Commit b7b73a33 authored by Thomas Gambier's avatar Thomas Gambier 🚴🏼

software/jupyter: move to python 3

See merge request !868
parents 6acab77d b15cac5f
This diff is collapsed.
This directory is only temporary (until ERP5 is Python3) and will not actively
be maintained.
It has to be removed once ERP5 uses `software/jupyter` or do not use jupyter at
all.
[buildout]
extends =
buildout.hash.cfg
../../stack/slapos.cfg
../openssl/buildout.cfg
../jupyter/buildout.cfg
../../stack/monitor/buildout.cfg
parts +=
slapos-cookbook
jupyter
jupyter-notebook-initialized-scripts
instance-jupyter-notebook
[gcc]
# Always build GCC for Fortran (see openblas).
max_version = 0
[jupyter]
python_executable = ${buildout:bin-directory}/${:interpreter}
[download-file-base]
recipe = slapos.recipe.build:download
url = ${:_profile_base_location_}/${:filename}
download-only = true
mode = 0644
[jupyter-notebook-config]
<= download-file-base
[jupyter-set-password]
<= download-file-base
[erp5-kernel]
<= download-file-base
[kernel-json]
<= download-file-base
[custom-js]
<= download-file-base
[instance-jupyter-notebook]
recipe = slapos.recipe.template:jinja2
template = ${:_profile_base_location_}/${:filename}
rendered = ${buildout:directory}/template.cfg
mode = 0644
context =
key bin_directory buildout:bin-directory
key develop_eggs_directory buildout:develop-eggs-directory
key eggs_directory buildout:eggs-directory
key openssl_output openssl-output:openssl
key python_executable jupyter:python_executable
key jupyter_config_location jupyter-notebook-config:location
key jupyter_config_filename jupyter-notebook-config:filename
key jupyter_set_password_location jupyter-set-password:location
key jupyter_set_password_filename jupyter-set-password:filename
key erp5_kernel_location erp5-kernel:location
key erp5_kernel_filename erp5-kernel:filename
key kernel_json_location kernel-json:location
key kernel_json_filename kernel-json:filename
key custom_js_location custom-js:location
key custom_js_filename custom-js:filename
key monitor_template_rendered buildout:directory
[versions]
