Merge remote-tracking branch 'upstream/master' into ce-to-ee-2018-09-12

# Conflicts:
#	doc/api/projects.md
#	lib/api/helpers/projects_helpers.rb

[ci skip]

GITLAB_SHELL_VERSION

-8.3.1
+8.3.2

Gemfile.lock

@@ -133,7 +133,7 @@ GEM
     coderay (1.1.2)
     coercible (1.0.0)
       descendants_tracker (~> 0.0.1)
-    commonmarker (0.17.8)
+    commonmarker (0.17.13)
       ruby-enum (~> 0.5)
     concord (0.1.5)
       adamantium (~> 0.2.0)

app/assets/javascripts/commons/gitlab_ui.js

 import Vue from 'vue';
+import Pagination from '@gitlab-org/gitlab-ui/dist/components/base/pagination';
 import progressBar from '@gitlab-org/gitlab-ui/dist/components/base/progress_bar';
 import modal from '@gitlab-org/gitlab-ui/dist/components/base/modal';
 import loadingIcon from '@gitlab-org/gitlab-ui/dist/components/base/loading_icon';
@@ -6,6 +7,7 @@ import loadingIcon from '@gitlab-org/gitlab-ui/dist/components/base/loading_icon
 import dModal from '@gitlab-org/gitlab-ui/dist/directives/modal';
 import dTooltip from '@gitlab-org/gitlab-ui/dist/directives/tooltip';
 
+Vue.component('gl-pagination', Pagination);
 Vue.component('gl-progress-bar', progressBar);
 Vue.component('gl-ui-modal', modal);
 Vue.component('gl-loading-icon', loadingIcon);

app/assets/javascripts/groups/components/groups.vue

 <script>
-import tablePagination from '~/vue_shared/components/table_pagination.vue';
+import PaginationLinks from '~/vue_shared/components/pagination_links.vue';
 import eventHub from '../event_hub';
 import { getParameterByName } from '../../lib/utils/common_utils';
 
 export default {
   components: {
-    tablePagination,
+    PaginationLinks,
   },
   props: {
     groups: {
@@ -49,15 +49,18 @@ export default {
     >
       {{ searchEmptyMessage }}
     </div>
-    <group-folder
-      v-if="!searchEmpty"
-      :groups="groups"
-      :action="action"
-    />
-    <table-pagination
-      v-if="!searchEmpty"
-      :change="change"
-      :page-info="pageInfo"
-    />
+    <template
+      v-else
+    >
+      <group-folder
+        :groups="groups"
+        :action="action"
+      />
+      <pagination-links
+        :change="change"
+        :page-info="pageInfo"
+        class="d-flex justify-content-center prepend-top-default"
+      />
+    </template>
   </div>
 </template>

app/assets/javascripts/vue_shared/components/pagination_links.vue

+<script>
+import { s__ } from '../../locale';
+
+export default {
+  props: {
+    change: {
+      type: Function,
+      required: true,
+    },
+    pageInfo: {
+      type: Object,
+      required: true,
+    },
+  },
+  firstText: s__('Pagination|« First'),
+  prevText: s__('Pagination|Prev'),
+  nextText: s__('Pagination|Next'),
+  lastText: s__('Pagination|Last »'),
+};
+</script>
+
+<template>
+  <gl-pagination
+    v-bind="$attrs"
+    :change="change"
+    :page="pageInfo.page"
+    :per-page="pageInfo.perPage"
+    :total-items="pageInfo.total"
+    :first-text="$options.firstText"
+    :prev-text="$options.prevText"
+    :next-text="$options.nextText"
+    :last-text="$options.lastText"
+  />
+</template>

app/controllers/projects/merge_requests_controller.rb

@@ -340,6 +340,7 @@ class Projects::MergeRequestsController < Projects::MergeRequests::ApplicationCo
     @source_project = @merge_request.source_project
     @target_project = @merge_request.target_project
     @target_branches = @merge_request.target_project.repository.branch_names
+    @noteable = @merge_request
   end
 
   def finder_type

app/finders/projects_finder.rb

@@ -49,6 +49,7 @@ class ProjectsFinder < UnionFinder
     collection = by_search(collection)
     collection = by_archived(collection)
     collection = by_custom_attributes(collection)
+    collection = by_deleted_status(collection)
 
     sort(collection)
   end
@@ -131,6 +132,10 @@ class ProjectsFinder < UnionFinder
     params[:search].present? ? items.search(params[:search]) : items
   end
 
+  def by_deleted_status(items)
+    params[:without_deleted].present? ? items.without_deleted : items
+  end
+
   def sort(items)
     params[:sort].present? ? items.sort_by_attribute(params[:sort]) : items.order_id_desc
   end

app/models/ci/build.rb

@@ -44,6 +44,7 @@ module Ci
     delegate :url, to: :runner_session, prefix: true, allow_nil: true
     delegate :terminal_specification, to: :runner_session, allow_nil: true
     delegate :gitlab_deploy_token, to: :project
+    delegate :trigger_short_token, to: :trigger_request, allow_nil: true
 
     ##
     # The "environment" field for builds is a String, and is the unexpanded name!

app/models/ci/trigger_request.rb

@@ -8,6 +8,8 @@ module Ci
     belongs_to :pipeline, foreign_key: :commit_id
     has_many :builds
 
+    delegate :short_token, to: :trigger, prefix: true, allow_nil: true
+
     # We switched to Ci::PipelineVariable from Ci::TriggerRequest.variables.
     # Ci::TriggerRequest doesn't save variables anymore.
     validates :variables, absence: true

app/models/clusters/applications/jupyter.rb

@@ -73,10 +73,19 @@ module Clusters
               "clientSecret" => oauth_application.secret,
               "callbackUrl" => callback_url
             }
+          },
+          "singleuser" => {
+            "extraEnv" => {
+              "GITLAB_PROJECT_ID" => project_id
+            }
           }
         }
       end
 
+      def project_id
+        cluster&.project&.id
+      end
+
       def gitlab_url
         Gitlab.config.gitlab.url
       end

app/models/project.rb

@@ -582,7 +582,6 @@ class Project < ActiveRecord::Base
   end
 
   def cleanup
-    @repository&.cleanup
     @repository = nil
   end
 

app/models/repository.rb

@@ -87,10 +87,6 @@ class Repository
 
   alias_method :raw, :raw_repository
 
-  def cleanup
-    @raw_repository&.cleanup
-  end
-
   # Don't use this! It's going away. Use Gitaly to read or write from repos.
   def path_to_repo
     @path_to_repo ||=

app/serializers/build_details_entity.rb

@@ -59,6 +59,12 @@ class BuildDetailsEntity < JobEntity
     raw_project_job_path(project, build)
   end
 
+  expose :trigger, if: -> (*) { build.trigger_request } do
+    expose :trigger_short_token, as: :short_token
+
+    expose :trigger_variables, as: :variables, using: TriggerVariableEntity
+  end
+
   private
 
   def build_failed_issue_options

app/serializers/trigger_variable_entity.rb

+# frozen_string_literal: true
+
+class TriggerVariableEntity < Grape::Entity
+  include RequestAwareEntity
+
+  expose :key, :value, :public
+end

app/workers/project_service_worker.rb

@@ -7,6 +7,10 @@ class ProjectServiceWorker
 
   def perform(hook_id, data)
     data = data.with_indifferent_access
-    Service.find(hook_id).execute(data)
+    service = Service.find(hook_id)
+    service.execute(data)
+  rescue => error
+    service_class = service&.class&.name || "Not Found"
+    logger.error class: self.class.name, service_class: service_class, message: error.message
   end
 end

changelogs/unreleased/50678-ignores-project-pending-delete.yml

+---
+title: Excludes project marked from deletion to projects API
+merge_request: 21542
+author: Jacopo Beschi @jacopo-beschi
+type: changed

changelogs/unreleased/50989-add-trigger-information-to-job-api.yml

+---
+title: Add trigger information in job API
+merge_request: 21495
+author:
+type: other

changelogs/unreleased/clean-gitlab-git.yml

+---
+title: Remove Rugged and shell code from Gitlab::Git
+merge_request: 21488
+author:
+type: other

changelogs/unreleased/fix-mention-in-edit-mr.yml

+---
+title: Fixed mention autocomplete in edit merge request.
+merge_request:
+author:
+type: fixed

changelogs/unreleased/issue_50528.yml

+---
+title: Log project services errors when executing async
+merge_request:
+author:
+type: other

changelogs/unreleased/update-gitlab-shell.yml

+---
+title: Update GitLab Shell to v8.3.2
+merge_request: 21701
+author:
+type: fixed

db/fixtures/development/17_cycle_analytics.rb

@@ -6,20 +6,6 @@ class Gitlab::Seeder::CycleAnalytics
     @project = project
     @user = User.admins.first
     @issue_count = perf ? 1000 : 5
-    stub_git_pre_receive!
-  end
-
-  # The GitLab API needn't be running for the fixtures to be
-  # created. Since we're performing a number of git actions
-  # here (like creating a branch or committing a file), we need
-  # to disable the `pre_receive` hook in order to remove this
-  # dependency on the GitLab API.
-  def stub_git_pre_receive!
-    Gitlab::Git::HooksService.class_eval do
-      def run_hook(name)
-        [true, '']
-      end
-    end
   end
 
   def seed_metrics!

doc/administration/monitoring/prometheus/index.md

@@ -97,10 +97,10 @@ For a more fully featured dashboard, Grafana can be used and has
 
 Sample Prometheus queries:
 
-- **% Memory used:** `(1 - ((node_memory_MemFree + node_memory_Cached) / node_memory_MemTotal)) * 100`
-- **% CPU load:** `1 - rate(node_cpu{mode="idle"}[5m])`
-- **Data transmitted:** `irate(node_network_transmit_bytes[5m])`
-- **Data received:** `irate(node_network_receive_bytes[5m])`
+- **% Memory available:** `((node_memory_MemAvailable_bytes / node_memory_MemTotal_bytes) or ((node_memory_MemFree_bytes + node_memory_Buffers_bytes + node_memory_Cached_bytes) / node_memory_MemTotal_bytes)) * 100`
+- **% CPU utilization:** `1 - avg without (mode,cpu) (rate(node_cpu_seconds_total{mode="idle"}[5m]))`
+- **Data transmitted:** `rate(node_network_transmit_bytes_total{device!="lo"}[5m])`
+- **Data received:** `rate(node_network_receive_bytes_total{device!="lo"}[5m])`
 
 ## Configuring Prometheus to monitor Kubernetes
 

doc/api/projects.md

@@ -667,6 +667,7 @@ POST /projects
 | `printing_merge_request_link_enabled` | boolean | no | Show link to create/view merge request when pushing from the command line |
 | `ci_config_path` | string | no | The path to CI config file |
 | `initialize_with_readme` | boolean | no | `false` by default |
+<<<<<<< HEAD
 | `repository_storage` | string | no | Which storage shard the repository is on. Available only to admins |
 | `approvals_before_merge` | integer | no | How many approvers should approve merge request by default |
 | `mirror` | boolean | no | Enables pull mirroring in a project |
@@ -675,6 +676,8 @@ POST /projects
 >**Note**: If your HTTP repository is not publicly accessible,
 add authentication information to the URL: `https://username:password@gitlab.company.com/group/project.git`
 where `password` is a public access key with the `api` scope enabled.
+=======
+>>>>>>> upstream/master
 
 ## Create project for user
 

doc/development/code_review.md

@@ -27,8 +27,9 @@ There are a few rules to get your merge request accepted:
    ask or assign any [reviewers][projects] for a first review.
    1. If you need some guidance (e.g. it's your first merge request), feel free
       to ask one of the [Merge request coaches][team].
-   1. The reviewer will assign the merge request to a maintainer once the
-      reviewer is satisfied with the state of the merge request.
+   1. It is recommended that you assign a maintainer that is from a different team than your own.
+      This ensures that all code across GitLab is consistent and can be easily understood by all contributors.
+      
 1. Keep in mind that maintainers are also going to perform a final code review.
    The ideal scenario is that the reviewer has already addressed any concerns
    the maintainer would have found, and the maintainer only has to perform the

doc/development/diffs.md

@@ -15,9 +15,9 @@ We're constantly moving Rugged calls to Gitaly and the progress can be followed
 
 When refreshing a Merge Request (pushing to a source branch, force-pushing to target branch, or if the target branch now contains any commits from the MR)
 we fetch the comparison information using `Gitlab::Git::Compare`, which fetches `base` and `head` data using Gitaly and diff between them through
-`Gitlab::Git::Diff.between` (which uses _Gitaly_ if it's enabled, otherwise _Rugged_).
+`Gitlab::Git::Diff.between`.
 The diffs fetching process _limits_ single file diff sizes and the overall size of the whole diff through a series of constant values. Raw diff files are
-then persisted on `merge_request_diff_files` table. 
+then persisted on `merge_request_diff_files` table.
 
 Even though diffs higher than 10kb are collapsed (`Gitlab::Git::Diff::COLLAPSE_LIMIT`), we still keep them on Postgres. However, diff files over _safety limits_
 (see the [Diff limits section](#diff-limits)) are _not_ persisted.
@@ -63,34 +63,34 @@ File diffs will be collapsed (but be expandable) if 100 files have already been
 
 
 ```ruby
-Gitlab::Git::DiffCollection.collection_limits[:safe_max_lines] = Gitlab::Git::DiffCollection::DEFAULT_LIMITS[:max_lines] = 5000 
+Gitlab::Git::DiffCollection.collection_limits[:safe_max_lines] = Gitlab::Git::DiffCollection::DEFAULT_LIMITS[:max_lines] = 5000
 ```
 
 File diffs will be collapsed (but be expandable) if 5000 lines have already been rendered.
 
 
 ```ruby
-Gitlab::Git::DiffCollection.collection_limits[:safe_max_bytes] = Gitlab::Git::DiffCollection.collection_limits[:safe_max_files] * 5.kilobytes = 500.kilobytes 
+Gitlab::Git::DiffCollection.collection_limits[:safe_max_bytes] = Gitlab::Git::DiffCollection.collection_limits[:safe_max_files] * 5.kilobytes = 500.kilobytes
 ```
 
 File diffs will be collapsed (but be expandable) if 500 kilobytes have already been rendered.
 
 
 ```ruby
-Gitlab::Git::DiffCollection.collection_limits[:max_files] = Commit::DIFF_HARD_LIMIT_FILES = 1000 
+Gitlab::Git::DiffCollection.collection_limits[:max_files] = Commit::DIFF_HARD_LIMIT_FILES = 1000
 ```
 
 No more files will be rendered at all if 1000 files have already been rendered.
 
