid, tid=None, before_tid=None):
         sql = ('SELECT tid, value_tid FROM obj'
                ' WHERE `partition` = %d AND oid = %d'
-              ) % (self._getPartition(oid), oid)
+              ) % (self._getReadablePartition(oid), oid)
         if tid is not None:
             sql += ' AND tid = %d' % tid
         elif before_tid is not None:
@@ -611,7 +612,6 @@ class MySQLDatabaseManager(DatabaseManager):
 
     def deleteTransaction(self, tid):
         tid = util.u64(tid)
-        getPartition = self._getPartition
         self.query("DELETE FROM trans WHERE `partition`=%s AND tid=%s" %
             (self._getPartition(tid), tid))
 
@@ -645,7 +645,7 @@ class MySQLDatabaseManager(DatabaseManager):
         q = self.query
         r = q("SELECT oids, user, description, ext, packed, ttid"
               " FROM trans WHERE `partition` = %d AND tid = %d"
-              % (self._getPartition(tid), tid))
+              % (self._getReadablePartition(tid), tid))
         if not r and all:
             r = q("SELECT oids, user, description, ext, packed, ttid"
                   " FROM ttrans WHERE tid = %d" % tid)
@@ -665,7 +665,8 @@ class MySQLDatabaseManager(DatabaseManager):
             " FROM obj LEFT JOIN data ON (obj.data_id = data.id)"
             " WHERE `partition` = %d AND oid = %d AND tid >= %d"
             " ORDER BY tid DESC LIMIT %d, %d" %
-            (self._getPartition(oid), oid, self._getPackTID(), offset, length))
+            (self._getReadablePartition(oid), oid,
+             self._getPackTID(), offset, length))
         if r:
             return [(p64(tid), length or 0) for tid, length in r]
 
@@ -681,12 +682,11 @@ class MySQLDatabaseManager(DatabaseManager):
             partition, u64(max_tid), min_tid, u64(min_oid), min_tid, length))
         return [(p64(serial), p64(oid)) for serial, oid in r]
 
-    def getTIDList(self, offset, length, partition_list):
-        q = self.query
-        r = q("""SELECT tid FROM trans WHERE `partition` in (%s)
-                    ORDER BY tid DESC LIMIT %d,%d""" \
-                % (','.join(map(str, partition_list)), offset, length))
-        return [util.p64(t[0]) for t in r]
+    def _getTIDList(self, offset, length, partition_list):
+        return (t[0] for t in self.query(
+            "SELECT tid FROM trans WHERE `partition` in (%s)"
+            " ORDER BY tid DESC LIMIT %d,%d"
+            % (','.join(map(str, partition_list)), offset, length)))
 
     def getReplicationTIDList(self, min_tid, max_tid, length, partition):
         u64 = util.u64
@@ -712,7 +712,7 @@ class MySQLDatabaseManager(DatabaseManager):
         # reference is just updated to point to the new data location.
         value_serial = None
         kw = {
-          'partition': self._getPartition(oid),
+          'partition': self._getReadablePartition(oid),
           'oid': oid,
           'orig_tid': orig_serial,
           'max_tid': max_serial,
@@ -736,7 +736,7 @@ class MySQLDatabaseManager(DatabaseManager):
         p64 = util.p64
         tid = util.u64(tid)
         updatePackFuture = self._updatePackFuture
-        getPartition = self._getPartition
+        getPartition = self._getReadablePartition
         q = self.query
         self._setPackTID(tid)
         for count, oid, max_serial in q("SELECT COUNT(*) - 1, oid, MAX(tid)"

neo/storage/database/sqlite.py

@@ -219,7 +219,9 @@ class SQLiteDatabaseManager(DatabaseManager):
         else:
             q("REPLACE INTO config VALUES (?,?)", (key, str(value)))
 
-    def getPartitionTable(self):
+    def getPartitionTable(self, *nid):
+        if nid:
+            return self.query("SELECT rid, state FROM pt WHERE nid=?", nid)
         return self.query("SELECT * FROM pt")
 