Pygments = 2.2.0
astor = 0.5
backports-abc = 0.5
backports.functools-lru-cache = 1.6.1
backports.shutil-get-terminal-size = 1.0.0
cycler = 0.10.0
ipykernel = 4.5.2
ipython = 5.3.0
ipython-genutils = 0.1.0
ipywidgets = 6.0.0
jupyter-client = 5.0.0
jupyter-core = 4.3.0
jupyterlab = 0.26.3
jupyterlab-launcher = 0.3.1
matplotlib = 2.1.2
mistune = 0.7.3
nbformat = 4.3.0
notebook = 4.4.1
pandas = 0.19.2
plone.recipe.command = 1.1
prompt-toolkit = 1.0.13
ptyprocess = 0.5.1
pyzmq = 16.0.2
scikit-learn = 0.18.1
seaborn = 0.7.1
simplegeneric = 0.8.1
slapos.recipe.template = 4.4
statsmodels = 0.8.0
terminado = 0.6
tornado = 4.4.2
traitlets = 4.3.2
widgetsnbextension = 2.0.0
# numpy >= 1.13.1 is required for numpy.core.multiarray
numpy = 1.13.1
# Required by:
# tornado==4.4.2
certifi = 2020.6.20
# Required by:
# notebook==4.3.2
# nbconvert 4.2.0 depends on entrypoints egg that is not available as tar/zip source.
nbconvert = 4.1.0
# Required by:
# ipython==5.3.0
pathlib2 = 2.2.1
# Required by:
# statsmodels==0.8.0
patsy = 0.4.1
# Required by:
# ipython==5.3.0
pexpect = 4.2.1
# Required by:
# ipython==5.3.0
pickleshare = 0.7.4
# Required by:
# matplotlib==2.1.2
# pandas==0.19.2
python-dateutil = 2.6.0
# Required by:
# pathlib2==2.2.1
scandir = 1.5
# Required by:
# statsmodels==0.8.0
scipy = 0.19.0
# Required by:
# tornado==4.4.2
singledispatch = 3.4.0.3
# Required by:
# prompt-toolkit==1.0.13
wcwidth = 0.1.7
jupyter = 1.0.0
jupyter-console = 5.1.0
# Required by:
# jupyter==1.0.0
qtconsole = 4.3.0
et-xmlfile = 1.0.1
h5py = 2.7.1
mpmath = 1.0.0
openpyxl = 2.5.2
sympy = 1.1.1
xlrd = 1.1.0
# Required by:
# openpyxl==2.5.2
jdcal = 1.4
# THIS IS NOT A BUILDOUT FILE, despite purposedly using a compatible syntax.
# The only allowed lines here are (regexes):
# - "^#" comments, copied verbatim
# - "^[" section beginings, copied verbatim
# - lines containing an "=" sign which must fit in the following categorie.
# - "^\s*filename\s*=\s*path\s*$" where "path" is relative to this file
# Copied verbatim.
# - "^\s*hashtype\s*=.*" where "hashtype" is one of the values supported
# by the re-generation script.
# Re-generated.
# - other lines are copied verbatim
# Substitution (${...:...}), extension ([buildout] extends = ...) and
# section inheritance (< = ...) are NOT supported (but you should really
# not need these here).
[instance-jupyter-notebook]
filename = instance.cfg.in
md5sum = 1d5fe6cc4e48672ae7be1c223794a932
[jupyter-notebook-config]
filename = jupyter_notebook_config.py.jinja
md5sum = 720e90a829c63371696bc3009917a743
[jupyter-set-password]
filename = jupyter_set_password.cgi.jinja
md5sum = ac10fbcf790bd8e58750cfdd069812d2
[erp5-kernel]
filename = ERP5kernel.py
md5sum = 7d5309fe79afbcb455c0d8181b42e56c
[kernel-json]
filename = kernel.json.jinja
md5sum = 33547be93a67530165e079dc3ecfdac3
[custom-js]
filename = custom.js
md5sum = 147ccce38f7d7cf10664975d0dd80e33
// leave at least 2 line with only a star on it below, or doc generation fails
/**
*
*
* Placeholder for custom user javascript
* mainly to be overridden in profile/static/custom/custom.js
* This will always be an empty file in IPython
*
* User could add any javascript in the `profile/static/custom/custom.js` file.
* It will be executed by the ipython notebook at load time.
*
* Same thing with `profile/static/custom/custom.css` to inject custom css into the notebook.
*
*
* The object available at load time depend on the version of IPython in use.
* there is no guaranties of API stability.
*
* The example below explain the principle, and might not be valid.
*
* Instances are created after the loading of this file and might need to be accessed using events:
* define([
* 'base/js/namespace',
* 'base/js/events'
* ], function(IPython, events) {
* events.on("app_initialized.NotebookApp", function () {
* IPython.keyboard_manager....
* });
* });
*
* __Example 1:__
*
* Create a custom button in toolbar that execute `%qtconsole` in kernel
* and hence open a qtconsole attached to the same kernel as the current notebook
*
* define([
* 'base/js/namespace',
* 'base/js/events'
* ], function(IPython, events) {
* events.on('app_initialized.NotebookApp', function(){
* IPython.toolbar.add_buttons_group([
* {
* 'label' : 'run qtconsole',
* 'icon' : 'icon-terminal', // select your icon from http://fortawesome.github.io/Font-Awesome/icons
* 'callback': function () {
* IPython.notebook.kernel.execute('%qtconsole')
* }
* }
* // add more button here if needed.
* ]);
* });
* });
*
* __Example 2:__
*
* At the completion of the dashboard loading, load an unofficial javascript extension
* that is installed in profile/static/custom/
*
* define([
* 'base/js/events'
* ], function(events) {
* events.on('app_initialized.DashboardApp', function(){
* require(['custom/unofficial_extension.js'])
* });
* });
*
* __Example 3:__
*
* Use `jQuery.getScript(url [, success(script, textStatus, jqXHR)] );`
* to load custom script into the notebook.
*
* // to load the metadata ui extension example.
* $.getScript('/static/notebook/js/celltoolbarpresets/example.js');
* // or
* // to load the metadata ui extension to control slideshow mode / reveal js for nbconvert
* $.getScript('/static/notebook/js/celltoolbarpresets/slideshow.js');
*
*
* @module IPython
* @namespace IPython
* @class customjs
* @static
*/
$([Jupyter.events]).on('notebook_loaded.Notebook', function(){