 
 ```ruby
-Gitlab::Git::DiffCollection.collection_limits[:max_lines] = Commit::DIFF_HARD_LIMIT_LINES = 50000 
+Gitlab::Git::DiffCollection.collection_limits[:max_lines] = Commit::DIFF_HARD_LIMIT_LINES = 50000
 ```
 
 No more files will be rendered at all if 50,000 lines have already been rendered.
 
 ```ruby
-Gitlab::Git::DiffCollection.collection_limits[:max_bytes] = Gitlab::Git::DiffCollection.collection_limits[:max_files] * 5.kilobytes = 5000.kilobytes 
+Gitlab::Git::DiffCollection.collection_limits[:max_bytes] = Gitlab::Git::DiffCollection.collection_limits[:max_files] * 5.kilobytes = 5000.kilobytes
 ```
 
 No more files will be rendered at all if 5 megabytes have already been rendered.
@@ -131,7 +131,7 @@ File diff will be suppressed (technically different from collapsed, but behaves
 ## Viewers
 
 Diff Viewers, which can be found on `models/diff_viewer/*` are classes used to map metadata about each type of Diff File. It has information
-whether it's a binary, which partial should be used to render it or which File extensions this class accounts for. 
+whether it's a binary, which partial should be used to render it or which File extensions this class accounts for.
 
 `DiffViewer::Base` validates _blobs_ (old and new versions) content, extension and file type in order to check if it can be rendered.
 

lib/api/helpers.rb

@@ -106,10 +106,12 @@ module API
     end
 
     def find_project(id)
+      projects = Project.without_deleted
+
       if id.is_a?(Integer) || id =~ /^\d+$/
-        Project.find_by(id: id)
+        projects.find_by(id: id)
       elsif id.include?("/")
-        Project.find_by_full_path(id)
+        projects.find_by_full_path(id)
       end
     end
 
@@ -399,7 +401,7 @@ module API
     end
 
     def project_finder_params
-      finder_params = {}
+      finder_params = { without_deleted: true }
       finder_params[:owned] = true if params[:owned].present?
       finder_params[:non_public] = true if params[:membership].present?
       finder_params[:starred] = true if params[:starred].present?

lib/api/helpers/projects_helpers.rb

@@ -27,6 +27,7 @@ module API
             optional :printing_merge_request_link_enabled, type: Boolean, desc: 'Show link to create/view merge request when pushing from the command line'
             optional :merge_method, type: String, values: %w(ff rebase_merge merge), desc: 'The merge method used when merging merge requests'
             optional :initialize_with_readme, type: Boolean, desc: "Initialize a project with a README.md"
+<<<<<<< HEAD
           end
 
           params :optional_project_params_ee do
@@ -35,6 +36,8 @@ module API
             optional :external_authorization_classification_label, type: String, desc: 'The classification label for the project'
             optional :mirror, type: Boolean, desc: 'Enables pull mirroring in a project'
             optional :mirror_trigger_builds, type: Boolean, desc: 'Pull mirroring triggers builds'
+=======
+>>>>>>> upstream/master
           end
 
           params :optional_project_params do

lib/gitlab/git/committer_with_hooks.rb

-module Gitlab
-  module Git
-    class CommitterWithHooks < Gollum::Committer
-      attr_reader :gl_wiki
-
-      def initialize(gl_wiki, options = {})
-        @gl_wiki = gl_wiki
-        super(gl_wiki.gollum_wiki, options)
-      end
-
-      def commit
-        # TODO: Remove after 10.8
-        return super unless allowed_to_run_hooks?
-
-        result = Gitlab::Git::OperationService.new(git_user, gl_wiki.repository).with_branch(
-          @wiki.ref,
-          start_branch_name: @wiki.ref
-        ) do |start_commit|
-          super(false)
-        end
-
-        result[:newrev]
-      rescue Gitlab::Git::PreReceiveError => e
-        message = "Custom Hook failed: #{e.message}"
-        raise Gitlab::Git::Wiki::OperationError, message
-      end
-
-      private
-
-      # TODO: Remove after 10.8
-      def allowed_to_run_hooks?
-        @options[:user_id] != 0 && @options[:username].present?
-      end
-
-      def git_user
-        @git_user ||= Gitlab::Git::User.new(@options[:username],
-                                            @options[:name],
-                                            @options[:email],
-                                            gitlab_id)
-      end
-
-      def gitlab_id
-        Gitlab::GlId.gl_id_from_id_value(@options[:user_id])
-      end
-    end
-  end
-end

lib/gitlab/git/diff.rb

-# Gitaly note: JV: needs RPC for Gitlab::Git::Diff.between.
-
-# Gitlab::Git::Diff is a wrapper around native Rugged::Diff object
 module Gitlab
   module Git
     class Diff
@@ -52,20 +49,31 @@ module Gitlab
           repo.diff(common_commit, head, actual_options, *paths)
         end
 
-        # Return a copy of the +options+ hash containing only keys that can be
-        # passed to Rugged.  Allowed options are:
+        # Return a copy of the +options+ hash containing only recognized keys.
+        # Allowed options are:
         #
         #  :ignore_whitespace_change ::
         #    If true, changes in amount of whitespace will be ignored.
         #
-        #  :disable_pathspec_match ::
-        #    If true, the given +*paths+ will be applied as exact matches,
-        #    instead of as fnmatch patterns.
+        #  :max_files ::
+        #    Limit how many files will patches be allowed for before collapsing
+        #
+        #  :max_lines ::
+        #    Limit how many patch lines (across all files) will be allowed for
+        #    before collapsing
         #
+        #  :limits ::
+        #    A hash with additional limits to check before collapsing patches.
+        #    Allowed keys are: `max_bytes`, `safe_max_files`, `safe_max_lines`
+        #    and `safe_max_bytes`
+        #
+        #  :expanded ::
+        #    If true, patch raw data will not be included in the diff after
+        #    `max_files`, `max_lines` or any of the limits in `limits` are
+        #    exceeded
         def filter_diff_options(options, default_options = {})
-          allowed_options = [:ignore_whitespace_change,
-                             :disable_pathspec_match, :paths,
-                             :max_files, :max_lines, :limits, :expanded]
+          allowed_options = [:ignore_whitespace_change, :max_files, :max_lines,
+                             :limits, :expanded]
 
           if default_options
             actual_defaults = default_options.dup
@@ -93,7 +101,7 @@ module Gitlab
         #
         # "Binary files a/file/path and b/file/path differ\n"
         # This is used when we detect that a diff is binary
-        # using CharlockHolmes when Rugged treats it as text.
+        # using CharlockHolmes.
         def binary_message(old_path, new_path)
           "Binary files #{old_path} and #{new_path} differ\n"
         end
@@ -106,8 +114,6 @@ module Gitlab
         when Hash
           init_from_hash(raw_diff)
           prune_diff_if_eligible
-        when Rugged::Patch, Rugged::Diff::Delta
-          init_from_rugged(raw_diff)
         when Gitlab::GitalyClient::Diff
           init_from_gitaly(raw_diff)
           prune_diff_if_eligible
@@ -184,31 +190,6 @@ module Gitlab
 
       private
 
-      def init_from_rugged(rugged)
-        if rugged.is_a?(Rugged::Patch)
-          init_from_rugged_patch(rugged)
-          d = rugged.delta
-        else
-          d = rugged
-        end
-
-        @new_path = encode!(d.new_file[:path])
-        @old_path = encode!(d.old_file[:path])
-        @a_mode = d.old_file[:mode].to_s(8)
-        @b_mode = d.new_file[:mode].to_s(8)
-        @new_file = d.added?
-        @renamed_file = d.renamed?
-        @deleted_file = d.deleted?
-      end
-
-      def init_from_rugged_patch(patch)
-        # Don't bother initializing diffs that are too large. If a diff is
-        # binary we're not going to display anything so we skip the size check.
-        return if !patch.delta.binary? && prune_large_patch(patch)
-
-        @diff = encode!(strip_diff_headers(patch.to_s))
-      end
-
       def init_from_hash(hash)
         raw_diff = hash.symbolize_keys
 
@@ -262,23 +243,6 @@ module Gitlab
 
         false
       end
-
-      # Strip out the information at the beginning of the patch's text to match
-      # Grit's output
-      def strip_diff_headers(diff_text)
-        # Delete everything up to the first line that starts with '---' or
-        # 'Binary'
-        diff_text.sub!(/\A.*?^(---|Binary)/m, '\1')
-
-        if diff_text.start_with?('---', 'Binary')
-          diff_text
-        else
-          # If the diff_text did not contain a line starting with '---' or
-          # 'Binary', return the empty string. No idea why; we are just
-          # preserving behavior from before the refactor.
-          ''
-        end
-      end
     end
   end
 end

lib/gitlab/git/gitlab_projects.rb

-module Gitlab
-  module Git
-    class GitlabProjects
-      include Gitlab::Git::Popen
-      include Gitlab::Utils::StrongMemoize
-
-      # Name of shard where repositories are stored.
-      # Example: nfs-file06
-      attr_reader :shard_name
-
-      # Relative path is a directory name for repository with .git at the end.
-      # Example: gitlab-org/gitlab-test.git
-      attr_reader :repository_relative_path
-
-      # This is the path at which the gitlab-shell hooks directory can be found.
-      # It's essential for integration between git and GitLab proper. All new
-      # repositories should have their hooks directory symlinked here.
-      attr_reader :global_hooks_path
-
-      attr_reader :logger
-
-      def initialize(shard_name, repository_relative_path, global_hooks_path:, logger:)
-        @shard_name = shard_name
-        @repository_relative_path = repository_relative_path
-
-        @logger = logger
-        @global_hooks_path = global_hooks_path
-        @output = StringIO.new
-      end
-
-      def output
-        io = @output.dup
-        io.rewind
-        io.read
-      end
-
-      # Absolute path to the repository.
-      # Example: /home/git/repositorities/gitlab-org/gitlab-test.git
-      # Probably will be removed when we fully migrate to Gitaly, part of
-      # https://gitlab.com/gitlab-org/gitaly/issues/1124.
-      def repository_absolute_path
-        strong_memoize(:repository_absolute_path) do
-          File.join(shard_path, repository_relative_path)
-        end
-      end
-
-      def shard_path
-        strong_memoize(:shard_path) do
-          Gitlab.config.repositories.storages.fetch(shard_name).legacy_disk_path
-        end
-      end
-
-      # Import project via git clone --bare
-      # URL must be publicly cloneable
-      def import_project(source, timeout)
-        git_import_repository(source, timeout)
-      end
-
-      def fork_repository(new_shard_name, new_repository_relative_path)
-        git_fork_repository(new_shard_name, new_repository_relative_path)
-      end
-
-      def fetch_remote(name, timeout, force:, tags:, ssh_key: nil, known_hosts: nil, prune: true)
-        logger.info "Fetching remote #{name} for repository #{repository_absolute_path}."
-        cmd = fetch_remote_command(name, tags, prune, force)
-
-        setup_ssh_auth(ssh_key, known_hosts) do |env|
-          run_with_timeout(cmd, timeout, repository_absolute_path, env).tap do |success|
-            unless success
-              logger.error "Fetching remote #{name} for repository #{repository_absolute_path} failed."
-            end
-          end
-        end
-      end
-
-      def push_branches(remote_name, timeout, force, branch_names)
-        logger.info "Pushing branches from #{repository_absolute_path} to remote #{remote_name}: #{branch_names}"
-        cmd = %W(#{Gitlab.config.git.bin_path} push)
-        cmd << '--force' if force
-        cmd += %W(-- #{remote_name}).concat(branch_names)
-
-        success = run_with_timeout(cmd, timeout, repository_absolute_path)
-
-        unless success
-          logger.error("Pushing branches to remote #{remote_name} failed.")
-        end
-
-        success
-      end
-
-      def delete_remote_branches(remote_name, branch_names)
-        branches = branch_names.map { |branch_name| ":#{branch_name}" }
-
-        logger.info "Pushing deleted branches from #{repository_absolute_path} to remote #{remote_name}: #{branch_names}"
-        cmd = %W(#{Gitlab.config.git.bin_path} push -- #{remote_name}).concat(branches)
-
-        success = run(cmd, repository_absolute_path)
-
-        unless success
-          logger.error("Pushing deleted branches to remote #{remote_name} failed.")
-        end
-
-        success
-      end
-
-      protected
-
-      def run(*args)
-        output, exitstatus = popen(*args)
-        @output << output
-
-        exitstatus&.zero?
-      end
-
-      def run_with_timeout(*args)
-        output, exitstatus = popen_with_timeout(*args)
-        @output << output
-
-        exitstatus&.zero?
-      rescue Timeout::Error
-        @output.puts('Timed out')
-
-        false
-      end
-
-      def mask_password_in_url(url)
-        result = URI(url)
-        result.password = "*****" unless result.password.nil?
-        result.user = "*****" unless result.user.nil? # it's needed for oauth access_token
-        result
-      rescue
-        url
-      end
-
-      def remove_origin_in_repo
-        cmd = %W(#{Gitlab.config.git.bin_path} remote rm origin)
-        run(cmd, repository_absolute_path)
-      end
-
-      # Builds a small shell script that can be used to execute SSH with a set of
-      # custom options.
-      #
-      # Options are expanded as `'-oKey="Value"'`, so SSH will correctly interpret
-      # paths with spaces in them. We trust the user not to embed single or double
-      # quotes in the key or value.
-      def custom_ssh_script(options = {})
-        args = options.map { |k, v| %Q{'-o#{k}="#{v}"'} }.join(' ')
-
-        [
-          "#!/bin/sh",
-          "exec ssh #{args} \"$@\""
-        ].join("\n")
-      end
-
-      # Known hosts data and private keys can be passed to gitlab-shell in the
-      # environment. If present, this method puts them into temporary files, writes
-      # a script that can substitute as `ssh`, setting the options to respect those
-      # files, and yields: { "GIT_SSH" => "/tmp/myScript" }
-      def setup_ssh_auth(key, known_hosts)
-        options = {}
-
-        if key
-          key_file = Tempfile.new('gitlab-shell-key-file')
-          key_file.chmod(0o400)
-          key_file.write(key)
-          key_file.close
-
-          options['IdentityFile'] = key_file.path
-          options['IdentitiesOnly'] = 'yes'
-        end
-
-        if known_hosts
-          known_hosts_file = Tempfile.new('gitlab-shell-known-hosts')
-          known_hosts_file.chmod(0o400)
-          known_hosts_file.write(known_hosts)
-          known_hosts_file.close
-
-          options['StrictHostKeyChecking'] = 'yes'
-          options['UserKnownHostsFile'] = known_hosts_file.path
-        end
-
-        return yield({}) if options.empty?
-
-        script = Tempfile.new('gitlab-shell-ssh-wrapper')
-        script.chmod(0o755)
-        script.write(custom_ssh_script(options))
-        script.close
-
-        yield('GIT_SSH' => script.path)
-      ensure
-        key_file&.close!
-        known_hosts_file&.close!
-        script&.close!
-      end
-
-      private
-
-      def fetch_remote_command(name, tags, prune, force)
-        %W(#{Gitlab.config.git.bin_path} fetch #{name} --quiet).tap do |cmd|
-          cmd << '--prune' if prune
-          cmd << '--force' if force
-          cmd << (tags ? '--tags' : '--no-tags')
-        end
-      end
-
-      def git_import_repository(source, timeout)
-        # Skip import if repo already exists
-        return false if File.exist?(repository_absolute_path)
-
-        masked_source = mask_password_in_url(source)
-
-        logger.info "Importing project from <#{masked_source}> to <#{repository_absolute_path}>."
-        cmd = %W(#{Gitlab.config.git.bin_path} clone --bare -- #{source} #{repository_absolute_path})
-
-        success = run_with_timeout(cmd, timeout, nil)
-
-        unless success
-          logger.error("Importing project from <#{masked_source}> to <#{repository_absolute_path}> failed.")
-          FileUtils.rm_rf(repository_absolute_path)
-          return false
-        end
-
-        Gitlab::Git::Repository.create_hooks(repository_absolute_path, global_hooks_path)
-
-        # The project was imported successfully.
-        # Remove the origin URL since it may contain password.
-        remove_origin_in_repo
-
-        true
-      end
-
-      def git_fork_repository(new_shard_name, new_repository_relative_path)
-        from_path = repository_absolute_path
-        new_shard_path = Gitlab.config.repositories.storages.fetch(new_shard_name).legacy_disk_path
-        to_path = File.join(new_shard_path, new_repository_relative_path)
-
-        # The repository cannot already exist
-        if File.exist?(to_path)
-          logger.error "fork-repository failed: destination repository <#{to_path}> already exists."
-          return false
-        end
-
-        # Ensure the namepsace / hashed storage directory exists
-        FileUtils.mkdir_p(File.dirname(to_path), mode: 0770)
-
-        logger.info "Forking repository from <#{from_path}> to <#{to_path}>."
-        cmd = %W(#{Gitlab.config.git.bin_path} clone --bare --no-local -- #{from_path} #{to_path})
-
-        run(cmd, nil) && Gitlab::Git::Repository.create_hooks(to_path, global_hooks_path)
-      end
-    end
-  end
-end