     # A test with a table of 20 million lines and SQLite 3.8.7.1 shows that
@@ -260,7 +262,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         # even though ttid is a constant.
         for tid, in self.query("SELECT tid FROM trans"
                 " WHERE partition=? AND tid>=? AND ttid=? LIMIT 1",
-                (self._getPartition(ttid), ttid, ttid)):
+                (self._getReadablePartition(ttid), ttid, ttid)):
             return util.p64(tid)
 
     def getLastObjectTID(self, oid):
@@ -268,7 +270,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         r = self.query("SELECT tid FROM obj"
                        " WHERE partition=? AND oid=?"
                        " ORDER BY tid DESC LIMIT 1",
-                       (self._getPartition(oid), oid)).fetchone()
+                       (self._getReadablePartition(oid), oid)).fetchone()
         return r and util.p64(r[0])
 
     def _getNextTID(self, *args): # partition, oid, tid
@@ -279,7 +281,7 @@ class SQLiteDatabaseManager(DatabaseManager):
 
     def _getObject(self, oid, tid=None, before_tid=None):
         q = self.query
-        partition = self._getPartition(oid)
+        partition = self._getReadablePartition(oid)
         sql = ('SELECT tid, compression, data.hash, value, value_tid'
                ' FROM obj LEFT JOIN data ON obj.data_id = data.id'
                ' WHERE partition=? AND oid=?')
@@ -300,7 +302,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         return (serial, self._getNextTID(partition, oid, serial),
                 compression, checksum, data, value_serial)
 
-    def changePartitionTable(self, ptid, cell_list, reset=False):
+    def _changePartitionTable(self, cell_list, reset=False):
         q = self.query
         if reset:
             q("DELETE FROM pt")
@@ -315,7 +317,6 @@ class SQLiteDatabaseManager(DatabaseManager):
             if state != CellStates.DISCARDED:
                 q("INSERT OR FAIL INTO pt VALUES (?,?,?)",
                   (offset, nid, int(state)))
-        self.setPTID(ptid)
 
     def dropPartitions(self, offset_list):
         where = " WHERE partition=?"
@@ -409,7 +410,7 @@ class SQLiteDatabaseManager(DatabaseManager):
                           " FROM data where id=?", (data_id,)).fetchone()
 
     def _getDataTID(self, oid, tid=None, before_tid=None):
-        partition = self._getPartition(oid)
+        partition = self._getReadablePartition(oid)
         sql = 'SELECT tid, value_tid FROM obj' \
               ' WHERE partition=? AND oid=?'
         if tid is not None:
@@ -451,7 +452,6 @@ class SQLiteDatabaseManager(DatabaseManager):
 
     def deleteTransaction(self, tid):
         tid = util.u64(tid)
-        getPartition = self._getPartition
         self.query("DELETE FROM trans WHERE partition=? AND tid=?",
             (self._getPartition(tid), tid))
 
@@ -490,7 +490,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         q = self.query
         r = q("SELECT oids, user, description, ext, packed, ttid"
               " FROM trans WHERE partition=? AND tid=?",
-              (self._getPartition(tid), tid)).fetchone()
+              (self._getReadablePartition(tid), tid)).fetchone()
         if not r and all:
             r = q("SELECT oids, user, description, ext, packed, ttid"
                   " FROM ttrans WHERE tid=?", (tid,)).fetchone()
@@ -510,7 +510,8 @@ class SQLiteDatabaseManager(DatabaseManager):
                 FROM obj LEFT JOIN data ON obj.data_id = data.id
                 WHERE partition=? AND oid=? AND tid>=?
                 ORDER BY tid DESC LIMIT ?,?""",
-            (self._getPartition(oid), oid, self._getPackTID(), offset, length))
+            (self._getReadablePartition(oid), oid,
+             self._getPackTID(), offset, length))
             ] or None
 
     def getReplicationObjectList(self, min_tid, max_tid, length, partition,
@@ -525,12 +526,11 @@ class SQLiteDatabaseManager(DatabaseManager):
             ORDER BY tid ASC, oid ASC LIMIT ?""",
             (partition, u64(max_tid), min_tid, u64(min_oid), min_tid, length))]
 
