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  1. 27 Jan, 2016 2 commits
  3. 26 Jan, 2016 2 commits
  5. 21 Jan, 2016 1 commit
  7. 19 Jan, 2016 3 commits
  9. 18 Jan, 2016 1 commit
  11. 05 Jan, 2016 1 commit
    • Dan Good's avatar
      deque: check HAVE_STATEMENT_EXPR, tweaks from feedback · 3022d16d
      Dan Good authored 
      Thanks to the detailed feedback from David Gibson, I made the
following improvements:

* add missing includes
* check for statement expression support, give an error if absent
* ccanlint directive to skip "without features" steps
* add license ref to top of source files
* rename run1.c test to api1.c
Signed-off-by: default avatarDan Good <dan@dancancode.com>
      3022d16d
  13. 28 Dec, 2015 1 commit
  15. 14 Dec, 2015 1 commit
  17. 10 Dec, 2015 2 commits
  19. 09 Dec, 2015 3 commits
  21. 20 Nov, 2015 12 commits
  23. 15 Nov, 2015 1 commit
    • Andrew Jeffery's avatar
      strgrp: Cache cosine popcounts to reduce computation · 4a439212
      Andrew Jeffery authored 
      Neatly, this reduces some of the OpenMP-related noise in the
implementation by removing the need for the include. The loop body of
grp_for() is also clearer as a result of the change; the changes to the
function interfaces motivated a re-think of the complexity here.
      4a439212
  25. 13 Nov, 2015 1 commit
  27. 12 Nov, 2015 1 commit
  29. 08 Nov, 2015 1 commit
    • Andrew Jeffery's avatar
      strgrp: Add cosine similarity filter · e95575c4
      Andrew Jeffery authored 
      The cosine similarity measure[1] (O(m + n)) contributes a decent runtime
reduction when used as a filter prior to execution of more expensive
algorithms such as LCS[2] (O(m * n)).

A private test set of 3500 strings was used to quantify the improvement.
The shape of the test set is described by Python's Pandas module as:

    >>> frames.apply(len).describe()
    count    3500.000000
    mean       47.454286
    std        14.980197
    min        10.000000
    25%        37.000000
    50%        45.000000
    75%        61.000000
    max       109.000000
    dtype: float64
    >>>

The tests were performed on a lightly loaded Lenovo X201s stocked with a
Intel Core i7 L 640 @ 2.13GHz CPU with 3.7 GiB of memory. The test was
compiled with GCC 4.9.3:

    $ gcc --version
    gcc (Gentoo 4.9.3 p1.0, pie-0.6.2) 4.9.3
    Copyright (C) 2015 Free Software Foundation, Inc.
    This is free software; see the source for copying conditions.  There is NO
    warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Using the test program outlined below, ten runs for input set sizes
incrementing in batches of 500 were taken prior to filtering with cosine
similarity:

    500:  0.61, 0.25, 0.08, 0.07, 0.07, 0.07, 0.09, 0.07, 0.07, 0.07
    1000: 0.33, 0.32, 0.34, 0.32, 0.32, 0.33, 0.32, 0.32, 0.34, 0.32
    1500: 0.72, 1.53, 0.72, 0.70, 0.72, 0.70, 0.72, 0.71, 1.46, 0.71
    2000: 1.22, 1.20, 1.22, 1.98, 1.20, 1.20, 1.22, 1.94, 1.20, 1.20
    2500: 1.97, 2.72, 1.94, 2.33, 2.44, 1.94, 2.82, 1.93, 1.94, 2.69
    3000: 2.69, 3.41, 2.66, 3.38, 2.67, 3.42, 2.63, 3.44, 2.65, 3.39
    3500: 4.18, 3.65, 4.21, 4.21, 3.56, 4.21, 4.16, 3.63, 4.20, 4.13

After adding the cosine similarity filter the runtimes became:

    500:  0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02, 0.02
    1000: 0.08, 0.07, 0.07, 0.07, 0.08, 0.07, 0.07, 0.08, 0.07, 0.07
    1500: 0.16, 0.16, 0.15, 0.16, 0.16, 0.15, 0.15, 0.15, 0.16, 0.16
    2000: 0.26, 0.26, 0.25, 0.26, 0.26, 0.26, 0.25, 0.26, 0.26, 0.26
    2500: 0.41, 0.41, 0.41, 0.40, 0.42, 0.42, 0.42, 0.41, 0.41, 0.41
    3000: 0.58, 0.56, 0.57, 0.56, 0.58, 0.57, 0.56, 0.56, 0.57, 0.55
    3500: 0.75, 0.74, 0.73, 0.74, 0.74, 0.73, 0.72, 0.75, 0.75, 0.75