lib/gitlab/git/hook.rb

-# Gitaly note: JV: looks like this is only used by Gitlab::Git::HooksService in
-# app/services. We shouldn't bother migrating this until we know how
-# Gitlab::Git::HooksService will be migrated.
-
-module Gitlab
-  module Git
-    class Hook
-      GL_PROTOCOL = 'web'.freeze
-      attr_reader :name, :path, :repository
-
-      def initialize(name, repository)
-        @name = name
-        @repository = repository
-        @path = File.join(repo_path, 'hooks', name)
-      end
-
-      def repo_path
-        repository.path
-      end
-
-      def exists?
-        File.exist?(path)
-      end
-
-      def trigger(gl_id, gl_username, oldrev, newrev, ref)
-        return [true, nil] unless exists?
-
-        Bundler.with_clean_env do
-          case name
-          when "pre-receive", "post-receive"
-            call_receive_hook(gl_id, gl_username, oldrev, newrev, ref)
-          when "update"
-            call_update_hook(gl_id, gl_username, oldrev, newrev, ref)
-          end
-        end
-      end
-
-      private
-
-      def call_receive_hook(gl_id, gl_username, oldrev, newrev, ref)
-        changes = [oldrev, newrev, ref].join(" ")
-
-        exit_status = false
-        exit_message = nil
-
-        vars = {
-          'GL_ID' => gl_id,
-          'GL_USERNAME' => gl_username,
-          'PWD' => repo_path,
-          'GL_PROTOCOL' => GL_PROTOCOL,
-          'GL_REPOSITORY' => repository.gl_repository
-        }
-
-        options = {
-          chdir: repo_path
-        }
-
-        Open3.popen3(vars, path, options) do |stdin, stdout, stderr, wait_thr|
-          exit_status = true
-          stdin.sync = true
-
-          # in git, pre- and post- receive hooks may just exit without
-          # reading stdin. We catch the exception to avoid a broken pipe
-          # warning
-          begin
-            # inject all the changes as stdin to the hook
-            changes.lines do |line|
-              stdin.puts line
-            end
-          rescue Errno::EPIPE
-          end
-
-          stdin.close
-
-          unless wait_thr.value == 0
-            exit_status = false
-            exit_message = retrieve_error_message(stderr, stdout)
-          end
-        end
-
-        [exit_status, exit_message]
-      end
-
-      def call_update_hook(gl_id, gl_username, oldrev, newrev, ref)
-        env = {
-          'GL_ID' => gl_id,
-          'GL_USERNAME' => gl_username,
-          'PWD' => repo_path
-        }
-
-        options = {
-          chdir: repo_path
-        }
-
-        args = [ref, oldrev, newrev]
-
-        stdout, stderr, status = Open3.capture3(env, path, *args, options)
-        [status.success?, stderr.presence || stdout]
-      end
-
-      def retrieve_error_message(stderr, stdout)
-        err_message = stderr.read
-        err_message = err_message.blank? ? stdout.read : err_message
-        err_message
-      end
-    end
-  end
-end

lib/gitlab/git/hooks_service.rb

-module Gitlab
-  module Git
-    class HooksService
-      attr_accessor :oldrev, :newrev, :ref
-
-      def execute(pusher, repository, oldrev, newrev, ref)
-        @repository  = repository
-        @gl_id       = pusher.gl_id
-        @gl_username = pusher.username
-        @oldrev      = oldrev
-        @newrev      = newrev
-        @ref         = ref
-
-        %w(pre-receive update).each do |hook_name|
-          status, message = run_hook(hook_name)
-
-          unless status
-            raise PreReceiveError, message
-          end
-        end
-
-        yield(self).tap do
-          run_hook('post-receive')
-        end
-      end
-
-      private
-
-      def run_hook(name)
-        hook = Gitlab::Git::Hook.new(name, @repository)
-        hook.trigger(@gl_id, @gl_username, oldrev, newrev, ref)
-      end
-    end
-  end
-end

lib/gitlab/git/index.rb

-# Gitaly note: JV: When the time comes I think we will want to copy this
-# class into Gitaly. None of its methods look like they should be RPC's.
-# The RPC's will be at a higher level.
-
 module Gitlab
   module Git
     class Index
       IndexError = Class.new(StandardError)
-
-      DEFAULT_MODE = 0o100644
-
-      ACTIONS = %w(create create_dir update move delete).freeze
-      ACTION_OPTIONS = %i(file_path previous_path content encoding).freeze
-
-      attr_reader :repository, :raw_index
-
-      def initialize(repository)
-        @repository = repository
-        @raw_index = repository.rugged.index
-      end
-
-      delegate :read_tree, :get, to: :raw_index
-
-      def apply(action, options)
-        validate_action!(action)
-        public_send(action, options.slice(*ACTION_OPTIONS)) # rubocop:disable GitlabSecurity/PublicSend
-      end
-
-      def write_tree
-        raw_index.write_tree(repository.rugged)
-      end
-
-      def dir_exists?(path)
-        raw_index.find { |entry| entry[:path].start_with?("#{path}/") }
-      end
-
-      def create(options)
-        options = normalize_options(options)
-
-        if get(options[:file_path])
-          raise IndexError, "A file with this name already exists"
-        end
-
-        add_blob(options)
-      end
-
-      def create_dir(options)
-        options = normalize_options(options)
-
-        if get(options[:file_path])
-          raise IndexError, "A file with this name already exists"
-        end
-
-        if dir_exists?(options[:file_path])
-          raise IndexError, "A directory with this name already exists"
-        end
-
-        options = options.dup
-        options[:file_path] += '/.gitkeep'
-        options[:content] = ''
-
-        add_blob(options)
-      end
-
-      def update(options)
-        options = normalize_options(options)
-
-        file_entry = get(options[:file_path])
-        unless file_entry
-          raise IndexError, "A file with this name doesn't exist"
-        end
-
-        add_blob(options, mode: file_entry[:mode])
-      end
-
-      def move(options)
-        options = normalize_options(options)
-
-        file_entry = get(options[:previous_path])
-        unless file_entry
-          raise IndexError, "A file with this name doesn't exist"
-        end
-
-        if get(options[:file_path])
-          raise IndexError, "A file with this name already exists"
-        end
-
-        raw_index.remove(options[:previous_path])
-
-        add_blob(options, mode: file_entry[:mode])
-      end
-
-      def delete(options)
-        options = normalize_options(options)
-
-        unless get(options[:file_path])
-          raise IndexError, "A file with this name doesn't exist"
-        end
-
-        raw_index.remove(options[:file_path])
-      end
-
-      private
-
-      def normalize_options(options)
-        options = options.dup
-        options[:file_path] = normalize_path(options[:file_path]) if options[:file_path]
-        options[:previous_path] = normalize_path(options[:previous_path]) if options[:previous_path]
-        options
-      end
-
-      def normalize_path(path)
-        unless path
-          raise IndexError, "You must provide a file path"
-        end
-
-        pathname = Gitlab::Git::PathHelper.normalize_path(path.dup)
-
-        pathname.each_filename do |segment|
-          if segment == '..'
-            raise IndexError, 'Path cannot include directory traversal'
-          end
-        end
-
-        pathname.to_s
-      end
-
-      def add_blob(options, mode: nil)
-        content = options[:content]
-        unless content
-          raise IndexError, "You must provide content"
-        end
-
-        content = Base64.decode64(content) if options[:encoding] == 'base64'
-
-        detect = CharlockHolmes::EncodingDetector.new.detect(content)
-        unless detect && detect[:type] == :binary
-          # When writing to the repo directly as we are doing here,
-          # the `core.autocrlf` config isn't taken into account.
-          content.gsub!("\r\n", "\n") if repository.autocrlf
-        end
-
-        oid = repository.rugged.write(content, :blob)
-
-        raw_index.add(path: options[:file_path], oid: oid, mode: mode || DEFAULT_MODE)
-      rescue Rugged::IndexError => e
-        raise IndexError, e.message
-      end
-
-      def validate_action!(action)
-        unless ACTIONS.include?(action.to_s)
-          raise ArgumentError, "Unknown action '#{action}'"
-        end
-      end
     end
   end
 end

lib/gitlab/git/operation_service.rb

 module Gitlab
   module Git
     class OperationService
-      include Gitlab::Git::Popen
-
       BranchUpdate = Struct.new(:newrev, :repo_created, :branch_created) do
         alias_method :repo_created?, :repo_created
         alias_method :branch_created?, :branch_created
@@ -17,177 +15,6 @@ module Gitlab
           )
         end
       end
-
-      attr_reader :user, :repository
-
-      def initialize(user, new_repository)
-        if user
-          user = Gitlab::Git::User.from_gitlab(user) unless user.respond_to?(:gl_id)
-          @user = user
-        end
-
-        # Refactoring aid
-        Gitlab::Git.check_namespace!(new_repository)
-
-        @repository = new_repository
-      end
-
-      def add_branch(branch_name, newrev)
-        ref = Gitlab::Git::BRANCH_REF_PREFIX + branch_name
-        oldrev = Gitlab::Git::BLANK_SHA
-
-        update_ref_in_hooks(ref, newrev, oldrev)
-      end
-
-      def rm_branch(branch)
-        ref = Gitlab::Git::BRANCH_REF_PREFIX + branch.name
-        oldrev = branch.target
-        newrev = Gitlab::Git::BLANK_SHA
-
-        update_ref_in_hooks(ref, newrev, oldrev)
-      end
-
-      def add_tag(tag_name, newrev, options = {})
-        ref = Gitlab::Git::TAG_REF_PREFIX + tag_name
-        oldrev = Gitlab::Git::BLANK_SHA
-
-        with_hooks(ref, newrev, oldrev) do |service|
-          # We want to pass the OID of the tag object to the hooks. For an
-          # annotated tag we don't know that OID until after the tag object
-          # (raw_tag) is created in the repository. That is why we have to
-          # update the value after creating the tag object. Only the
-          # "post-receive" hook will receive the correct value in this case.
-          raw_tag = repository.rugged.tags.create(tag_name, newrev, options)
-          service.newrev = raw_tag.target_id
-        end
-      end
-
-      def rm_tag(tag)
-        ref = Gitlab::Git::TAG_REF_PREFIX + tag.name
-        oldrev = tag.target
-        newrev = Gitlab::Git::BLANK_SHA
-
-        update_ref_in_hooks(ref, newrev, oldrev) do
-          repository.rugged.tags.delete(tag_name)
-        end
-      end
-
-      # Whenever `start_branch_name` is passed, if `branch_name` doesn't exist,
-      # it would be created from `start_branch_name`.
-      # If `start_repository` is passed, and the branch doesn't exist,
-      # it would try to find the commits from it instead of current repository.
-      def with_branch(
-        branch_name,
-        start_branch_name: nil,
-        start_repository: repository,
-        &block)
-
-        Gitlab::Git.check_namespace!(start_repository)
-        start_repository = RemoteRepository.new(start_repository) unless start_repository.is_a?(RemoteRepository)
-
-        start_branch_name = nil if start_repository.empty?
-
-        if start_branch_name && !start_repository.branch_exists?(start_branch_name)
-          raise ArgumentError, "Cannot find branch #{start_branch_name} in #{start_repository.relative_path}"
-        end
-
-        update_branch_with_hooks(branch_name) do
-          repository.with_repo_branch_commit(
-            start_repository,
-            start_branch_name || branch_name,
-            &block)
-        end
-      end
-
-      def update_branch(branch_name, newrev, oldrev)
-        ref = Gitlab::Git::BRANCH_REF_PREFIX + branch_name
-        update_ref_in_hooks(ref, newrev, oldrev)
-      end
-
-      private
-
-      # Returns [newrev, should_run_after_create, should_run_after_create_branch]
-      def update_branch_with_hooks(branch_name)
-        update_autocrlf_option
-
-        was_empty = repository.empty?
-
-        # Make commit
-        newrev = yield
-
-        unless newrev
-          raise Gitlab::Git::CommitError.new('Failed to create commit')
-        end
-
-        branch = repository.find_branch(branch_name)
-        oldrev = find_oldrev_from_branch(newrev, branch)
-
-        ref = Gitlab::Git::BRANCH_REF_PREFIX + branch_name
-        update_ref_in_hooks(ref, newrev, oldrev)
-
-        BranchUpdate.new(newrev, was_empty, was_empty || Gitlab::Git.blank_ref?(oldrev))
-      end
-
-      def find_oldrev_from_branch(newrev, branch)
-        return Gitlab::Git::BLANK_SHA unless branch
-
-        oldrev = branch.target
-
-        merge_base = repository.merge_base(newrev, branch.target)
-        raise Gitlab::Git::Repository::InvalidRef unless merge_base
-
-        if oldrev == merge_base
-          oldrev
-        else
-          raise Gitlab::Git::CommitError.new('Branch diverged')
-        end
-      end
-
-      def update_ref_in_hooks(ref, newrev, oldrev)
-        with_hooks(ref, newrev, oldrev) do
-          update_ref(ref, newrev, oldrev)
-        end
-      end
-
-      def with_hooks(ref, newrev, oldrev)
-        Gitlab::Git::HooksService.new.execute(
-          user,
-          repository,
-          oldrev,
-          newrev,
-          ref) do |service|
-
-          yield(service)
-        end
-      end
-
-      # Gitaly note: JV: wait with migrating #update_ref until we know how to migrate its call sites.
-      def update_ref(ref, newrev, oldrev)
-        # We use 'git update-ref' because libgit2/rugged currently does not
-        # offer 'compare and swap' ref updates. Without compare-and-swap we can
-        # (and have!) accidentally reset the ref to an earlier state, clobbering
-        # commits. See also https://github.com/libgit2/libgit2/issues/1534.
-        command = %W[#{Gitlab.config.git.bin_path} update-ref --stdin -z]
-
-        output, status = popen(
-          command,
-          repository.path) do |stdin|
-          stdin.write("update #{ref}\x00#{newrev}\x00#{oldrev}\x00")
-        end
-
-        unless status.zero?
-          Gitlab::GitLogger.error("'git update-ref' in #{repository.path}: #{output}")
-          raise Gitlab::Git::CommitError.new(
-            "Could not update branch #{Gitlab::Git.branch_name(ref)}." \
-            " Please refresh and try again.")
-        end
-      end
-
-      def update_autocrlf_option
-        if repository.autocrlf != :input
-          repository.autocrlf = :input
-        end
-      end
     end
   end
 end