var kernelname = Jupyter.notebook.kernel_selector.current_selection;
var display_text="<div class='output_subarea output_text output_result'>\
<pre>Follow these steps to customize your notebook with ERP5 kernel :-</br>\
1. Make sure you have 'erp5_data_notebook' business template installed in your ERP5</br>\
2. <b>%erp5_user &lt;your_erp5_username&gt;</b></br>\
3. <b>%erp5_password &lt;your_erp5_password&gt;</b></br>\
4. <b>%notebook_set_reference &lt;your_notebook_reference&gt;</b></br>\
It would be better to set the reference to match with erp5 reference pattern.</br>\
5. As soon as you see 'Please Proceed' message you can now access your erp5 using notebook.</br>\
<p><u>OTHER USEFUL MAGICS</u> -</br>\
<b>%my_notebooks</b> -This is used to display all the notebooks created by the specific user.</br>\
<b>%notebook_set_title</b> -This sets the title of the current notebook.</br>\
NOTE: Do not dynamically alter imported module objects as they are not being saved in DB, </br>\
so changes to them would be disregarded and would throw an error.</br>\
<p><u>About classes, functions and global state on modules:</u></p>\
Your code is going to be executed by ERP5, which can have many nodes </br>\
and there is no guarantee that your code is always going to be executed by the same server.</br>\
This means that objects which cannot be stored in the ZODB, like functions, classes and modules </br>\
won't be available across nodes. To solve this issue, you need to use a special object </br>\
called 'environment' to store your global setup. This object was designed to hold global </br>\
state and restore it for each code cell. Example:</br></br>\
<b>def my_setup():</br>\
# import modules, define functions and classes</br>\
# and set global state on modules</br>\
# return dict of variables to be available in code cells</br>\
{'my_var': 1}</br>\
environment.define(my_setup, 'my custom setup')</b></br></br>\
After you execute this cell, the <b>my_setup</b> function will run before each of the</br>\
following cells and the <b>my_var</b> variable will be created and set to 1.</br></br>\
<b>WARNING:</b> it is not recommended to have too many setup functions in the environment, </br>\
because they will be executed in every code cell and can cause a substantial slow down.\
</pre></div>";
if (kernelname=="erp5"){
$('div#notebook-container').prepend(display_text);
}
});
[buildout]
parts =
instance
jupyter_notebook
read-knowledge0
publish-connection-parameter
jupyter-notebook-config
erp5-kernel
kernel-json
custom-js
monitor-base
extends =
{{ monitor_template_rendered }}/template-monitor.cfg
eggs-directory = {{ eggs_directory }}
develop-eggs-directory = {{ develop_eggs_directory }}
offline = true
[slapconfiguration]
recipe = slapos.cookbook:slapconfiguration.serialised
computer = ${slap-connection:computer-id}
partition = ${slap-connection:partition-id}
url = ${slap-connection:server-url}
key = ${slap-connection:key-file}
cert = ${slap-connection:cert-file}
# ERP5 URL to use in Jupyter by default
# default value is empty - which means no default ERP5 URL
configuration.erp5-url =
[instance-parameter]
port = 8888
host = ${slapconfiguration:ipv6-random}
cert_file = ${generate-certificate:cert_file}
key_file = ${generate-certificate:key_file}
logfile = ${directory:log}/jupyter_notebook.log
notebook_dir = ${directory:notebook_dir}
[dynamic-jinja2-template-base]
recipe = slapos.recipe.template:jinja2
mode = 0644
[generate-certificate]
; TODO: there is a slapos recipe to generate certificates. Use it instead
recipe = plone.recipe.command
command =
if [ ! -e ${instance-parameter:key_file} ]
then
{{ openssl_output }} req -x509 -nodes -days 3650 \
-subj "/C=AA/ST=X/L=X/O=Dis/CN=${instance-parameter:host}" \
-newkey rsa:1024 -keyout ${instance-parameter:key_file} \
-out ${instance-parameter:cert_file}
fi
update-command = ${:command}
cert_file = ${directory:etc}/jupyter_cert.crt
key_file = ${directory:etc}/jupyter_cert.key
[instance]
recipe = slapos.cookbook:wrapper
command-line =
{{ bin_directory }}/jupyter-lab
--no-browser
--ip=${instance-parameter:host}
--port=${instance-parameter:port}
--port-retries=0
--certfile=${instance-parameter:cert_file}
--keyfile=${instance-parameter:key_file}
--notebook-dir=${instance-parameter:notebook_dir}
--log-level="DEBUG"
wrapper-path = ${directory:service}/jupyter-lab
environment =
JUPYTER_PATH=${directory:jupyter_dir}
JUPYTER_CONFIG_DIR=${directory:jupyter_config_dir}
JUPYTER_RUNTIME_DIR=${directory:jupyter_runtime_dir}
LANG=C.UTF-8
[jupyter-notebook-config]
<= dynamic-jinja2-template-base
template = {{ jupyter_config_location }}/{{ jupyter_config_filename }}
rendered = ${directory:jupyter_config_dir}/jupyter_notebook_config.py
mode = 0744
context =
raw config_cfg ${buildout:directory}/knowledge0.cfg
[directory]
recipe = slapos.cookbook:mkdirectory
home = ${buildout:directory}
etc = ${:home}/etc
var = ${:home}/var
script = ${:etc}/run/
service = ${:etc}/service
log = ${:var}/log
notebook_dir = ${:var}/notebooks
# Add folders to explicitly define jupyter directory
jupyter_dir = ${:home}/jupyter
jupyter_config_dir = ${:jupyter_dir}/etc
jupyter_kernel_dir = ${:jupyter_dir}/kernels
jupyter_runtime_dir = ${:jupyter_dir}/runtime
jupyter_custom_dir = ${:jupyter_config_dir}/custom
jupyter_nbextensions_dir = ${:jupyter_dir}/nbextensions
erp5_kernel_dir = ${:jupyter_kernel_dir}/ERP5
[jupyter_notebook]