-    def getTIDList(self, offset, length, partition_list):
-        p64 = util.p64
-        return [p64(t[0]) for t in self.query("""\
-            SELECT tid FROM trans WHERE partition in (%s)
-            ORDER BY tid DESC LIMIT %d,%d"""
-            % (','.join(map(str, partition_list)), offset, length))]
+    def _getTIDList(self, offset, length, partition_list):
+        return (t[0] for t in self.query(
+            "SELECT tid FROM trans WHERE `partition` in (%s)"
+            " ORDER BY tid DESC LIMIT %d,%d"
+            % (','.join(map(str, partition_list)), offset, length)))
 
     def getReplicationTIDList(self, min_tid, max_tid, length, partition):
         u64 = util.u64
@@ -548,7 +548,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         # transaction referencing its value at max_serial or above.
         # If there is, copy value to the first future transaction. Any further
         # reference is just updated to point to the new data location.
-        partition = self._getPartition(oid)
+        partition = self._getReadablePartition(oid)
         value_serial = None
         q = self.query
         for T in '', 't':
@@ -569,7 +569,7 @@ class SQLiteDatabaseManager(DatabaseManager):
         p64 = util.p64
         tid = util.u64(tid)
         updatePackFuture = self._updatePackFuture
-        getPartition = self._getPartition
+        getPartition = self._getReadablePartition
         q = self.query
         self._setPackTID(tid)
         for count, oid, max_serial in q("SELECT COUNT(*) - 1, oid, MAX(tid)"

neo/storage/replicator.py

@@ -175,6 +175,7 @@ class Replicator(object):
                         # self.replicate_dict[offset], but p.max_ttid is not
                         # wrong. Anyway here, we're not in backup mode and this
                         # value will be ignored.
+                        # XXX: see NonReadableCell.__doc__
                         self.app.tm.replicated(offset, p.max_ttid)
                     p.max_ttid = None
         self._nextPartition()

neo/storage/transactions.py

@@ -18,7 +18,8 @@ from time import time
 from neo.lib import logging
 from neo.lib.handler import DelayEvent, EventQueue
 from neo.lib.util import dump
-from neo.lib.protocol import Packets, ProtocolError, uuid_str, MAX_TID
+from neo.lib.protocol import Packets, ProtocolError, NonReadableCell, \
+    uuid_str, MAX_TID
 
 class ConflictError(Exception):
     """
@@ -107,8 +108,8 @@ class TransactionManager(EventQueue):
         assert isdisjoint(self._replicated), (offset_list, self._replicated)
         assert isdisjoint(map(self.getPartition, self._store_lock_dict)), (
             offset_list, self._store_lock_dict)
-        self._app.master_conn.ask(Packets.AskUnfinishedTransactions(),
-                                  offset_list=offset_list)
+        p = Packets.AskUnfinishedTransactions(offset_list)
+        self._app.master_conn.ask(p, offset_list=offset_list)
 
     def replicated(self, partition, tid):
         # also called for readable cells in BACKINGUP state
@@ -387,7 +388,14 @@ class TransactionManager(EventQueue):
             # Deadlock avoidance. Still no new locking_tid from the client.
             raise DelayEvent(transaction)
         else:
-            previous_serial = self._app.dm.getLastObjectTID(oid)
+            try:
+                previous_serial = self._app.dm.getLastObjectTID(oid)
+            except NonReadableCell:
+                partition = self.getPartition(oid)
+                if partition not in self._replicated:
+                    raise
+                with self._app.dm.replicated(partition):
+                    previous_serial = self._app.dm.getLastObjectTID(oid)
         # Locking before reporting a conflict would speed up the case of
         # cascading conflict resolution by avoiding incremental resolution,
         # assuming that the time to resolve a conflict is often constant:

neo/tests/client/testClientApp.py

@@ -16,58 +16,27 @@
 
 import unittest
 from ..mock import Mock
-from ZODB.POSException import StorageTransactionError, ConflictError
+from ZODB.POSException import StorageTransactionError
 from .. import NeoUnitTestBase, buildUrlFromString
 from neo.client.app import Application
 from neo.client.cache import test as testCache
-from neo.client.exception import NEOStorageError, NEOStorageNotFoundError
-from neo.lib.protocol import NodeTypes, Packets, Errors, UUID_NAMESPACES
-from neo.lib.util import makeChecksum
-
-def _getMasterConnection(self):
-    if self.master_conn is None:
-        self.last_tid = None
-        self.uuid = 1 + (UUID_NAMESPACES[NodeTypes.CLIENT] << 24)
-        self.num_partitions = 10
-        self.num_replicas = 1
-        self.pt = Mock({'getCellList': ()})
-        self.master_conn = Mock()
-    return self.master_conn
-
-def _ask(self, conn, packet, handler=None, **kw):
-    self.setHandlerData(None)
-    conn.ask(packet, **kw)
-    if handler is None:
-        raise NotImplementedError
-    else:
-        handler.dispatch(conn, conn.fakeReceived())
-    return self.getHandlerData()
+from neo.client.exception import NEOStorageError
+from neo.lib.protocol import NodeTypes, UUID_NAMESPACES
 
 class ClientApplicationTests(NeoUnitTestBase):
 
     def setUp(self):
         NeoUnitTestBase.setUp(self)
-        # apply monkey patches
-        self._getMasterConnection = Application._getMasterConnection
-        self._ask = Application._ask
-        Application._getMasterConnection = _getMasterConnection
-        Application._ask = _ask
         self._to_stop_list = []
 
     def _tearDown(self, success):
         # stop threads
         for app in self._to_stop_list:
             app.close()
-        # restore environment
-        Application._ask = self._ask
-        Application._getMasterConnection = self._getMasterConnection
         NeoUnitTestBase._tearDown(self, success)
 
     # some helpers
 
-    def checkAskObject(self, conn):
-        return self.checkAskPacket(conn, Packets.AskObject)
-
     def _begin(self, app, txn, tid):
         txn_context = app._txn_container.new(txn)
         txn_context.ttid = tid
@@ -101,61 +70,6 @@ class ClientApplicationTests(NeoUnitTestBase):
 
     testCache = testCache
 
-    def test_load(self):
-        app = self.getApp()
-        cache = app._cache
-        oid = self.makeOID()
-        tid1 = self.makeTID(1)
-        tid2 = self.makeTID(2)
-        tid3 = self.makeTID(3)
-        tid4 = self.makeTID(4)
-        # connection to SN close
-        self.assertFalse(oid in cache._oid_dict)
-        conn = Mock({'getAddress': ('', 0)})
-        app.cp = Mock({'iterateForObject': (conn,)})
-        def fakeReceived(packet):
-            packet.setId(0)
-            conn.fakeReceived = iter((packet,)).next
-        def fakeObject(oid, serial, next_serial, data):
-            fakeReceived(Packets.AnswerObject(oid, serial, next_serial, 0,
-                                              makeChecksum(data), data, None))
-            return data, serial, next_serial
-
-        fakeReceived(Errors.OidNotFound(''))
-        #Application._waitMessage = self._waitMessage
-        # XXX: test disabled because of an infinite loop
-        # self.assertRaises(NEOStorageError, app.load, oid, None, tid2)
-        # self.checkAskObject(conn)
-        #Application._waitMessage = _waitMessage
-        # object not found in NEO -> NEOStorageNotFoundError
-        self.assertFalse(oid in cache._oid_dict)
-
-        fakeReceived(Errors.OidNotFound(''))
-        self.assertRaises(NEOStorageNotFoundError, app.load, oid)
-        self.checkAskObject(conn)
-
-        r1 = fakeObject(oid, tid1, tid3, 'FOO')
-        self.assertEqual(r1, app.load(oid, None, tid2))
-        self.checkAskObject(conn)
-        for t in tid2, tid3:
-            self.assertEqual(cache._load(oid, t).tid, tid1)
-        self.assertEqual(r1, app.load(oid, tid1))
-        self.assertEqual(r1, app.load(oid, None, tid3))
-        self.assertRaises(StandardError, app.load, oid, tid2)
-        self.assertRaises(StopIteration, app.load, oid)
-        self.checkAskObject(conn)
-
-        r2 = fakeObject(oid, tid3, None, 'BAR')
-        self.assertEqual(r2, app.load(oid, None, tid4))
-        self.checkAskObject(conn)
-        self.assertEqual(r2, app.load(oid))
-        self.assertEqual(r2, app.load(oid, tid3))
-
-        cache.invalidate(oid, tid4)
-        self.assertRaises(StopIteration, app.load, oid)
-        self.checkAskObject(conn)
-        self.assertEqual(len(cache._oid_dict[oid]), 2)
-
     def test_store1(self):
         app = self.getApp()
         oid = self.makeOID(11)