lib/gitlab/git/popen.rb

-# Gitaly note: JV: no RPC's here.
-
-require 'open3'
-
-module Gitlab
-  module Git
-    module Popen
-      FAST_GIT_PROCESS_TIMEOUT = 15.seconds
-
-      def popen(cmd, path, vars = {}, lazy_block: nil)
-        unless cmd.is_a?(Array)
-          raise "System commands must be given as an array of strings"
-        end
-
-        path ||= Dir.pwd
-        vars['PWD'] = path
-        options = { chdir: path }
-
-        cmd_output = ""
-        cmd_status = 0
-        Open3.popen3(vars, *cmd, options) do |stdin, stdout, stderr, wait_thr|
-          stdout.set_encoding(Encoding::ASCII_8BIT)
-
-          # stderr and stdout pipes can block if stderr/stdout aren't drained: https://bugs.ruby-lang.org/issues/9082
-          # Mimic what Ruby does with capture3: https://github.com/ruby/ruby/blob/1ec544695fa02d714180ef9c34e755027b6a2103/lib/open3.rb#L257-L273
-          err_reader = Thread.new { stderr.read }
-
-          yield(stdin) if block_given?
-          stdin.close
-
-          if lazy_block
-            cmd_output = lazy_block.call(stdout.lazy)
-            cmd_status = 0
-            break
-          else
-            cmd_output << stdout.read
-          end
-
-          cmd_output << err_reader.value
-          cmd_status = wait_thr.value.exitstatus
-        end
-
-        [cmd_output, cmd_status]
-      end
-
-      def popen_with_timeout(cmd, timeout, path, vars = {})
-        unless cmd.is_a?(Array)
-          raise "System commands must be given as an array of strings"
-        end
-
-        path ||= Dir.pwd
-        vars['PWD'] = path
-
-        unless File.directory?(path)
-          FileUtils.mkdir_p(path)
-        end
-
-        rout, wout = IO.pipe
-        rerr, werr = IO.pipe
-
-        pid = Process.spawn(vars, *cmd, out: wout, err: werr, chdir: path, pgroup: true)
-        # stderr and stdout pipes can block if stderr/stdout aren't drained: https://bugs.ruby-lang.org/issues/9082
-        # Mimic what Ruby does with capture3: https://github.com/ruby/ruby/blob/1ec544695fa02d714180ef9c34e755027b6a2103/lib/open3.rb#L257-L273
-        out_reader = Thread.new { rout.read }
-        err_reader = Thread.new { rerr.read }
-
-        begin
-          # close write ends so we could read them
-          wout.close
-          werr.close
-
-          status = process_wait_with_timeout(pid, timeout)
-
-          cmd_output = out_reader.value
-          cmd_output << err_reader.value # Copying the behaviour of `popen` which merges stderr into output
-
-          [cmd_output, status.exitstatus]
-        rescue Timeout::Error => e
-          kill_process_group_for_pid(pid)
-
-          raise e
-        ensure
-          wout.close unless wout.closed?
-          werr.close unless werr.closed?
-
-          rout.close
-          rerr.close
-        end
-      end
-
-      def process_wait_with_timeout(pid, timeout)
-        deadline = timeout.seconds.from_now
-        wait_time = 0.01
-
-        while deadline > Time.now
-          sleep(wait_time)
-          _, status = Process.wait2(pid, Process::WNOHANG)
-
-          return status unless status.nil?
-        end
-
-        raise Timeout::Error, "Timeout waiting for process ##{pid}"
-      end
-
-      def kill_process_group_for_pid(pid)
-        Process.kill("KILL", -pid)
-        Process.wait(pid)
-      rescue Errno::ESRCH
-      end
-    end
-  end
-end

lib/gitlab/git/tree.rb

@@ -50,51 +50,6 @@ module Gitlab
             entry[:oid]
           end
         end
-
-        def tree_entries_from_rugged(repository, sha, path, recursive)
-          current_path_entries = get_tree_entries_from_rugged(repository, sha, path)
-          ordered_entries = []
-
-          current_path_entries.each do |entry|
-            ordered_entries << entry
-
-            if recursive && entry.dir?
-              ordered_entries.concat(tree_entries_from_rugged(repository, sha, entry.path, true))
-            end
-          end
-
-          ordered_entries
-        end
-
-        def get_tree_entries_from_rugged(repository, sha, path)
-          commit = repository.lookup(sha)
-          root_tree = commit.tree
-
-          tree = if path
-                   id = find_id_by_path(repository, root_tree.oid, path)
-                   if id
-                     repository.lookup(id)
-                   else
-                     []
-                   end
-                 else
-                   root_tree
-                 end
-
-          tree.map do |entry|
-            new(
-              id: entry[:oid],
-              root_id: root_tree.oid,
-              name: entry[:name],
-              type: entry[:type],
-              mode: entry[:filemode].to_s(8),
-              path: path ? File.join(path, entry[:name]) : entry[:name],
-              commit_id: sha
-            )
-          end
-        rescue Rugged::ReferenceError
-          []
-        end
       end
 
       def initialize(options)

lib/gitlab/git/version.rb

 module Gitlab
   module Git
     module Version
-      extend Gitlab::Git::Popen
-
       def self.git_version
         Gitlab::VersionInfo.parse(Gitaly::Server.all.first.git_binary_version)
       end

lib/gitlab/git/wiki.rb

@@ -163,20 +163,6 @@ module Gitlab
           Gitlab::Git::WikiPage.new(wiki_page, version)
         end
       end
-
-      def committer_with_hooks(commit_details)
-        Gitlab::Git::CommitterWithHooks.new(self, commit_details.to_h)
-      end
-
-      def with_committer_with_hooks(commit_details, &block)
-        committer = committer_with_hooks(commit_details)
-
-        yield committer
-
-        committer.commit
-
-        nil
-      end
     end
   end
 end

lib/gitlab/shell.rb

@@ -368,15 +368,6 @@ module Gitlab
 
     private
 
-    def gitlab_projects(shard_name, disk_path)
-      Gitlab::Git::GitlabProjects.new(
-        shard_name,
-        disk_path,
-        global_hooks_path: Gitlab.config.gitlab_shell.hooks_path,
-        logger: Rails.logger
-      )
-    end
-
     def gitlab_shell_fast_execute(cmd)
       output, status = gitlab_shell_fast_execute_helper(cmd)
 

spec/controllers/projects/jobs_controller_spec.rb

@@ -208,6 +208,51 @@ describe Projects::JobsController, :clean_gitlab_redis_shared_state do
       end
     end
 
+    context 'when requesting JSON job is triggered' do
+      let!(:merge_request) { create(:merge_request, source_project: project) }
+      let(:trigger) { create(:ci_trigger, project: project) }
+      let(:trigger_request) { create(:ci_trigger_request, pipeline: pipeline, trigger: trigger) }
+      let(:job) { create(:ci_build, pipeline: pipeline, trigger_request: trigger_request) }
+
+      before do
+        project.add_developer(user)
+        sign_in(user)
+
+        allow_any_instance_of(Ci::Build).to receive(:merge_request).and_return(merge_request)
+      end
+
+      context 'with no variables' do
+        before do
+          get_show(id: job.id, format: :json)
+        end
+
+        it 'exposes trigger information' do
+          expect(response).to have_gitlab_http_status(:ok)
+          expect(response).to match_response_schema('job/job_details')
+          expect(json_response['trigger']['short_token']).to eq 'toke'
+          expect(json_response['trigger']['variables'].length).to eq 0
+        end
+      end
+
+      context 'with variables' do
+        before do
+          create(:ci_pipeline_variable, pipeline: pipeline, key: :TRIGGER_KEY_1, value: 'TRIGGER_VALUE_1')
+
+          get_show(id: job.id, format: :json)
+        end
+
+        it 'exposes trigger information and variables' do
+          expect(response).to have_gitlab_http_status(:ok)
+          expect(response).to match_response_schema('job/job_details')
+          expect(json_response['trigger']['short_token']).to eq 'toke'
+          expect(json_response['trigger']['variables'].length).to eq 1
+          expect(json_response['trigger']['variables'].first['key']).to eq "TRIGGER_KEY_1"
+          expect(json_response['trigger']['variables'].first['value']).to eq "TRIGGER_VALUE_1"
+          expect(json_response['trigger']['variables'].first['public']).to eq false
+        end
+      end
+    end
+
     def get_show(**extra_params)
       params = {
         namespace_id: project.namespace.to_param,

spec/controllers/projects/merge_requests_controller_spec.rb

@@ -885,4 +885,18 @@ describe Projects::MergeRequestsController do
       end
     end
   end
+
+  describe 'GET edit' do
+    it 'responds successfully' do
+      get :edit, namespace_id: project.namespace, project_id: project, id: merge_request
+
+      expect(response).to have_gitlab_http_status(:success)
+    end
+
+    it 'assigns the noteable to make sure autocompletes work' do
+      get :edit, namespace_id: project.namespace, project_id: project, id: merge_request
+
+      expect(assigns(:noteable)).not_to be_nil
+    end
+  end
 end

spec/features/dashboard/groups_list_spec.rb

@@ -125,7 +125,7 @@ describe 'Dashboard Groups page', :js do
     end
 
     it 'loads results for next page' do
-      expect(page).to have_selector('.gl-pagination .page', count: 2)
+      expect(page).to have_selector('.gl-pagination .page-item a[role=menuitemradio]', count: 2)
 
       # Check first page
       expect(page).to have_content(group2.full_name)
@@ -134,7 +134,7 @@ describe 'Dashboard Groups page', :js do
       expect(page).not_to have_selector("#group-#{group.id}")
 
       # Go to next page
-      find(".gl-pagination .page:not(.active) a").click
+      find('.gl-pagination .page-item:not(.active) a[role=menuitemradio]').click
 
       wait_for_requests
 

spec/features/projects/import_export/import_file_spec.rb

@@ -2,6 +2,7 @@ require 'spec_helper'
 
 describe 'Import/Export - project import integration test', :js do
   include Select2Helper
+  include GitHelpers
 
   let(:user) { create(:user) }
   let(:file) { File.join(Rails.root, 'spec', 'features', 'projects', 'import_export', 'test_project_export.tar.gz') }
@@ -94,12 +95,6 @@ describe 'Import/Export - project import integration test', :js do
     wiki.repository.exists? && !wiki.repository.empty?
   end
 
-  def project_hook_exists?(project)
-    Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-      Gitlab::Git::Hook.new('post-receive', project.repository.raw_repository).exists?
-    end
-  end
-
   def click_import_project_tab
     find('#import-project-tab').click
   end

spec/finders/projects_finder_spec.rb

@@ -174,6 +174,13 @@ describe ProjectsFinder do
       end
     end
 
+    describe 'filter by without_deleted' do
+      let(:params) { { without_deleted: true } }
+      let!(:pending_delete_project) { create(:project, :public, pending_delete: true) }
+
+      it { is_expected.to match_array([public_project, internal_project]) }
+    end
+
     describe 'sorting' do
       let(:params) { { sort: 'name_asc' } }
 

spec/fixtures/api/schemas/job/job_details.json

 {
-  "allOf": [{ "$ref": "job.json" }],
+  "allOf": [
+    { "$ref": "job.json" }
+  ],
   "description": "An extension of job.json with more detailed information",
   "properties": {
     "artifact": { "$ref": "artifact.json" },
-    "terminal_path": { "type": "string" }
+    "terminal_path": { "type": "string" },
+    "trigger": { "$ref": "trigger.json" }
   }
 }

spec/fixtures/api/schemas/job/trigger.json

+{
+  "type": "object",
+  "required": [
+    "short_token",
+    "variables"
+  ],
+  "properties": {
+    "short_token": { "type": "string" },
+    "variables": {
+      "type": "array",
+      "items": {
+        "type": "object",
+        "required": [
+          "key",
+          "value",
+          "public"
+        ],
+        "properties": {
+          "key": { "type": "string" },
+          "value": { "type": "string" },
+          "public": { "type": "boolean" }
+        },
+        "additionalProperties": false
+      }
+    }
+  },
+  "additionalProperties": false
+}

spec/javascripts/groups/components/app_spec.js

@@ -24,6 +24,8 @@ const createComponent = (hideProjects = false) => {
   const store = new GroupsStore(false);
   const service = new GroupsService(mockEndpoint);
 