# This part is called like this because knowledge0.write uses the part name for
# the section name in the config file.
recipe = slapos.cookbook:zero-knowledge.write
password =
filename = knowledge0.cfg
[read-knowledge0]
recipe = slapos.cookbook:zero-knowledge.read
filename = knowledge0.cfg
password =
[monitor-instance-parameter]
monitor-base-url = ${monitor-frontend-promise:url}
# In case you're using a developer instance you should edit these in:
# monitor-base-url = ${monitor-httpd-conf-parameter:url}
# cors-domains = softinstXXXXX.host.vifib.net (or equivalent)
# interface-url = https://softinstXXXXX.host.vifib.net/erp5/web_site_module/monitoring_rjs_unsafe
instance-configuration =
raw jupyter-password ${read-knowledge0:password}
[publish-connection-parameter]
recipe = slapos.cookbook:publish.serialised
jupyter-classic-url = https://[${instance-parameter:host}]:${instance-parameter:port}/tree
url = ${:jupyter-classic-url}
jupyterlab-url = https://[${instance-parameter:host}]:${instance-parameter:port}/lab
[erp5-kernel]
recipe = slapos.cookbook:symbolic.link
link-binary = {{ erp5_kernel_location }}/{{ erp5_kernel_filename }}
target-directory = ${directory:erp5_kernel_dir}
[kernel-json]
<= dynamic-jinja2-template-base
template = {{ kernel_json_location }}/{{ kernel_json_filename }}
rendered = ${directory:erp5_kernel_dir}/kernel.json
# Use python2.7 executable bin file for kernel config
context =
raw python_executable {{ python_executable }}
raw kernel_dir ${erp5-kernel:target-directory}/{{ erp5_kernel_filename }}
key erp5_url slapconfiguration:configuration.erp5-url
raw display_name ERP5
raw language_name python
[custom-js]
recipe = slapos.cookbook:symbolic.link
target-directory = ${directory:jupyter_custom_dir}
link-binary = {{ custom_js_location }}/custom.js
'''
This script initializes Jupyter's configuration such as passwords and other
things. It is run by IPython hence why it can use functions like get_config().
'''
import ConfigParser
import random
from notebook.auth import passwd
import os
def random_password(length = 10):
result = ""
for i in range(0, length):
result = result + chr(random.randint(0, 25) + ord('a'))
return result
knowledge_0 = '{{ config_cfg }}'
if not os.path.exists(knowledge_0):
print "Your software does <b>not</b> embed 0-knowledge. \
This interface is useless in this case</body></html>"
exit(0)
c = get_config()
parser = ConfigParser.ConfigParser()
parser.read(knowledge_0)
if not parser.has_section("jupyter_notebook"):
parser.add_section("jupyter_notebook")
if not parser.has_option("jupyter_notebook", "password") or \
parser.get("jupyter_notebook", "password") == "":
parser.set("jupyter_notebook", "password", random_password())
c.NotebookApp.password = passwd(parser.get("jupyter_notebook", "password"))
with open(knowledge_0, 'w') as file:
parser.write(file)
#!{{ python_executable }}
import cgi
import cgitb
import ConfigParser
import os
import re
import subprocess
from IPython.lib import passwd
#cgitb.enable(display=0, logdir="/tmp/cgi.log")
cgitb.enable()
form = cgi.FieldStorage()
config_file = "{{ config_cfg }}"
if not os.path.exists(config_file):
print "Your software does <b>not</b> embed 0-knowledge. \
This interface is useless in this case</body></html>"
exit(0)
parser = ConfigParser.ConfigParser()
parser.read(config_file)
if not parser.has_section("jupyter_notebook"):
parser.add_section("jupyter_notebook")
if not parser.has_option("jupyter_notebook", "password"):
parser.set("jupyter_notebook", "password", "")
if "password" in form:
parser.set("jupyter_notebook", "password", passwd(form["password"].value))
# subprocess.call('{{ httpd_graceful }}')
# TODO: we should restart jupyter
with open(config_file, 'w') as file:
parser.write(file)
# TODO cleanup
print "<html><head>"
print "<link rel=\"stylesheet\" href=\"static/pure-min.css\">"
print "<link rel=\"stylesheet\" href=\"static/style.css\">"
print "</head><body>"
print "<h1>Jupyter Notebook Password :</h1>"
print "<form action=\"/index.cgi\" method=\"post\" class=\"pure-form-aligned\">"
print "<input type=\"hidden\" name=\"posting-script\" value=\"{{ pwd }}/{{ this_file }}\">"
print """<div class="pure-control-group">
<label for="password">Password*:</label>
<input placeholder="Set your password" type="password" name="password" id="password"></br>
</div><div class="pure-control-group">
<label for="password">Verify Password*:</label>
<input placeholder="Verify password" type="password" name="password_2" id="password_2"></br>
</div><p id="validate-status" style="color:red"></p>
<div class="pure-controls">
<button id="register-button" type="submit" class="pure-button pure-button-primary" disabled>Access</button></div>
</form>
<script type="text/javascript" src="static/jquery-1.10.2.min.js"></script>
<script type="text/javascript" src="static/monitor-register.js"></script>
</body></html>
"""
{
"argv": [
"{{python_executable}}",
"{{kernel_dir}}",
"{{erp5_url}}",
"-f",
"{connection_file}"
],
"display_name": "{{display_name}}",
"language": "{{language_name}}",
"language_info": {"name": "python"}
}
...@@ -119,6 +119,29 @@ class TestMedusa(ERP5InstanceTestCase, TestPublishedURLIsReachableMixin): ...@@ -119,6 +119,29 @@ class TestMedusa(ERP5InstanceTestCase, TestPublishedURLIsReachableMixin):
def getInstanceParameterDict(cls): def getInstanceParameterDict(cls):
return {'_': json.dumps({'wsgi': False})} return {'_': json.dumps({'wsgi': False})}
class TestJupyter(ERP5InstanceTestCase, TestPublishedURLIsReachableMixin):
"""Test ERP5 Jupyter notebook
"""
__partition_reference__ = 'jupyter'
@classmethod
def getInstanceParameterDict(cls):
return {'_': json.dumps({'jupyter': {'enable': True}})}
def test_jupyter_notebook_is_reachable(self):
param_dict = self.getRootPartitionConnectionParameterDict()
self.assertEqual(
'https://[%s]:8888/tree' % self._ipv6_address,
param_dict['jupyter-url']
)
result = requests.get(
param_dict['jupyter-url'], verify=False, allow_redirects=False)
self.assertEqual(
[requests.codes.found, True, '/login?next=%2Ftree'],
[result.status_code, result.is_redirect, result.headers['Location']]
)
class TestBalancerPorts(ERP5InstanceTestCase): class TestBalancerPorts(ERP5InstanceTestCase):
"""Instantiate with two zope families, this should create for each family: """Instantiate with two zope families, this should create for each family:
......