As such, on average the runtime improvements are:

    N       Avg Pre         Avg Post        Improvement (Pre / Post)
    500     0.145           0.02            7.25
    1000    0.326           0.073           4.47
    1500    0.869           0.156           5.57
    2000    1.358           0.258           5.26
    2500    2.272           0.412           5.51
    3000    3.034           0.566           5.36
    3500    4.014           0.74            5.42

The test driver is as below, where both it and its dependencies were
compiled with 'CFLAGS=-O2 -fopenmp' and linked with 'LDFLAGS=-fopenmp',
'LDLIBS=-lm':

    $ cat test.c
    #include "config.h"
    #include <stdio.h>
    #include <stdlib.h>
    #include <string.h>
    #include "ccan/strgrp/strgrp.h"

    int main(void) {
        FILE *f;
        char *buf;
        struct strgrp *ctx;
        f = fdopen(0, "r");
    #define BUF_SIZE 512
        buf = malloc(BUF_SIZE);
        ctx = strgrp_new(0.85);
        while(fgets(buf, BUF_SIZE, f)) {
            buf[strcspn(buf, "\r\n")] = '\0';
            if (!strgrp_add(ctx, buf, NULL)) {
                printf("Failed to classify %s\n", buf);
            }
        }
        strgrp_free(ctx);
        free(buf);
        fclose(f);
        return 0;
    }

[1] https://en.wikipedia.org/wiki/Cosine_similarity
[2] https://en.wikipedia.org/wiki/Longest_common_subsequence_problem
      e95575c4
  31. 03 Nov, 2015 2 commits
    • David Gibson's avatar
      aga: Error codes · afae9c82
      David Gibson authored 
      Add an enum to record error codes for aga routines.  The current
algorithms, dfs and bfs don't have any error conditions except those
reported by callbacks.  So, for now, the only code is "no error", but this
will be expanded in future.
Signed-off-by: default avatarDavid Gibson <david@gibson.dropbear.id.au>
      afae9c82
    • David Gibson's avatar
      aga: Fix initialization bug in aga_for_each_edge_info · 2ab26c62
      David Gibson authored 
      The aga_for_each_edge_info macro is constructed so that if the edge_info
callback returns an error, the for loop terminates early and leaves the
_err parameter set to the error.  On successful completion of the loop,
_err should be zero.

However, on a node with no edges, _err will not be initialized, meaning
that it could be non-zero even on successful (trivial) completion of the
loop.  This fixes the bug.
Signed-off-by: default avatarDavid Gibson <david@gibson.dropbear.id.au>
      2ab26c62
  33. 02 Nov, 2015 1 commit
  35. 27 Oct, 2015 1 commit
  37. 25 Oct, 2015 3 commits
    • David Gibson's avatar
      lqueue: Streamline interface with TCON_CONTAINER · 42b7ab48
      David Gibson authored 
      The interfaces the lqueue module currently has implement (partial) type
safety in a somewhat clunky way - types and member names need to be passed
to a number of entry points.

This patch uses the new TCON_CONTAINER magic to stash the typing
information into the declaration of the queue object, so it no longer needs
to be explicitly passed to later calls.

This does alter the lqueue interface incompatibly.  I think the module
is young enough that we can reasonably do that.  One other module,
'aga', was using lqueue, and this also includes fixes so that it still
works.
Signed-off-by: default avatarDavid Gibson <david@gibson.dropbear.id.au>
      42b7ab48
    • David Gibson's avatar
      lstack: Streamline interface with TCON_CONTAINER · e47d78e9
      David Gibson authored 
      The interfaces the lstack module currently has implement (partial) type
safety in a somewhat clunk way - types and member names need to be passed
to a number of entry points.

This patch uses the new TCON_CONTAINER magic to stash the typing
information into the declaration of the stack object, so it no longer needs
to be explicitly passed to later calls.

This does alter the lstack interface incompatibly.  I think the module
is young enough that we can reasonably do that.  One other module,
'aga', was using lstack, and this also includes fixes so that it still
works.
Signed-off-by: default avatarDavid Gibson <david@gibson.dropbear.id.au>
      e47d78e9
    • David Gibson's avatar
      tcon: Encode information on container members in "type" canaries · 0ddea413
      David Gibson authored 
      Add "container canaries" to tcon.  This allows information about a specific
member of a container structure to be encoded with TCON or TCON_WRAP.  Once
that's done, tcon_container_of() and tcon_member_of() can be used to
translate between member and container pointers based on the canary
information, without having to repeat the type and member details.
Signed-off-by: default avatarDavid Gibson <david@gibson.dropbear.id.au>
      0ddea413
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