+  store.state.pageInfo = mockPageInfo;
+
   return new Component({
     propsData: {
       store,
@@ -484,7 +486,6 @@ describe('AppComponent', () => {
     it('should render groups tree', done => {
       vm.store.state.groups = [mockParentGroupItem];
       vm.isLoading = false;
-      vm.store.state.pageInfo = mockPageInfo;
       Vue.nextTick(() => {
         expect(vm.$el.querySelector('.groups-list-tree-container')).toBeDefined();
         done();

spec/javascripts/vue_shared/components/pagination_links_spec.js

+import Vue from 'vue';
+import PaginationLinks from '~/vue_shared/components/pagination_links.vue';
+import { s__ } from '~/locale';
+import mountComponent from '../../helpers/vue_mount_component_helper';
+
+describe('Pagination links component', () => {
+  const paginationLinksComponent = Vue.extend(PaginationLinks);
+  const change = page => page;
+  const pageInfo = {
+    page: 3,
+    perPage: 5,
+    total: 30,
+  };
+  const translations = {
+    firstText: s__('Pagination|« First'),
+    prevText: s__('Pagination|Prev'),
+    nextText: s__('Pagination|Next'),
+    lastText: s__('Pagination|Last »'),
+  };
+
+  let paginationLinks;
+  let glPagination;
+  let destinationComponent;
+
+  beforeEach(() => {
+    paginationLinks = mountComponent(
+      paginationLinksComponent,
+      {
+        change,
+        pageInfo,
+      },
+    );
+    [glPagination] = paginationLinks.$children;
+    [destinationComponent] = glPagination.$children;
+  });
+
+  afterEach(() => {
+    paginationLinks.$destroy();
+  });
+
+  it('should provide translated text to GitLab UI pagination', () => {
+    Object.entries(translations).forEach(entry =>
+      expect(
+        destinationComponent[entry[0]],
+      ).toBe(entry[1]),
+    );
+  });
+
+  it('should pass change to GitLab UI pagination', () => {
+    expect(
+      Object.is(glPagination.change, change),
+    ).toBe(true);
+  });
+
+  it('should pass page from pageInfo to GitLab UI pagination', () => {
+    expect(
+      destinationComponent.value,
+    ).toBe(pageInfo.page);
+  });
+
+  it('should pass per page from pageInfo to GitLab UI pagination', () => {
+    expect(
+      destinationComponent.perPage,
+    ).toBe(pageInfo.perPage);
+  });
+
+  it('should pass total items from pageInfo to GitLab UI pagination', () => {
+    expect(
+      destinationComponent.totalRows,
+    ).toBe(pageInfo.total);
+  });
+});

spec/lib/banzai/filter/markdown_filter_spec.rb

@@ -66,4 +66,21 @@ describe Banzai::Filter::MarkdownFilter do
       end
     end
   end
+
+  describe 'footnotes in tables' do
+    it 'processes footnotes in table cells' do
+      text = <<-MD.strip_heredoc
+      | Column1   |
+      | --------- |
+      | foot [^1] |
+
+      [^1]: a footnote
+      MD
+
+      result = filter(text)
+
+      expect(result).to include('<td>foot <sup')
+      expect(result).to include('<section class="footnotes">')
+    end
+  end
 end

spec/lib/gitlab/git/committer_with_hooks_spec.rb

-require 'spec_helper'
-
-describe Gitlab::Git::CommitterWithHooks, :seed_helper do
-  # TODO https://gitlab.com/gitlab-org/gitaly/issues/1234
-  skip 'needs to be moved to gitaly-ruby test suite' do
-    shared_examples 'calling wiki hooks' do
-      let(:project) { create(:project) }
-      let(:user) { project.owner }
-      let(:project_wiki) { ProjectWiki.new(project, user) }
-      let(:wiki) { project_wiki.wiki }
-      let(:options) do
-        {
-          id: user.id,
-          username: user.username,
-          name: user.name,
-          email: user.email,
-          message: 'commit message'
-        }
-      end
-
-      subject { described_class.new(wiki, options) }
-
-      before do
-        project_wiki.create_page('home', 'test content')
-      end
-
-      shared_examples 'failing pre-receive hook' do
-        before do
-          expect_any_instance_of(Gitlab::Git::HooksService).to receive(:run_hook).with('pre-receive').and_return([false, ''])
-          expect_any_instance_of(Gitlab::Git::HooksService).not_to receive(:run_hook).with('update')
-          expect_any_instance_of(Gitlab::Git::HooksService).not_to receive(:run_hook).with('post-receive')
-        end
-
-        it 'raises exception' do
-          expect { subject.commit }.to raise_error(Gitlab::Git::Wiki::OperationError)
-        end
-
-        it 'does not create a new commit inside the repository' do
-          current_rev = find_current_rev
-
-          expect { subject.commit }.to raise_error(Gitlab::Git::Wiki::OperationError)
-
-          expect(current_rev).to eq find_current_rev
-        end
-      end
-
-      shared_examples 'failing update hook' do
-        before do
-          expect_any_instance_of(Gitlab::Git::HooksService).to receive(:run_hook).with('pre-receive').and_return([true, ''])
-          expect_any_instance_of(Gitlab::Git::HooksService).to receive(:run_hook).with('update').and_return([false, ''])
-          expect_any_instance_of(Gitlab::Git::HooksService).not_to receive(:run_hook).with('post-receive')
-        end
-
-        it 'raises exception' do
-          expect { subject.commit }.to raise_error(Gitlab::Git::Wiki::OperationError)
-        end
-
-        it 'does not create a new commit inside the repository' do
-          current_rev = find_current_rev
-
-          expect { subject.commit }.to raise_error(Gitlab::Git::Wiki::OperationError)
-
-          expect(current_rev).to eq find_current_rev
-        end
-      end
-
-      shared_examples 'failing post-receive hook' do
-        before do
-          expect_any_instance_of(Gitlab::Git::HooksService).to receive(:run_hook).with('pre-receive').and_return([true, ''])
-          expect_any_instance_of(Gitlab::Git::HooksService).to receive(:run_hook).with('update').and_return([true, ''])
-          expect_any_instance_of(Gitlab::Git::HooksService).to receive(:run_hook).with('post-receive').and_return([false, ''])
-        end
-
-        it 'does not raise exception' do
-          expect { subject.commit }.not_to raise_error
-        end
-
-        it 'creates the commit' do
-          current_rev = find_current_rev
-
-          subject.commit
-
-          expect(current_rev).not_to eq find_current_rev
-        end
-      end
-
-      shared_examples 'when hooks call succceeds' do
-        let(:hook) { double(:hook) }
-
-        it 'calls the three hooks' do
-          expect(Gitlab::Git::Hook).to receive(:new).exactly(3).times.and_return(hook)
-          expect(hook).to receive(:trigger).exactly(3).times.and_return([true, nil])
-
-          subject.commit
-        end
-
-        it 'creates the commit' do
-          current_rev = find_current_rev
-
-          subject.commit
-
-          expect(current_rev).not_to eq find_current_rev
-        end
-      end
-
-      context 'when creating a page' do
-        before do
-          project_wiki.create_page('index', 'test content')
-        end
-
-        it_behaves_like 'failing pre-receive hook'
-        it_behaves_like 'failing update hook'
-        it_behaves_like 'failing post-receive hook'
-        it_behaves_like 'when hooks call succceeds'
-      end
-
-      context 'when updating a page' do
-        before do
-          project_wiki.update_page(find_page('home'), content: 'some other content', format: :markdown)
-        end
-
-        it_behaves_like 'failing pre-receive hook'
-        it_behaves_like 'failing update hook'
-        it_behaves_like 'failing post-receive hook'
-        it_behaves_like 'when hooks call succceeds'
-      end
-
-      context 'when deleting a page' do
-        before do
-          project_wiki.delete_page(find_page('home'))
-        end
-
-        it_behaves_like 'failing pre-receive hook'
-        it_behaves_like 'failing update hook'
-        it_behaves_like 'failing post-receive hook'
-        it_behaves_like 'when hooks call succceeds'
-      end
-
-      def find_current_rev
-        wiki.gollum_wiki.repo.commits.first&.sha
-      end
-
-      def find_page(name)
-        wiki.page(title: name)
-      end
-    end
-
-    context 'when Gitaly is enabled' do
-      it_behaves_like 'calling wiki hooks'
-    end
-
-    context 'when Gitaly is disabled', :disable_gitaly do
-      it_behaves_like 'calling wiki hooks'
-    end
-  end
-end

spec/lib/gitlab/git/diff_spec.rb

@@ -2,12 +2,24 @@ require "spec_helper"
 
 describe Gitlab::Git::Diff, :seed_helper do
   let(:repository) { Gitlab::Git::Repository.new('default', TEST_REPO_PATH, '') }
+  let(:gitaly_diff) do
+    Gitlab::GitalyClient::Diff.new(
+      from_path: '.gitmodules',
+      to_path: '.gitmodules',
+      old_mode: 0100644,
+      new_mode: 0100644,
+      from_id: '0792c58905eff3432b721f8c4a64363d8e28d9ae',
+      to_id: 'efd587ccb47caf5f31fc954edb21f0a713d9ecc3',
+      overflow_marker: false,
+      collapsed: false,
+      too_large: false,
+      patch: "@@ -4,3 +4,6 @@\n [submodule \"gitlab-shell\"]\n \tpath = gitlab-shell\n \turl = https://github.com/gitlabhq/gitlab-shell.git\n+[submodule \"gitlab-grack\"]\n+\tpath = gitlab-grack\n+\turl = https://gitlab.com/gitlab-org/gitlab-grack.git\n"
+    )
+  end
 
   before do
     @raw_diff_hash = {
       diff: <<EOT.gsub(/^ {8}/, "").sub(/\n$/, ""),
-        --- a/.gitmodules
-        +++ b/.gitmodules
         @@ -4,3 +4,6 @@
          [submodule "gitlab-shell"]
          \tpath = gitlab-shell
@@ -26,12 +38,6 @@ EOT
       deleted_file: false,
       too_large: false
     }
-
-    # TODO use a Gitaly diff object instead
-    @rugged_diff = Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-      repository.rugged.diff("5937ac0a7beb003549fc5fd26fc247adbce4a52e^", "5937ac0a7beb003549fc5fd26fc247adbce4a52e", paths:
-                                              [".gitmodules"]).patches.first
-    end
   end
 
   describe '.new' do
@@ -60,7 +66,7 @@ EOT
 
     context 'using a Rugged::Patch' do
       context 'with a small diff' do
-        let(:diff) { described_class.new(@rugged_diff) }
+        let(:diff) { described_class.new(gitaly_diff) }
 
         it 'initializes the diff' do
           expect(diff.to_hash).to eq(@raw_diff_hash)
@@ -73,10 +79,8 @@ EOT
 
       context 'using a diff that is too large' do
         it 'prunes the diff' do
-          expect_any_instance_of(String).to receive(:bytesize)
-            .and_return(1024 * 1024 * 1024)
-
-          diff = described_class.new(@rugged_diff)
+          gitaly_diff.too_large = true
+          diff = described_class.new(gitaly_diff)
 
           expect(diff.diff).to be_empty
           expect(diff).to be_too_large
@@ -84,33 +88,15 @@ EOT
       end
 
       context 'using a collapsable diff that is too large' do
-        before do
-          # The patch total size is 200, with lines between 21 and 54.
-          # This is a quick-and-dirty way to test this. Ideally, a new patch is
-          # added to the test repo with a size that falls between the real limits.
-          stub_const("#{described_class}::SIZE_LIMIT", 150)
-          stub_const("#{described_class}::COLLAPSE_LIMIT", 100)
-        end
-
         it 'prunes the diff as a large diff instead of as a collapsed diff' do
-          diff = described_class.new(@rugged_diff, expanded: false)
+          gitaly_diff.too_large = true
+          diff = described_class.new(gitaly_diff, expanded: false)
 
           expect(diff.diff).to be_empty
           expect(diff).to be_too_large
           expect(diff).not_to be_collapsed
         end
       end
-
-      context 'using a large binary diff' do
-        it 'does not prune the diff' do
-          expect_any_instance_of(Rugged::Diff::Delta).to receive(:binary?)
-            .and_return(true)
-
-          diff = described_class.new(@rugged_diff)
-
-          expect(diff.diff).not_to be_empty
-        end
-      end
     end
 
     context 'using a GitalyClient::Diff' do
@@ -259,31 +245,37 @@ EOT
     end
 
     it 'leave non-binary diffs as-is' do
-      diff = described_class.new(@rugged_diff)
+      diff = described_class.new(gitaly_diff)
 
       expect(diff.json_safe_diff).to eq(diff.diff)
     end
   end
 
   describe '#submodule?' do
-    before do
-      # TODO use a Gitaly diff object instead
-      rugged_commit = Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-        repository.rugged.rev_parse('5937ac0a7beb003549fc5fd26fc247adbce4a52e')
-      end
-
-      @diffs = rugged_commit.parents[0].diff(rugged_commit).patches
+    let(:gitaly_submodule_diff) do
+      Gitlab::GitalyClient::Diff.new(
+        from_path: 'gitlab-grack',
+        to_path: 'gitlab-grack',
+        old_mode: 0,
+        new_mode: 57344,
+        from_id: '0000000000000000000000000000000000000000',
+        to_id: '645f6c4c82fd3f5e06f67134450a570b795e55a6',
+        overflow_marker: false,
+        collapsed: false,
+        too_large: false,
+        patch: "@@ -0,0 +1 @@\n+Subproject commit 645f6c4c82fd3f5e06f67134450a570b795e55a6\n"
+      )
     end
 
-    it { expect(described_class.new(@diffs[0]).submodule?).to eq(false) }
-    it { expect(described_class.new(@diffs[1]).submodule?).to eq(true) }
+    it { expect(described_class.new(gitaly_diff).submodule?).to eq(false) }
+    it { expect(described_class.new(gitaly_submodule_diff).submodule?).to eq(true) }
   end
 
   describe '#line_count' do
     it 'returns the correct number of lines' do
-      diff = described_class.new(@rugged_diff)
+      diff = described_class.new(gitaly_diff)
 