...@@ -75,7 +75,7 @@ class ERP5Kernel(Kernel): ...@@ -75,7 +75,7 @@ class ERP5Kernel(Kernel):
self.title = None self.title = None
# Allowed HTTP request code list for making request to erp5 from Kernel # Allowed HTTP request code list for making request to erp5 from Kernel
# This list should be to used check status_code before making requests to erp5 # This list should be to used check status_code before making requests to erp5
self.allowed_HTTP_request_code_list = range(500, 511) self.allowed_HTTP_request_code_list = list(range(500, 511))
# Append request code 200 in the allowed HTTP status code list # Append request code 200 in the allowed HTTP status code list
self.allowed_HTTP_request_code_list.append(200) self.allowed_HTTP_request_code_list.append(200)
......
...@@ -19,7 +19,7 @@ md5sum = 1d5fe6cc4e48672ae7be1c223794a932 ...@@ -19,7 +19,7 @@ md5sum = 1d5fe6cc4e48672ae7be1c223794a932
[jupyter-notebook-config] [jupyter-notebook-config]
filename = jupyter_notebook_config.py.jinja filename = jupyter_notebook_config.py.jinja
md5sum = 720e90a829c63371696bc3009917a743 md5sum = 3da50c37760a42e42ae3f9d78d9ca449
[jupyter-set-password] [jupyter-set-password]
filename = jupyter_set_password.cgi.jinja filename = jupyter_set_password.cgi.jinja
...@@ -27,7 +27,7 @@ md5sum = b8d31441780b524a7e52d1710dd78385 ...@@ -27,7 +27,7 @@ md5sum = b8d31441780b524a7e52d1710dd78385
[erp5-kernel] [erp5-kernel]
filename = ERP5kernel.py filename = ERP5kernel.py
md5sum = 7d5309fe79afbcb455c0d8181b42e56c md5sum = da04b99b70b2e327c9e9b4cdd056098e
[kernel-json] [kernel-json]
filename = kernel.json.jinja filename = kernel.json.jinja
...@@ -35,4 +35,4 @@ md5sum = 33547be93a67530165e079dc3ecfdac3 ...@@ -35,4 +35,4 @@ md5sum = 33547be93a67530165e079dc3ecfdac3
[custom-js] [custom-js]
filename = custom.js filename = custom.js
md5sum = 40d938bb09261c65421a7725b40f87dc md5sum = 295aeee765bc4d09bf0686021f32f72c
...@@ -81,41 +81,51 @@ ...@@ -81,41 +81,51 @@
* @static * @static
*/ */
$([Jupyter.events]).on('notebook_loaded.Notebook', function(){ function prependERP5Help() {
var kernelname = Jupyter.notebook.kernel_selector.current_selection; var kernelname = Jupyter.notebook.kernel_selector.current_selection;
var display_text="<div class='output_subarea output_text output_result'>\ var display_text = "<div class='output_subarea output_text output_result'>\
<pre>Follow these steps to customize your notebook with ERP5 kernel :-</br>\ <pre>Follow these steps to customize your notebook with ERP5 kernel :-</br>\
1. Make sure you have 'erp5_data_notebook' business template installed in your ERP5</br>\ 1. Make sure you have 'erp5_data_notebook' business template installed in your ERP5</br>\
2. <b>%erp5_user &lt;your_erp5_username&gt;</b></br>\ 2. <b>%erp5_url &lt;your_erp5_url&gt;/Base_executeJupyter</b></br>\
3. <b>%erp5_password &lt;your_erp5_password&gt;</b></br>\ 3. <b>%erp5_user &lt;your_erp5_username&gt;</b></br>\
4. <b>%notebook_set_reference &lt;your_notebook_reference&gt;</b></br>\ 4. <b>%erp5_password &lt;your_erp5_password&gt;</b></br>\
It would be better to set the reference to match with erp5 reference pattern.</br>\ 5. <b>%notebook_set_reference &lt;your_notebook_reference&gt;</b></br>\
5. As soon as you see 'Please Proceed' message you can now access your erp5 using notebook.</br>\ It would be better to set the reference to match with erp5 reference pattern.</br>\
<p><u>OTHER USEFUL MAGICS</u> -</br>\ 6. As soon as you see 'Please Proceed' message you can now access your erp5 using notebook.</br>\
<b>%my_notebooks</b> -This is used to display all the notebooks created by the specific user.</br>\ <p><u>OTHER USEFUL MAGICS</u> -</br>\
<b>%notebook_set_title</b> -This sets the title of the current notebook.</br>\ <b>%my_notebooks</b> -This is used to display all the notebooks created by the specific user.</br>\
NOTE: Do not dynamically alter imported module objects as they are not being saved in DB, </br>\ <b>%notebook_set_title</b> -This sets the title of the current notebook.</br>\
so changes to them would be disregarded and would throw an error.</br>\ NOTE: Do not dynamically alter imported module objects as they are not being saved in DB, </br>\