neo/tests/client/testConnectionPool.py

@@ -19,9 +19,7 @@ from ..mock import Mock
 
 from .. import NeoUnitTestBase
 from neo.client.app import ConnectionPool
-from neo.client.exception import NEOStorageError
 from neo.client import pool
-from neo.lib.util import p64
 
 class ConnectionPoolTests(NeoUnitTestBase):
 
@@ -53,14 +51,6 @@ class ConnectionPoolTests(NeoUnitTestBase):
         self.assertEqual(getCellSortKey(node_uuid_2, 10), getCellSortKey(
             node_uuid_3, 10))
 
-    def test_iterateForObject_noStorageAvailable(self):
-        # no node available
-        oid = p64(1)
-        app = Mock()
-        app.pt = Mock({'getCellList': []})
-        pool = ConnectionPool(app)
-        self.assertRaises(NEOStorageError, pool.iterateForObject(oid).next)
-
 if __name__ == '__main__':
     unittest.main()
 

neo/tests/master/testMasterPT.py

@@ -212,6 +212,9 @@ class MasterPartitionTableTests(NeoUnitTestBase):
         self.assertEqual(self._pt_states(pt), self._pt_states(new_pt))
 
     def update(self, pt, change_list=None):
+        offset_list = range(pt.np)
+        for node in pt.count_dict:
+            pt.updatable(node.getUUID(), offset_list)
         if change_list is None:
             for offset, row in enumerate(pt.partition_list):
                 for cell in list(row):

neo/tests/storage/testStorageMySQL.py

@@ -105,7 +105,7 @@ class StorageMySQLdbTests(StorageDBTests):
         self.db.query(x)
         # Reconnection cleared the cache of the config table,
         # so fill it again with required values before we patch query().
-        self.db.getNumPartitions()
+        self.db._getPartition
         # Check MySQLDatabaseManager._max_allowed_packet
         query_list = []
         self.db.query = lambda query: query_list.append(EXTRA + len(query))

neo/tests/threaded/test.py

@@ -1382,7 +1382,7 @@ class Test(NEOThreadedTest):
             s2c.append(self)
             ll()
         def connectToStorage(client):
-            next(client.cp.iterateForObject(0))
+            client._askStorageForRead(0, None, lambda *_: None)
         if 1:
             Ca = cluster.client
             Ca.pt      # only connect to the master

neo/tests/threaded/testReplication.py

@@ -410,12 +410,9 @@ class ReplicationTests(NEOThreadedTest):
 
     @with_cluster(start_cluster=0, partitions=2, storage_count=2)
     def testClientReadingDuringTweak(self, cluster):
-        # XXX: Currently, the test passes because data of dropped cells are not
-        #      deleted while the cluster is operational: this is only done
-        #      during the RECOVERING phase. But we'll want to be able to free
-        #      disk space without service interruption, and for this the client
-        #      may have to retry reading data from the new cells. If s0 deleted
-        #      all data for partition 1, the test would fail with a POSKeyError.
+        def sync(orig):
+            m2c.remove(delay)
+            orig()
         s0, s1 = cluster.storage_list
         if 1:
             cluster.start([s0])
@@ -431,9 +428,11 @@ class ReplicationTests(NEOThreadedTest):
             cluster.neoctl.enableStorageList([s1.uuid])
             cluster.neoctl.tweakPartitionTable()
             with cluster.master.filterConnection(cluster.client) as m2c:
-                m2c.delayNotifyPartitionChanges()
+                delay = m2c.delayNotifyPartitionChanges()
                 self.tic()
-                self.assertEqual('foo', storage.load(oid)[0])
+                with Patch(cluster.client, sync=sync):
+                    self.assertEqual('foo', storage.load(oid)[0])
+                self.assertNotIn(delay, m2c)
 
     @with_cluster(start_cluster=False, storage_count=3, partitions=3)
     def testAbortingReplication(self, cluster):