-      expect(diff.line_count).to eq(9)
+      expect(diff.line_count).to eq(7)
     end
   end
 

spec/lib/gitlab/git/gitlab_projects_spec.rb

-require 'spec_helper'
-
-describe Gitlab::Git::GitlabProjects do
-  after do
-    TestEnv.clean_test_path
-  end
-
-  around do |example|
-    # TODO move this spec to gitaly-ruby. GitlabProjects is not used in gitlab-ce
-    Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-      example.run
-    end
-  end
-
-  let(:project) { create(:project, :repository) }
-
-  if $VERBOSE
-    let(:logger) { Logger.new(STDOUT) }
-  else
-    let(:logger) { double('logger').as_null_object }
-  end
-
-  let(:tmp_repos_path) { TestEnv.repos_path }
-  let(:repo_name) { project.disk_path + '.git' }
-  let(:tmp_repo_path) { File.join(tmp_repos_path, repo_name) }
-  let(:gl_projects) { build_gitlab_projects(TestEnv::REPOS_STORAGE, repo_name) }
-
-  describe '#initialize' do
-    it { expect(gl_projects.shard_path).to eq(tmp_repos_path) }
-    it { expect(gl_projects.repository_relative_path).to eq(repo_name) }
-    it { expect(gl_projects.repository_absolute_path).to eq(File.join(tmp_repos_path, repo_name)) }
-    it { expect(gl_projects.logger).to eq(logger) }
-  end
-
-  describe '#push_branches' do
-    let(:remote_name) { 'remote-name' }
-    let(:branch_name) { 'master' }
-    let(:cmd) { %W(#{Gitlab.config.git.bin_path} push -- #{remote_name} #{branch_name}) }
-    let(:force) { false }
-
-    subject { gl_projects.push_branches(remote_name, 600, force, [branch_name]) }
-
-    it 'executes the command' do
-      stub_spawn(cmd, 600, tmp_repo_path, success: true)
-
-      is_expected.to be_truthy
-    end
-
-    it 'fails' do
-      stub_spawn(cmd, 600, tmp_repo_path, success: false)
-
-      is_expected.to be_falsy
-    end
-
-    context 'with --force' do
-      let(:cmd) { %W(#{Gitlab.config.git.bin_path} push --force -- #{remote_name} #{branch_name}) }
-      let(:force) { true }
-
-      it 'executes the command' do
-        stub_spawn(cmd, 600, tmp_repo_path, success: true)
-
-        is_expected.to be_truthy
-      end
-    end
-  end
-
-  describe '#fetch_remote' do
-    let(:remote_name) { 'remote-name' }
-    let(:branch_name) { 'master' }
-    let(:force) { false }
-    let(:prune) { true }
-    let(:tags) { true }
-    let(:args) { { force: force, tags: tags, prune: prune }.merge(extra_args) }
-    let(:extra_args) { {} }
-    let(:cmd) { %W(#{Gitlab.config.git.bin_path} fetch #{remote_name} --quiet --prune --tags) }
-
-    subject { gl_projects.fetch_remote(remote_name, 600, args) }
-
-    def stub_tempfile(name, filename, opts = {})
-      chmod = opts.delete(:chmod)
-      file = StringIO.new
-
-      allow(file).to receive(:close!)
-      allow(file).to receive(:path).and_return(name)
-
-      expect(Tempfile).to receive(:new).with(filename).and_return(file)
-      expect(file).to receive(:chmod).with(chmod) if chmod
-
-      file
-    end
-
-    context 'with default args' do
-      it 'executes the command' do
-        stub_spawn(cmd, 600, tmp_repo_path, {}, success: true)
-
-        is_expected.to be_truthy
-      end
-
-      it 'fails' do
-        stub_spawn(cmd, 600, tmp_repo_path, {}, success: false)
-
-        is_expected.to be_falsy
-      end
-    end
-
-    context 'with --force' do
-      let(:force) { true }
-      let(:cmd) { %W(#{Gitlab.config.git.bin_path} fetch #{remote_name} --quiet --prune --force --tags) }
-
-      it 'executes the command with forced option' do
-        stub_spawn(cmd, 600, tmp_repo_path, {}, success: true)
-
-        is_expected.to be_truthy
-      end
-    end
-
-    context 'with --no-tags' do
-      let(:tags) { false }
-      let(:cmd) { %W(#{Gitlab.config.git.bin_path} fetch #{remote_name} --quiet --prune --no-tags) }
-
-      it 'executes the command' do
-        stub_spawn(cmd, 600, tmp_repo_path, {}, success: true)
-
-        is_expected.to be_truthy
-      end
-    end
-
-    context 'with no prune' do
-      let(:prune) { false }
-      let(:cmd) { %W(#{Gitlab.config.git.bin_path} fetch #{remote_name} --quiet --tags) }
-
-      it 'executes the command' do
-        stub_spawn(cmd, 600, tmp_repo_path, {}, success: true)
-
-        is_expected.to be_truthy
-      end
-    end
-
-    describe 'with an SSH key' do
-      let(:extra_args) { { ssh_key: 'SSH KEY' } }
-
-      it 'sets GIT_SSH to a custom script' do
-        script = stub_tempfile('scriptFile', 'gitlab-shell-ssh-wrapper', chmod: 0o755)
-        key = stub_tempfile('/tmp files/keyFile', 'gitlab-shell-key-file', chmod: 0o400)
-
-        stub_spawn(cmd, 600, tmp_repo_path, { 'GIT_SSH' => 'scriptFile' }, success: true)
-
-        is_expected.to be_truthy
-
-        expect(script.string).to eq("#!/bin/sh\nexec ssh '-oIdentityFile=\"/tmp files/keyFile\"' '-oIdentitiesOnly=\"yes\"' \"$@\"")
-        expect(key.string).to eq('SSH KEY')
-      end
-    end
-
-    describe 'with known_hosts data' do
-      let(:extra_args) { { known_hosts: 'KNOWN HOSTS' } }
-
-      it 'sets GIT_SSH to a custom script' do
-        script = stub_tempfile('scriptFile', 'gitlab-shell-ssh-wrapper', chmod: 0o755)
-        key = stub_tempfile('/tmp files/knownHosts', 'gitlab-shell-known-hosts', chmod: 0o400)
-
-        stub_spawn(cmd, 600, tmp_repo_path, { 'GIT_SSH' => 'scriptFile' }, success: true)
-
-        is_expected.to be_truthy
-
-        expect(script.string).to eq("#!/bin/sh\nexec ssh '-oStrictHostKeyChecking=\"yes\"' '-oUserKnownHostsFile=\"/tmp files/knownHosts\"' \"$@\"")
-        expect(key.string).to eq('KNOWN HOSTS')
-      end
-    end
-  end
-
-  describe '#import_project' do
-    let(:project) { create(:project) }
-    let(:import_url) { TestEnv.factory_repo_path_bare }
-    let(:cmd) { %W(#{Gitlab.config.git.bin_path} clone --bare -- #{import_url} #{tmp_repo_path}) }
-    let(:timeout) { 600 }
-
-    subject { gl_projects.import_project(import_url, timeout) }
-
-    shared_examples 'importing repository' do
-      context 'success import' do
-        it 'imports a repo' do
-          expect(File.exist?(File.join(tmp_repo_path, 'HEAD'))).to be_falsy
-
-          is_expected.to be_truthy
-
-          expect(File.exist?(File.join(tmp_repo_path, 'HEAD'))).to be_truthy
-        end
-      end
-
-      context 'already exists' do
-        it "doesn't import" do
-          FileUtils.mkdir_p(tmp_repo_path)
-
-          is_expected.to be_falsy
-        end
-      end
-    end
-
-    describe 'logging' do
-      it 'imports a repo' do
-        message = "Importing project from <#{import_url}> to <#{tmp_repo_path}>."
-        expect(logger).to receive(:info).with(message)
-
-        subject
-      end
-    end
-
-    context 'timeout' do
-      it 'does not import a repo' do
-        stub_spawn_timeout(cmd, timeout, nil)
-
-        message = "Importing project from <#{import_url}> to <#{tmp_repo_path}> failed."
-        expect(logger).to receive(:error).with(message)
-
-        is_expected.to be_falsy
-
-        expect(gl_projects.output).to eq("Timed out\n")
-        expect(File.exist?(File.join(tmp_repo_path, 'HEAD'))).to be_falsy
-      end
-    end
-
-    it_behaves_like 'importing repository'
-  end
-
-  describe '#fork_repository' do
-    let(:dest_repos) { TestEnv::REPOS_STORAGE }
-    let(:dest_repos_path) { tmp_repos_path }
-    let(:dest_repo_name) { File.join('@hashed', 'aa', 'bb', 'xyz.git') }
-    let(:dest_repo) { File.join(dest_repos_path, dest_repo_name) }
-
-    subject { gl_projects.fork_repository(dest_repos, dest_repo_name) }
-
-    before do
-      FileUtils.mkdir_p(dest_repos_path)
-    end
-
-    after do
-      FileUtils.rm_rf(dest_repos_path)
-    end
-
-    shared_examples 'forking a repository' do
-      it 'forks the repository' do
-        is_expected.to be_truthy
-
-        expect(File.exist?(dest_repo)).to be_truthy
-        expect(File.exist?(File.join(dest_repo, 'hooks', 'pre-receive'))).to be_truthy
-        expect(File.exist?(File.join(dest_repo, 'hooks', 'post-receive'))).to be_truthy
-      end
-
-      it 'does not fork if a project of the same name already exists' do
-        # create a fake project at the intended destination
-        FileUtils.mkdir_p(dest_repo)
-
-        is_expected.to be_falsy
-      end
-    end
-
-    it_behaves_like 'forking a repository'
-
-    # We seem to be stuck to having only one working Gitaly storage in tests, changing
-    # that is not very straight-forward so I'm leaving this test here for now till
-    # https://gitlab.com/gitlab-org/gitlab-ce/issues/41393 is fixed.
-    context 'different storages' do
-      let(:dest_repos) { 'alternative' }
-      let(:dest_repos_path) { File.join(File.dirname(tmp_repos_path), dest_repos) }
-
-      before do
-        stub_storage_settings(dest_repos => { 'path' => dest_repos_path })
-      end
-
-      it 'forks the repo' do
-        is_expected.to be_truthy
-
-        expect(File.exist?(dest_repo)).to be_truthy
-        expect(File.exist?(File.join(dest_repo, 'hooks', 'pre-receive'))).to be_truthy
-        expect(File.exist?(File.join(dest_repo, 'hooks', 'post-receive'))).to be_truthy
-      end
-    end
-
-    describe 'log messages' do
-      describe 'successful fork' do
-        it do
-          message = "Forking repository from <#{tmp_repo_path}> to <#{dest_repo}>."
-          expect(logger).to receive(:info).with(message)
-
-          subject
-        end
-      end
-
-      describe 'failed fork due existing destination' do
-        it do
-          FileUtils.mkdir_p(dest_repo)
-          message = "fork-repository failed: destination repository <#{dest_repo}> already exists."
-          expect(logger).to receive(:error).with(message)
-
-          subject
-        end
-      end
-    end
-  end
-
-  def build_gitlab_projects(*args)
-    described_class.new(
-      *args,
-      global_hooks_path: Gitlab.config.gitlab_shell.hooks_path,
-      logger: logger
-    )
-  end
-
-  def stub_spawn(*args, success: true)
-    exitstatus = success ? 0 : nil
-    expect(gl_projects).to receive(:popen_with_timeout).with(*args)
-      .and_return(["output", exitstatus])
-  end
-
-  def stub_spawn_timeout(*args)
-    expect(gl_projects).to receive(:popen_with_timeout).with(*args)
-      .and_raise(Timeout::Error)
-  end
-end

spec/lib/gitlab/git/hook_spec.rb

-require 'spec_helper'
-require 'fileutils'
-
-describe Gitlab::Git::Hook do
-  before do
-    # We need this because in the spec/spec_helper.rb we define it like this:
-    # allow_any_instance_of(Gitlab::Git::Hook).to receive(:trigger).and_return([true, nil])
-    allow_any_instance_of(described_class).to receive(:trigger).and_call_original
-  end
-
-  around do |example|
-    # TODO move hook tests to gitaly-ruby. Hook will disappear from gitlab-ce
-    Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-      example.run
-    end
-  end
-
-  describe "#trigger" do
-    set(:project) { create(:project, :repository) }
-    let(:repository) { project.repository.raw_repository }
-    let(:repo_path) { repository.path }
-    let(:hooks_dir) { File.join(repo_path, 'hooks') }
-    let(:user) { create(:user) }
-    let(:gl_id) { Gitlab::GlId.gl_id(user) }
-    let(:gl_username) { user.username }
-
-    def create_hook(name)
-      FileUtils.mkdir_p(hooks_dir)
-      hook_path = File.join(hooks_dir, name)
-      File.open(hook_path, 'w', 0755) do |f|
-        f.write(<<~HOOK)
-          #!/bin/sh
-          exit 0
-        HOOK
-      end
-    end
-
-    def create_failing_hook(name)
-      FileUtils.mkdir_p(hooks_dir)
-      hook_path = File.join(hooks_dir, name)
-      File.open(hook_path, 'w', 0755) do |f|
-        f.write(<<~HOOK)
-          #!/bin/sh
-          echo 'regular message from the hook'
-          echo 'error message from the hook' 1>&2
-          echo 'error message from the hook line 2' 1>&2
-          exit 1
-        HOOK
-      end
-    end
-
-    ['pre-receive', 'post-receive', 'update'].each do |hook_name|
-      context "when triggering a #{hook_name} hook" do
-        context "when the hook is successful" do
-          let(:hook_path) { File.join(hooks_dir, hook_name) }
-          let(:gl_repository) { Gitlab::GlRepository.gl_repository(project, false) }
-          let(:env) do
-            {
-              'GL_ID' => gl_id,
-              'GL_USERNAME' => gl_username,
-              'PWD' => repo_path,
-              'GL_PROTOCOL' => 'web',
-              'GL_REPOSITORY' => gl_repository
-            }
-          end
-
-          it "returns success with no errors" do
-            create_hook(hook_name)
-            hook = described_class.new(hook_name, repository)
-            blank = Gitlab::Git::BLANK_SHA
-            ref = Gitlab::Git::BRANCH_REF_PREFIX + 'new_branch'
-
-            if hook_name != 'update'
-              expect(Open3).to receive(:popen3)
-                .with(env, hook_path, chdir: repo_path).and_call_original
-            end
-
-            status, errors = hook.trigger(gl_id, gl_username, blank, blank, ref)
-            expect(status).to be true
-            expect(errors).to be_blank
-          end
-        end
-
-        context "when the hook is unsuccessful" do
-          it "returns failure with errors" do
-            create_failing_hook(hook_name)
-            hook = described_class.new(hook_name, repository)
-            blank = Gitlab::Git::BLANK_SHA
-            ref = Gitlab::Git::BRANCH_REF_PREFIX + 'new_branch'
-
-            status, errors = hook.trigger(gl_id, gl_username, blank, blank, ref)
-            expect(status).to be false
-            expect(errors).to eq("error message from the hook\nerror message from the hook line 2\n")
-          end
-        end
-      end
-    end
-
-    context "when the hook doesn't exist" do
-      it "returns success with no errors" do
-        hook = described_class.new('unknown_hook', repository)
-        blank = Gitlab::Git::BLANK_SHA
-        ref = Gitlab::Git::BRANCH_REF_PREFIX + 'new_branch'
-
-        status, errors = hook.trigger(gl_id, gl_username, blank, blank, ref)
-        expect(status).to be true
-        expect(errors).to be_nil
-      end
-    end
-  end
-end