<p><u>About classes, functions and global state on modules:</u></p>\ so changes to them would be disregarded and would throw an error.</br>\
Your code is going to be executed by ERP5, which can have many nodes </br>\ <p><u>About classes, functions and global state on modules:</u></p>\
and there is no guarantee that your code is always going to be executed by the same server.</br>\ Your code is going to be executed by ERP5, which can have many nodes </br>\
This means that objects which cannot be stored in the ZODB, like functions, classes and modules </br>\ and there is no guarantee that your code is always going to be executed by the same server.</br>\
won't be available across nodes. To solve this issue, you need to use a special object </br>\ This means that objects which cannot be stored in the ZODB, like functions, classes and modules </br>\
called 'environment' to store your global setup. This object was designed to hold global </br>\ won't be available across nodes. To solve this issue, you need to use a special object </br>\
state and restore it for each code cell. Example:</br></br>\ called 'environment' to store your global setup. This object was designed to hold global </br>\
<b>def my_setup():</br>\ state and restore it for each code cell. Example:</br></br>\
# import modules, define functions and classes</br>\ <b>def my_setup():</br>\
# and set global state on modules</br>\ # import modules, define functions and classes</br>\
# return dict of variables to be available in code cells</br>\ # and set global state on modules</br>\
{'my_var': 1}</br>\ # return dict of variables to be available in code cells</br>\
environment.define(my_setup, 'my custom setup')</b></br></br>\ {'my_var': 1}</br>\
After you execute this cell, the <b>my_setup</b> function will run before each of the</br>\ environment.define(my_setup, 'my custom setup')</b></br></br>\
following cells and the <b>my_var</b> variable will be created and set to 1.</br></br>\ After you execute this cell, the <b>my_setup</b> function will run before each of the</br>\
<b>WARNING:</b> it is not recommended to have too many setup functions in the environment, </br>\ following cells and the <b>my_var</b> variable will be created and set to 1.</br></br>\
because they will be executed in every code cell and can cause a substantial slow down.\ <b>WARNING:</b> it is not recommended to have too many setup functions in the environment, </br>\
</pre></div>"; because they will be executed in every code cell and can cause a substantial slow down.\
if (kernelname=="erp5"){ </pre></div>";
$('div#notebook-container').prepend(display_text);
} if (kernelname=="erp5"){
$('div#notebook-container').prepend(display_text);
}
}
define([
'base/js/namespace',
'base/js/promises'
], function(Jupyter, promises) {
promises.notebook_loaded.then(function() {
prependERP5Help();
}); });
});
\ No newline at end of file
...@@ -2,7 +2,7 @@ ...@@ -2,7 +2,7 @@
This script initializes Jupyter's configuration such as passwords and other This script initializes Jupyter's configuration such as passwords and other
things. It is run by IPython hence why it can use functions like get_config(). things. It is run by IPython hence why it can use functions like get_config().
''' '''
import ConfigParser import configparser
import random import random
from notebook.auth import passwd from notebook.auth import passwd
import os import os
...@@ -16,13 +16,13 @@ def random_password(length = 10): ...@@ -16,13 +16,13 @@ def random_password(length = 10):
knowledge_0 = '{{ config_cfg }}' knowledge_0 = '{{ config_cfg }}'
if not os.path.exists(knowledge_0): if not os.path.exists(knowledge_0):
print "Your software does <b>not</b> embed 0-knowledge. \ print("Your software does <b>not</b> embed 0-knowledge. \
This interface is useless in this case</body></html>" This interface is useless in this case</body></html>")
exit(0) exit(0)
c = get_config() c = get_config()
parser = ConfigParser.ConfigParser() parser = configparser.ConfigParser()
parser.read(knowledge_0) parser.read(knowledge_0)
if not parser.has_section("jupyter_notebook"): if not parser.has_section("jupyter_notebook"):
......
...@@ -11,6 +11,9 @@ parts += ...@@ -11,6 +11,9 @@ parts +=
jupyter-notebook-initialized-scripts jupyter-notebook-initialized-scripts
instance-jupyter-notebook instance-jupyter-notebook
[python]
part = python3
[gcc] [gcc]
# Always build GCC for Fortran (see openblas). # Always build GCC for Fortran (see openblas).
max_version = 0 max_version = 0
...@@ -63,40 +66,49 @@ context = ...@@ -63,40 +66,49 @@ context =
key monitor_template_rendered buildout:directory key monitor_template_rendered buildout:directory
[versions] [versions]
Pygments = 2.2.0 Pygments = 2.7.2
astor = 0.5 astor = 0.5
async-generator = 1.10
backports-abc = 0.5 backports-abc = 0.5
backports.functools-lru-cache = 1.6.1 backports.functools-lru-cache = 1.6.1
backports.shutil-get-terminal-size = 1.0.0 backports.shutil-get-terminal-size = 1.0.0
bleach = 3.2.1
cycler = 0.10.0 cycler = 0.10.0
ipykernel = 4.5.2 defusedxml = 0.6.0
entrypoints = 0.3
ipykernel = 5.3.4
ipython = 5.3.0 ipython = 5.3.0
ipython-genutils = 0.1.0 ipython-genutils = 0.1.0
ipywidgets = 6.0.0 ipywidgets = 6.0.0
jupyter-client = 5.0.0 jupyter-client = 6.1.7
jupyter-core = 4.3.0 jupyter-core = 4.7.0
jupyterlab = 0.26.3 jupyterlab = 0.26.3
jupyterlab-launcher = 0.3.1 jupyterlab-launcher = 0.3.1
jupyterlab-pygments = 0.1.2
matplotlib = 2.1.2 matplotlib = 2.1.2
mistune = 0.7.3 mistune = 0.8.4
nbformat = 4.3.0 nest-asyncio = 1.4.3
notebook = 4.4.1 nbclient = 0.5.1
pandas = 0.19.2 nbformat = 5.0.8
notebook = 6.1.5
numpy = 1.14.6
pandas = 0.25.3
pandocfilters = 1.4.3
plone.recipe.command = 1.1 plone.recipe.command = 1.1
prompt-toolkit = 1.0.13 prompt-toolkit = 1.0.13
ptyprocess = 0.5.1 ptyprocess = 0.5.1
pyzmq = 16.0.2 pyzmq = 20.0.0
scikit-learn = 0.18.1 scikit-learn = 0.20.4
seaborn = 0.7.1 seaborn = 0.7.1
simplegeneric = 0.8.1 simplegeneric = 0.8.1
slapos.recipe.template = 4.4 slapos.recipe.template = 4.4
statsmodels = 0.8.0 statsmodels = 0.11.1
terminado = 0.6 testpath = 0.4.4
tornado = 4.4.2 terminado = 0.9.1
traitlets = 4.3.2 tornado = 6.1
traitlets = 5.0.5
webencodings = 0.5.1
widgetsnbextension = 2.0.0 widgetsnbextension = 2.0.0
# numpy >= 1.13.1 is required for numpy.core.multiarray
numpy = 1.13.1
# Required by: # Required by:
...@@ -104,41 +116,55 @@ numpy = 1.13.1 ...@@ -104,41 +116,55 @@ numpy = 1.13.1
certifi = 2020.6.20 certifi = 2020.6.20
# Required by: # Required by:
# notebook==4.3.2 # notebook==6.1.5
# nbconvert 4.2.0 depends on entrypoints egg that is not available as tar/zip source. Send2Trash = 1.5.0
nbconvert = 4.1.0
# Required by:
# notebook==6.1.5
argon2-cffi = 20.1.0
# Required by:
# notebook==6.1.5
nbconvert = 6.0.7
# Required by: # Required by:
# ipython==5.3.0 # ipython==5.3.0
pathlib2 = 2.2.1 pathlib2 = 2.2.1
# Required by: # Required by:
# statsmodels==0.8.0 # statsmodels==0.11.1
patsy = 0.4.1 patsy = 0.5.1
# Required by: # Required by:
# ipython==5.3.0 # ipython==5.3.0
pexpect = 4.2.1 pexpect = 4.8.0
# Required by: # Required by:
# ipython==5.3.0 # ipython==5.3.0
pickleshare = 0.7.4 pickleshare = 0.7.4
# Required by: # Required by:
# matplotlib==2.1.2 # notebook==6.1.5
# pandas==0.19.2 prometheus-client = 0.9.0
python-dateutil = 2.6.0
# Required by:
# statsmodels==0.11.1
python-dateutil = 2.8.1
# Required by: # Required by:
# pathlib2==2.2.1 # pathlib2==2.2.1
scandir = 1.5 scandir = 1.5
# Required by: # Required by:
# statsmodels==0.8.0 # statsmodels==0.11.1
scipy = 0.19.0 pytz = 2020.4
# Required by: # Required by:
# tornado==4.4.2 # statsmodels==0.11.1
scipy = 1.0.1
# Required by:
# tornado==6.1
singledispatch = 3.4.0.3 singledispatch = 3.4.0.3
# Required by: # Required by:
......