spec/lib/gitlab/git/hooks_service_spec.rb

-require 'spec_helper'
-
-describe Gitlab::Git::HooksService, :seed_helper do
-  let(:gl_id) { 'user-456' }
-  let(:gl_username) { 'janedoe' }
-  let(:user) { Gitlab::Git::User.new(gl_username, 'Jane Doe', 'janedoe@example.com', gl_id) }
-  let(:repository) { Gitlab::Git::Repository.new('default', TEST_REPO_PATH, 'project-123') }
-  let(:service) { described_class.new }
-  let(:blankrev) { Gitlab::Git::BLANK_SHA }
-  let(:oldrev) { SeedRepo::Commit::PARENT_ID }
-  let(:newrev) { SeedRepo::Commit::ID }
-  let(:ref) { 'refs/heads/feature' }
-
-  describe '#execute' do
-    context 'when receive hooks were successful' do
-      let(:hook) { double(:hook) }
-
-      it 'calls all three hooks' do
-        expect(Gitlab::Git::Hook).to receive(:new).exactly(3).times.and_return(hook)
-        expect(hook).to receive(:trigger).with(gl_id, gl_username, blankrev, newrev, ref)
-          .exactly(3).times.and_return([true, nil])
-
-        service.execute(user, repository, blankrev, newrev, ref) { }
-      end
-    end
-
-    context 'when pre-receive hook failed' do
-      it 'does not call post-receive hook' do
-        expect(service).to receive(:run_hook).with('pre-receive').and_return([false, 'hello world'])
-        expect(service).not_to receive(:run_hook).with('post-receive')
-
-        expect do
-          service.execute(user, repository, blankrev, newrev, ref)
-        end.to raise_error(Gitlab::Git::PreReceiveError, 'hello world')
-      end
-    end
-
-    context 'when update hook failed' do
-      it 'does not call post-receive hook' do
-        expect(service).to receive(:run_hook).with('pre-receive').and_return([true, nil])
-        expect(service).to receive(:run_hook).with('update').and_return([false, 'hello world'])
-        expect(service).not_to receive(:run_hook).with('post-receive')
-
-        expect do
-          service.execute(user, repository, blankrev, newrev, ref)
-        end.to raise_error(Gitlab::Git::PreReceiveError, 'hello world')
-      end
-    end
-  end
-end

spec/lib/gitlab/git/index_spec.rb

-require 'spec_helper'
-
-describe Gitlab::Git::Index, :seed_helper do
-  let(:repository) { Gitlab::Git::Repository.new('default', TEST_REPO_PATH, '') }
-  let(:index) { described_class.new(repository) }
-
-  before do
-    index.read_tree(lookup('master').tree)
-  end
-
-  around do |example|
-    # TODO move these specs to gitaly-ruby. The Index class will disappear from gitlab-ce
-    Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-      example.run
-    end
-  end
-
-  describe '#create' do
-    let(:options) do
-      {
-        content: 'Lorem ipsum...',
-        file_path: 'documents/story.txt'
-      }
-    end
-
-    context 'when no file at that path exists' do
-      it 'creates the file in the index' do
-        index.create(options)
-
-        entry = index.get(options[:file_path])
-
-        expect(entry).not_to be_nil
-        expect(lookup(entry[:oid]).content).to eq(options[:content])
-      end
-    end
-
-    context 'when a file at that path exists' do
-      before do
-        options[:file_path] = 'files/executables/ls'
-      end
-
-      it 'raises an error' do
-        expect { index.create(options) }.to raise_error('A file with this name already exists')
-      end
-    end
-
-    context 'when content is in base64' do
-      before do
-        options[:content] = Base64.encode64(options[:content])
-        options[:encoding] = 'base64'
-      end
-
-      it 'decodes base64' do
-        index.create(options)
-
-        entry = index.get(options[:file_path])
-        expect(lookup(entry[:oid]).content).to eq(Base64.decode64(options[:content]))
-      end
-    end
-
-    context 'when content contains CRLF' do
-      before do
-        repository.autocrlf = :input
-        options[:content] = "Hello,\r\nWorld"
-      end
-
-      it 'converts to LF' do
-        index.create(options)
-
-        entry = index.get(options[:file_path])
-        expect(lookup(entry[:oid]).content).to eq("Hello,\nWorld")
-      end
-    end
-  end
-
-  describe '#create_dir' do
-    let(:options) do
-      {
-        file_path: 'newdir'
-      }
-    end
-
-    context 'when no file or dir at that path exists' do
-      it 'creates the dir in the index' do
-        index.create_dir(options)
-
-        entry = index.get(options[:file_path] + '/.gitkeep')
-
-        expect(entry).not_to be_nil
-      end
-    end
-
-    context 'when a file at that path exists' do
-      before do
-        options[:file_path] = 'files/executables/ls'
-      end
-
-      it 'raises an error' do
-        expect { index.create_dir(options) }.to raise_error('A file with this name already exists')
-      end
-    end
-
-    context 'when a directory at that path exists' do
-      before do
-        options[:file_path] = 'files/executables'
-      end
-
-      it 'raises an error' do
-        expect { index.create_dir(options) }.to raise_error('A directory with this name already exists')
-      end
-    end
-  end
-
-  describe '#update' do
-    let(:options) do
-      {
-        content: 'Lorem ipsum...',
-        file_path: 'README.md'
-      }
-    end
-
-    context 'when no file at that path exists' do
-      before do
-        options[:file_path] = 'documents/story.txt'
-      end
-
-      it 'raises an error' do
-        expect { index.update(options) }.to raise_error("A file with this name doesn't exist")
-      end
-    end
-
-    context 'when a file at that path exists' do
-      it 'updates the file in the index' do
-        index.update(options)
-
-        entry = index.get(options[:file_path])
-
-        expect(lookup(entry[:oid]).content).to eq(options[:content])
-      end
-
-      it 'preserves file mode' do
-        options[:file_path] = 'files/executables/ls'
-
-        index.update(options)
-
-        entry = index.get(options[:file_path])
-
-        expect(entry[:mode]).to eq(0100755)
-      end
-    end
-  end
-
-  describe '#move' do
-    let(:options) do
-      {
-        content: 'Lorem ipsum...',
-        previous_path: 'README.md',
-        file_path: 'NEWREADME.md'
-      }
-    end
-
-    context 'when no file at that path exists' do
-      it 'raises an error' do
-        options[:previous_path] = 'documents/story.txt'
-
-        expect { index.move(options) }.to raise_error("A file with this name doesn't exist")
-      end
-    end
-
-    context 'when a file at the new path already exists' do
-      it 'raises an error' do
-        options[:file_path] = 'CHANGELOG'
-
-        expect { index.move(options) }.to raise_error("A file with this name already exists")
-      end
-    end
-
-    context 'when a file at that path exists' do
-      it 'removes the old file in the index' do
-        index.move(options)
-
-        entry = index.get(options[:previous_path])
-
-        expect(entry).to be_nil
-      end
-
-      it 'creates the new file in the index' do
-        index.move(options)
-
-        entry = index.get(options[:file_path])
-
-        expect(entry).not_to be_nil
-        expect(lookup(entry[:oid]).content).to eq(options[:content])
-      end
-
-      it 'preserves file mode' do
-        options[:previous_path] = 'files/executables/ls'
-
-        index.move(options)
-
-        entry = index.get(options[:file_path])
-
-        expect(entry[:mode]).to eq(0100755)
-      end
-    end
-  end
-
-  describe '#delete' do
-    let(:options) do
-      {
-        file_path: 'README.md'
-      }
-    end
-
-    context 'when no file at that path exists' do
-      before do
-        options[:file_path] = 'documents/story.txt'
-      end
-
-      it 'raises an error' do
-        expect { index.delete(options) }.to raise_error("A file with this name doesn't exist")
-      end
-    end
-
-    context 'when a file at that path exists' do
-      it 'removes the file in the index' do
-        index.delete(options)
-
-        entry = index.get(options[:file_path])
-
-        expect(entry).to be_nil
-      end
-    end
-  end
-
-  def lookup(revision)
-    repository.rugged.rev_parse(revision)
-  end
-end

spec/lib/gitlab/git/popen_spec.rb

-require 'spec_helper'
-
-describe 'Gitlab::Git::Popen' do
-  let(:path) { Rails.root.join('tmp').to_s }
-  let(:test_string) { 'The quick brown fox jumped over the lazy dog' }
-  # The pipe buffer is typically 64K. This string is about 440K.
-  let(:spew_command) { ['bash', '-c', "for i in {1..10000}; do echo '#{test_string}' 1>&2; done"] }
-
-  let(:klass) do
-    Class.new(Object) do
-      include Gitlab::Git::Popen
-    end
-  end
-
-  context 'popen' do
-    context 'zero status' do
-      let(:result) { klass.new.popen(%w(ls), path) }
-      let(:output) { result.first }
-      let(:status) { result.last }
-
-      it { expect(status).to be_zero }
-      it { expect(output).to include('tests') }
-    end
-
-    context 'non-zero status' do
-      let(:result) { klass.new.popen(%w(cat NOTHING), path) }
-      let(:output) { result.first }
-      let(:status) { result.last }
-
-      it { expect(status).to eq(1) }
-      it { expect(output).to include('No such file or directory') }
-    end
-
-    context 'unsafe string command' do
-      it 'raises an error when it gets called with a string argument' do
-        expect { klass.new.popen('ls', path) }.to raise_error(RuntimeError)
-      end
-    end
-
-    context 'with custom options' do
-      let(:vars) { { 'foobar' => 123, 'PWD' => path } }
-      let(:options) { { chdir: path } }
-
-      it 'calls popen3 with the provided environment variables' do
-        expect(Open3).to receive(:popen3).with(vars, 'ls', options)
-
-        klass.new.popen(%w(ls), path, { 'foobar' => 123 })
-      end
-    end
-
-    context 'use stdin' do
-      let(:result) { klass.new.popen(%w[cat], path) { |stdin| stdin.write 'hello' } }
-      let(:output) { result.first }
-      let(:status) { result.last }
-
-      it { expect(status).to be_zero }
-      it { expect(output).to eq('hello') }
-    end
-
-    context 'with lazy block' do
-      it 'yields a lazy io' do
-        expect_lazy_io = lambda do |io|
-          expect(io).to be_a Enumerator::Lazy
-          expect(io.inspect).to include('#<IO:fd')
-        end
-
-        klass.new.popen(%w[ls], path, lazy_block: expect_lazy_io)
-      end
-
-      it "doesn't wait for process exit" do
-        Timeout.timeout(2) do
-          klass.new.popen(%w[yes], path, lazy_block: ->(io) {})
-        end
-      end
-    end
-
-    context 'with a process that writes a lot of data to stderr' do
-      it 'returns zero' do
-        output, status = klass.new.popen(spew_command, path)
-
-        expect(output).to include(test_string)
-        expect(status).to eq(0)
-      end
-    end
-  end
-
-  context 'popen_with_timeout' do
-    let(:timeout) { 1.second }
-
-    context 'no timeout' do
-      context 'zero status' do
-        let(:result) { klass.new.popen_with_timeout(%w(ls), timeout, path) }
-        let(:output) { result.first }
-        let(:status) { result.last }
-
-        it { expect(status).to be_zero }
-        it { expect(output).to include('tests') }
-      end
-
-      context 'multi-line string' do
-        let(:test_string) { "this is 1 line\n2nd line\n3rd line\n" }
-        let(:result) { klass.new.popen_with_timeout(['echo', test_string], timeout, path) }
-        let(:output) { result.first }
-        let(:status) { result.last }
-
-        it { expect(status).to be_zero }
-        # echo adds its own line
-        it { expect(output).to eq(test_string + "\n") }
-      end
-
-      context 'non-zero status' do
-        let(:result) { klass.new.popen_with_timeout(%w(cat NOTHING), timeout, path) }
-        let(:output) { result.first }
-        let(:status) { result.last }
-
-        it { expect(status).to eq(1) }
-        it { expect(output).to include('No such file or directory') }
-      end
-
-      context 'unsafe string command' do
-        it 'raises an error when it gets called with a string argument' do
-          expect { klass.new.popen_with_timeout('ls', timeout, path) }.to raise_error(RuntimeError)
-        end
-      end
-    end
-
-    context 'timeout' do
-      context 'timeout' do
-        it "raises a Timeout::Error" do
-          expect { klass.new.popen_with_timeout(%w(sleep 1000), timeout, path) }.to raise_error(Timeout::Error)
-        end
-
-        it "handles processes that do not shutdown correctly" do
-          expect { klass.new.popen_with_timeout(['bash', '-c', "trap -- '' SIGTERM; sleep 1000"], timeout, path) }.to raise_error(Timeout::Error)
-        end
-
-        it 'handles process that writes a lot of data to stderr' do
-          output, status = klass.new.popen_with_timeout(spew_command, timeout, path)
-
-          expect(output).to include(test_string)
-          expect(status).to eq(0)
-        end
-      end
-
-      context 'timeout period' do
-        let(:time_taken) do
-          begin
-            start = Time.now
-            klass.new.popen_with_timeout(%w(sleep 1000), timeout, path)
-          rescue
-            Time.now - start
-          end
-        end
-
-        it { expect(time_taken).to be >= timeout }
-      end
-
-      context 'clean up' do
-        let(:instance) { klass.new }
-
-        it 'kills the child process' do
-          expect(instance).to receive(:kill_process_group_for_pid).and_wrap_original do |m, *args|
-            # is the PID, and it should not be running at this point
-            m.call(*args)
-
-            pid = args.first
-            begin
-              Process.getpgid(pid)
-              raise "The child process should have been killed"
-            rescue Errno::ESRCH
-            end
-          end
-
-          expect { instance.popen_with_timeout(['bash', '-c', "trap -- '' SIGTERM; sleep 1000"], timeout, path) }.to raise_error(Timeout::Error)
-        end
-      end
-    end
-  end
-end

spec/lib/gitlab/import_export/repo_restorer_spec.rb

 require 'spec_helper'
 
 describe Gitlab::ImportExport::RepoRestorer do
+  include GitHelpers
+
   describe 'bundle a project Git repo' do
     let(:user) { create(:user) }
     let!(:project_with_repo) { create(:project, :repository, name: 'test-repo-restorer', path: 'test-repo-restorer') }
@@ -36,9 +38,7 @@ describe Gitlab::ImportExport::RepoRestorer do
     it 'has the webhooks' do
       restorer.restore
 