...@@ -26,7 +26,7 @@ ...@@ -26,7 +26,7 @@
############################################################################## ##############################################################################
import httplib import http.client
import json import json
import os import os
import requests import requests
...@@ -60,7 +60,7 @@ class TestJupyter(InstanceTestCase): ...@@ -60,7 +60,7 @@ class TestJupyter(InstanceTestCase):
result = requests.get( result = requests.get(
connection_dict['url'], verify=False, allow_redirects=False) connection_dict['url'], verify=False, allow_redirects=False)
self.assertEqual( self.assertEqual(
[httplib.FOUND, True, '/login?next=%2Ftree'], [http.client.FOUND, True, '/login?next=%2Ftree'],
[result.status_code, result.is_redirect, result.headers['Location']] [result.status_code, result.is_redirect, result.headers['Location']]
) )
...@@ -68,7 +68,7 @@ class TestJupyter(InstanceTestCase): ...@@ -68,7 +68,7 @@ class TestJupyter(InstanceTestCase):
connection_dict['jupyter-classic-url'], connection_dict['jupyter-classic-url'],
verify=False, allow_redirects=False) verify=False, allow_redirects=False)
self.assertEqual( self.assertEqual(
[httplib.FOUND, True, '/login?next=%2Ftree'], [http.client.FOUND, True, '/login?next=%2Ftree'],
[result.status_code, result.is_redirect, result.headers['Location']] [result.status_code, result.is_redirect, result.headers['Location']]
) )
...@@ -76,6 +76,6 @@ class TestJupyter(InstanceTestCase): ...@@ -76,6 +76,6 @@ class TestJupyter(InstanceTestCase):
connection_dict['jupyterlab-url'], connection_dict['jupyterlab-url'],
verify=False, allow_redirects=False) verify=False, allow_redirects=False)
self.assertEqual( self.assertEqual(
[httplib.FOUND, True, '/login?next=%2Flab'], [http.client.FOUND, True, '/login?next=%2Flab'],
[result.status_code, result.is_redirect, result.headers['Location']] [result.status_code, result.is_redirect, result.headers['Location']]
) )
...@@ -13,6 +13,7 @@ extra-eggs += ...@@ -13,6 +13,7 @@ extra-eggs +=
[template] [template]
extra = extra =
helloworld ${slapos.test.helloworld-setup:setup} helloworld ${slapos.test.helloworld-setup:setup}
jupyter ${slapos.test.jupyter-setup:setup}
monitor ${slapos.test.monitor-setup:setup} monitor ${slapos.test.monitor-setup:setup}
plantuml ${slapos.test.plantuml-setup:setup} plantuml ${slapos.test.plantuml-setup:setup}
powerdns ${slapos.test.powerdns-setup:setup} powerdns ${slapos.test.powerdns-setup:setup}
......
...@@ -271,7 +271,6 @@ extra = ...@@ -271,7 +271,6 @@ extra =
re6stnet ${slapos.test.re6stnet-setup:setup} re6stnet ${slapos.test.re6stnet-setup:setup}
seleniumserver ${slapos.test.seleniumserver-setup:setup} seleniumserver ${slapos.test.seleniumserver-setup:setup}
jstestnode ${slapos.test.jstestnode-setup:setup} jstestnode ${slapos.test.jstestnode-setup:setup}
jupyter ${slapos.test.jupyter-setup:setup}
nextcloud ${slapos.test.nextcloud-setup:setup} nextcloud ${slapos.test.nextcloud-setup:setup}
turnserver ${slapos.test.turnserver-setup:setup} turnserver ${slapos.test.turnserver-setup:setup}
theia ${slapos.test.theia-setup:setup} theia ${slapos.test.theia-setup:setup}
......
...@@ -56,8 +56,8 @@ extends = ...@@ -56,8 +56,8 @@ extends =
../../component/pylint/buildout.cfg ../../component/pylint/buildout.cfg
../../component/perl-Image-ExifTool/buildout.cfg ../../component/perl-Image-ExifTool/buildout.cfg
../../component/wendelin.core/buildout.cfg ../../component/wendelin.core/buildout.cfg
../../component/jupyter-py2/buildout.cfg
../../stack/caucase/buildout.cfg ../../stack/caucase/buildout.cfg
../../software/jupyter/software.cfg
../../software/neoppod/software-common.cfg ../../software/neoppod/software-common.cfg
# keep neoppod extends last # keep neoppod extends last
......
...@@ -191,7 +191,7 @@ scandir = 1.10.0 ...@@ -191,7 +191,7 @@ scandir = 1.10.0
setuptools-dso = 1.7 setuptools-dso = 1.7
rubygemsrecipe = 0.3.0 rubygemsrecipe = 0.3.0
six = 1.12.0 six = 1.12.0
slapos.cookbook = 1.0.167 slapos.cookbook = 1.0.171
slapos.core = 1.6.3 slapos.core = 1.6.3
slapos.extension.strip = 0.4 slapos.extension.strip = 0.4
slapos.extension.shared = 1.0 slapos.extension.shared = 1.0
......
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