-      Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-        expect(Gitlab::Git::Hook.new('post-receive', project.repository.raw_repository)).to exist
-      end
+      expect(project_hook_exists?(project)).to be true
     end
   end
 end

spec/lib/gitlab/shell_spec.rb

@@ -7,15 +7,10 @@ describe Gitlab::Shell do
   let(:repository) { project.repository }
   let(:gitlab_shell) { described_class.new }
   let(:popen_vars) { { 'GIT_TERMINAL_PROMPT' => ENV['GIT_TERMINAL_PROMPT'] } }
-  let(:gitlab_projects) { double('gitlab_projects') }
   let(:timeout) { Gitlab.config.gitlab_shell.git_timeout }
 
   before do
     allow(Project).to receive(:find).and_return(project)
-
-    allow(gitlab_shell).to receive(:gitlab_projects)
-      .with(project.repository_storage, project.disk_path + '.git')
-      .and_return(gitlab_projects)
   end
 
   it { is_expected.to respond_to :add_key }

spec/models/clusters/applications/jupyter_spec.rb

@@ -108,8 +108,21 @@ describe Clusters::Applications::Jupyter do
       expect(values).to include('rbac')
       expect(values).to include('proxy')
       expect(values).to include('auth')
+      expect(values).to include('singleuser')
       expect(values).to match(/clientId: '?#{application.oauth_application.uid}/)
       expect(values).to match(/callbackUrl: '?#{application.callback_url}/)
     end
+
+    context 'when cluster belongs to a project' do
+      let(:project) { create(:project) }
+
+      before do
+        application.cluster.projects << project
+      end
+
+      it 'sets GitLab project id' do
+        expect(values).to match(/GITLAB_PROJECT_ID: '?#{project.id}/)
+      end
+    end
   end
 end

spec/models/repository_spec.rb

@@ -1028,194 +1028,6 @@ describe Repository do
     end
   end
 
-  describe '#update_branch_with_hooks' do
-    let(:old_rev) { '0b4bc9a49b562e85de7cc9e834518ea6828729b9' } # git rev-parse feature
-    let(:new_rev) { 'a74ae73c1ccde9b974a70e82b901588071dc142a' } # commit whose parent is old_rev
-    let(:updating_ref) { 'refs/heads/feature' }
-    let(:target_project) { project }
-    let(:target_repository) { target_project.repository }
-
-    around do |example|
-      # TODO Gitlab::Git::OperationService will be moved to gitaly-ruby and disappear from this repo
-      Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-        example.run
-      end
-    end
-
-    context 'when pre hooks were successful' do
-      before do
-        service = Gitlab::Git::HooksService.new
-        expect(Gitlab::Git::HooksService).to receive(:new).and_return(service)
-        expect(service).to receive(:execute)
-          .with(git_user, target_repository.raw_repository, old_rev, new_rev, updating_ref)
-          .and_yield(service).and_return(true)
-      end
-
-      it 'runs without errors' do
-        expect do
-          Gitlab::Git::OperationService.new(git_user, repository.raw_repository).with_branch('feature') do
-            new_rev
-          end
-        end.not_to raise_error
-      end
-
-      it 'ensures the autocrlf Git option is set to :input' do
-        service = Gitlab::Git::OperationService.new(git_user, repository.raw_repository)
-
-        expect(service).to receive(:update_autocrlf_option)
-
-        service.with_branch('feature') { new_rev }
-      end
-
-      context "when the branch wasn't empty" do
-        it 'updates the head' do
-          expect(repository.find_branch('feature').dereferenced_target.id).to eq(old_rev)
-
-          Gitlab::Git::OperationService.new(git_user, repository.raw_repository).with_branch('feature') do
-            new_rev
-          end
-
-          expect(repository.find_branch('feature').dereferenced_target.id).to eq(new_rev)
-        end
-      end
-
-      context 'when target project does not have the commit' do
-        let(:target_project) { create(:project, :empty_repo) }
-        let(:old_rev) { Gitlab::Git::BLANK_SHA }
-        let(:new_rev) { project.commit('feature').sha }
-        let(:updating_ref) { 'refs/heads/master' }
-
-        it 'fetch_ref and create the branch' do
-          expect(target_project.repository.raw_repository).to receive(:fetch_ref)
-            .and_call_original
-
-          Gitlab::Git::OperationService.new(git_user, target_repository.raw_repository)
-            .with_branch(
-              'master',
-              start_repository: project.repository.raw_repository,
-              start_branch_name: 'feature') { new_rev }
-
-          expect(target_repository.branch_names).to contain_exactly('master')
-        end
-      end
-
-      context 'when target project already has the commit' do
-        let(:target_project) { create(:project, :repository) }
-
-        it 'does not fetch_ref and just pass the commit' do
-          expect(target_repository).not_to receive(:fetch_ref)
-
-          Gitlab::Git::OperationService.new(git_user, target_repository.raw_repository)
-            .with_branch('feature', start_repository: project.repository.raw_repository) { new_rev }
-        end
-      end
-    end
-
-    context 'when temporary ref failed to be created from other project' do
-      let(:target_project) { create(:project, :empty_repo) }
-
-      before do
-        expect(target_project.repository.raw_repository).to receive(:run_git)
-      end
-
-      it 'raises Rugged::ReferenceError' do
-        expect do
-          Gitlab::Git::OperationService.new(git_user, target_project.repository.raw_repository)
-            .with_branch('feature',
-                         start_repository: project.repository.raw_repository,
-                         &:itself)
-        end.to raise_error(Gitlab::Git::CommandError)
-      end
-    end
-
-    context 'when the update adds more than one commit' do
-      let(:old_rev) { '33f3729a45c02fc67d00adb1b8bca394b0e761d9' }
-
-      it 'runs without errors' do
-        # old_rev is an ancestor of new_rev
-        expect(repository.merge_base(old_rev, new_rev)).to eq(old_rev)
-
-        # old_rev is not a direct ancestor (parent) of new_rev
-        expect(repository.rugged.lookup(new_rev).parent_ids).not_to include(old_rev)
-
-        branch = 'feature-ff-target'
-        repository.add_branch(user, branch, old_rev)
-
-        expect do
-          Gitlab::Git::OperationService.new(git_user, repository.raw_repository).with_branch(branch) do
-            new_rev
-          end
-        end.not_to raise_error
-      end
-    end
-
-    context 'when the update would remove commits from the target branch' do
-      let(:branch) { 'master' }
-      let(:old_rev) { repository.find_branch(branch).dereferenced_target.sha }
-
-      it 'raises an exception' do
-        # The 'master' branch is NOT an ancestor of new_rev.
-        expect(repository.merge_base(old_rev, new_rev)).not_to eq(old_rev)
-
-        # Updating 'master' to new_rev would lose the commits on 'master' that
-        # are not contained in new_rev. This should not be allowed.
-        expect do
-          Gitlab::Git::OperationService.new(git_user, repository.raw_repository).with_branch(branch) do
-            new_rev
-          end
-        end.to raise_error(Gitlab::Git::CommitError)
-      end
-    end
-
-    context 'when pre hooks failed' do
-      it 'gets an error' do
-        allow_any_instance_of(Gitlab::Git::Hook).to receive(:trigger).and_return([false, ''])
-
-        expect do
-          Gitlab::Git::OperationService.new(git_user, repository.raw_repository).with_branch('feature') do
-            new_rev
-          end
-        end.to raise_error(Gitlab::Git::PreReceiveError)
-      end
-    end
-
-    context 'when target branch is different from source branch' do
-      before do
-        allow_any_instance_of(Gitlab::Git::Hook).to receive(:trigger).and_return([true, ''])
-      end
-
-      subject do
-        Gitlab::Git::OperationService.new(git_user, repository.raw_repository).with_branch('new-feature') do
-          new_rev
-        end
-      end
-
-      it 'returns branch_created as true' do
-        expect(subject).not_to be_repo_created
-        expect(subject).to     be_branch_created
-      end
-    end
-
-    context 'when repository is empty' do
-      before do
-        allow_any_instance_of(Gitlab::Git::Hook).to receive(:trigger).and_return([true, ''])
-      end
-
-      it 'expires creation and branch cache' do
-        empty_repository = create(:project, :empty_repo).repository
-
-        expect(empty_repository).to receive(:expire_exists_cache)
-        expect(empty_repository).to receive(:expire_root_ref_cache)
-        expect(empty_repository).to receive(:expire_emptiness_caches)
-        expect(empty_repository).to receive(:expire_branches_cache)
-
-        empty_repository.create_file(user, 'CHANGELOG', 'Changelog!',
-                                     message: 'Updates file content',
-                                     branch_name: 'master')
-      end
-    end
-  end
-
   describe '#exists?' do
     it 'returns true when a repository exists' do
       expect(repository.exists?).to be(true)
@@ -1298,40 +1110,6 @@ describe Repository do
     end
   end
 
-  describe '#update_autocrlf_option' do
-    around do |example|
-      # TODO Gitlab::Git::OperationService will be moved to gitaly-ruby and disappear from this repo
-      Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-        example.run
-      end
-    end
-
-    describe 'when autocrlf is not already set to :input' do
-      before do
-        repository.raw_repository.autocrlf = true
-      end
-
-      it 'sets autocrlf to :input' do
-        Gitlab::Git::OperationService.new(nil, repository.raw_repository).send(:update_autocrlf_option)
-
-        expect(repository.raw_repository.autocrlf).to eq(:input)
-      end
-    end
-
-    describe 'when autocrlf is already set to :input' do
-      before do
-        repository.raw_repository.autocrlf = :input
-      end
-
-      it 'does nothing' do
-        expect(repository.raw_repository).not_to receive(:autocrlf=)
-          .with(:input)
-
-        Gitlab::Git::OperationService.new(nil, repository.raw_repository).send(:update_autocrlf_option)
-      end
-    end
-  end
-
   describe '#empty?' do
     let(:empty_repository) { create(:project_empty_repo).repository }
 
@@ -2025,27 +1803,6 @@ describe Repository do
     end
   end
 
-  describe '#update_ref' do
-    around do |example|
-      # TODO Gitlab::Git::OperationService will be moved to gitaly-ruby and disappear from this repo
-      Gitlab::GitalyClient::StorageSettings.allow_disk_access do
-        example.run
-      end
-    end
-
-    it 'can create a ref' do
-      Gitlab::Git::OperationService.new(nil, repository.raw_repository).send(:update_ref, 'refs/heads/foobar', 'refs/heads/master', Gitlab::Git::BLANK_SHA)
-
-      expect(repository.find_branch('foobar')).not_to be_nil
-    end
-
-    it 'raises CommitError when the ref update fails' do
-      expect do
-        Gitlab::Git::OperationService.new(nil, repository.raw_repository).send(:update_ref, 'refs/heads/master', 'refs/heads/master', Gitlab::Git::BLANK_SHA)
-      end.to raise_error(Gitlab::Git::CommitError)
-    end
-  end
-
   describe '#contribution_guide', :use_clean_rails_memory_store_caching do
     it 'returns and caches the output' do
       expect(repository).to receive(:file_on_head)

spec/requests/api/projects_spec.rb

@@ -148,6 +148,16 @@ describe API::Projects do
         expect(json_response.first.keys).to include('open_issues_count')
       end
 
+      it 'does not include projects marked for deletion' do
+        project.update(pending_delete: true)
+
+        get api('/projects', user)
+
+        expect(response).to have_gitlab_http_status(200)
+        expect(json_response).to be_an Array
+        expect(json_response.map { |p| p['id'] }).not_to include(project.id)
+      end
+
       it 'does not include open_issues_count if issues are disabled' do
         project.project_feature.update_attribute(:issues_access_level, ProjectFeature::DISABLED)
 
@@ -1062,6 +1072,15 @@ describe API::Projects do
         expect(json_response).not_to include("import_error")
       end
 
+      it 'returns 404 when project is marked for deletion' do
+        project.update(pending_delete: true)
+
+        get api("/projects/#{project.id}", user)
+
+        expect(response).to have_gitlab_http_status(404)
+        expect(json_response['message']).to eq('404 Project Not Found')
+      end
+
       context 'links exposure' do
         it 'exposes related resources full URIs' do
           get api("/projects/#{project.id}", user)

spec/support/helpers/git_helpers.rb

+# frozen_string_literal: true
+
+module GitHelpers
+  def project_hook_exists?(project)
+    Gitlab::GitalyClient::StorageSettings.allow_disk_access do
+      project_path = project.repository.raw_repository.path
+
+      File.exist?(File.join(project_path, 'hooks', 'post-receive'))
+    end
+  end
+end

spec/support/helpers/test_env.rb

@@ -107,10 +107,6 @@ module TestEnv
       .and_call_original
   end
 
-  def disable_pre_receive
-    allow_any_instance_of(Gitlab::Git::Hook).to receive(:trigger).and_return([true, nil])
-  end
-
   # Clean /tmp/tests
   #
   # Keeps gitlab-shell and gitlab-test

spec/support/shared_examples/features/editable_merge_request_shared_examples.rb

@@ -73,9 +73,13 @@ RSpec.shared_examples 'an editable merge request' do
 
   it 'description has autocomplete', :js do
     find('#merge_request_description').native.send_keys('')
-    fill_in 'merge_request_description', with: '@'
+    fill_in 'merge_request_description', with: user.to_reference[0..4]
 
-    expect(page).to have_selector('.atwho-view')
+    wait_for_requests
+
+    page.within('.atwho-view') do
+      expect(page).to have_content(user2.name)
+    end
   end
 
   it 'has class js-quick-submit in form' do

spec/workers/project_service_worker_spec.rb

+# frozen_string_literal: true
+require 'spec_helper'
+
+describe ProjectServiceWorker, '#perform' do
+  let(:worker) { described_class.new }
+  let(:service) { JiraService.new }
+
+  before do
+    allow(Service).to receive(:find).and_return(service)
+  end
+
+  it 'executes service with given data' do
+    data = { test: 'test' }
+    expect(service).to receive(:execute).with(data)
+
+    worker.perform(1, data)
+  end
+
+  it 'logs error messages' do
+    allow(service).to receive(:execute).and_raise(StandardError, 'invalid URL')
+    expect(Sidekiq.logger).to receive(:error).with({ class: described_class.name, service_class: service.class.name, message: "invalid URL" })
+
+    worker.perform(1, {})
+  end
+end