Merge branch 'master' of dev.gitlab.org:gitlab/gitlabhq into upstream-ce

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>

Conflicts:
	app/models/group.rb
	app/models/project.rb
	features/steps/shared/project.rb

CHANGELOG

@@ -7,6 +7,19 @@ v 7.1.0
   - Add @all mention for comments
   - Dont show reply button if user is not signed in
   - Expose more information for issues with webhook
+  - Add a mention of the merge request into the default merge request commit message
+  - Imrpove code highlight, introduce support for more languages like Go, Clojure, Erlang etc
+  - Fix concurrency issue in repository download
+  - Dont allow repository name start with ?
+  - Improve email threading (Pierre de La Morinerie)
+  - Cleaner help page
+  - Group milestones
+  - Improved email notifications
+  - Contributors API (sponsored by Mobbr)
+  - Fix LDAP TLS authentication (Boris HUISGEN)
+  - Show VERSION information on project sidebar
+  - Improve branch removal logic when accept MR
+  - Fix bug where comment form is spawned inside the Reply button
 
 v 7.0.0
   - The CPU no longer overheats when you hold down the spacebar

CONTRIBUTING.md

@@ -42,7 +42,7 @@ Please send a merge request with a tested solution or a merge request with a fai
 1. **Observed behavior**
 1. **Relevant logs and/or screenshots:** Please use code blocks (\`\`\`) to format console output, logs, and code as it's very hard to read otherwise.
 1. **Output of checks**
-    * Results of GitLab [Application Check](doc/install/installation.md#check-application-status) (`sudo -u git -H bundle exec rake gitlab:check RAILS_ENV=production`); we will only investigate if the tests are passing
+    * Results of GitLab [Application Check](doc/install/installation.md#check-application-status) (`sudo -u git -H bundle exec rake gitlab:check RAILS_ENV=production SANITIZE=true`); we will only investigate if the tests are passing
     * Version of GitLab you are running; we will only investigate issues in the latest stable and development releases as per the [maintenance policy](MAINTENANCE.md)
     * Add the last commit sha1 of the GitLab version you used to replicate the issue (obtainable from the help page)
     * Describe your setup (use relevant parts from `sudo -u git -H bundle exec rake gitlab:env:info RAILS_ENV=production`)

Gemfile

@@ -10,8 +10,6 @@ end
 
 gem "rails", "~> 4.1.0"
 
-gem "protected_attributes"
-
 # Make links from text
 gem 'rails_autolink', '~> 1.1'
 
@@ -23,8 +21,8 @@ gem "mysql2", group: :mysql
 gem "pg", group: :postgres
 
 # Auth
-gem "devise", '3.0.4'
-gem "devise-async", '0.8.0'
+gem "devise", '3.2.4'
+gem "devise-async", '0.9.0'
 gem 'omniauth', "~> 1.1.3"
 gem 'omniauth-google-oauth2'
 gem 'omniauth-twitter'
@@ -49,7 +47,6 @@ gem "gitlab-linguist", "~> 3.0.0", require: "linguist"
 
 # API
 gem "grape", "~> 0.6.1"
-# Replace with rubygems when nesteted entities get released
 gem "grape-entity", "~> 0.4.2"
 gem 'rack-cors', require: 'rack/cors'
 

Gemfile.lock

@@ -40,7 +40,7 @@ GEM
     axiom-types (0.0.5)
       descendants_tracker (~> 0.0.1)
       ice_nine (~> 0.9)
-    bcrypt-ruby (3.1.2)
+    bcrypt (3.1.7)
     better_errors (1.0.1)
       coderay (>= 1.0.0)
       erubis (>= 2.6.6)
@@ -94,13 +94,14 @@ GEM
     default_value_for (3.0.0)
       activerecord (>= 3.2.0, < 5.0)
     descendants_tracker (0.0.3)
-    devise (3.0.4)
-      bcrypt-ruby (~> 3.0)
+    devise (3.2.4)
+      bcrypt (~> 3.0)
       orm_adapter (~> 0.1)
       railties (>= 3.2.6, < 5)
+      thread_safe (~> 0.1)
       warden (~> 1.2.3)
-    devise-async (0.8.0)
-      devise (>= 2.2, < 3.2)
+    devise-async (0.9.0)
+      devise (~> 3.2)
     diff-lcs (1.2.5)
     diffy (3.0.3)
     docile (1.1.1)
@@ -175,7 +176,7 @@ GEM
       mime-types (~> 1.19)
     gitlab_emoji (0.0.1.1)
       emoji (~> 1.0.1)
-    gitlab_git (6.0.0)
+    gitlab_git (6.0.1)
       activesupport (~> 4.0)
       charlock_holmes (~> 0.6)
       gitlab-grit (~> 2.6)
@@ -282,7 +283,7 @@ GEM
     method_source (0.8.2)
     mime-types (1.25.1)
     mini_portile (0.6.0)
-    minitest (5.3.4)
+    minitest (5.3.5)
     multi_json (1.10.1)
     multi_xml (0.5.5)
     multipart-post (1.2.0)
@@ -331,8 +332,6 @@ GEM
       websocket-driver (>= 0.2.0)
     polyglot (0.3.4)
     posix-spawn (0.3.8)
-    protected_attributes (1.0.5)
-      activemodel (>= 4.0.1, < 5.0)
     pry (0.9.12.4)
       coderay (~> 1.0)
       method_source (~> 0.8)
@@ -586,8 +585,8 @@ DEPENDENCIES
   d3_rails (~> 3.1.4)
   database_cleaner
   default_value_for (~> 3.0.0)
-  devise (= 3.0.4)
-  devise-async (= 0.8.0)
+  devise (= 3.2.4)
+  devise-async (= 0.9.0)
   diffy (~> 3.0.3)
   dropzonejs-rails
   email_spec
@@ -636,7 +635,6 @@ DEPENDENCIES
   org-ruby
   pg
   poltergeist (~> 1.5.1)
-  protected_attributes
   pry
   quiet_assets (~> 1.0.1)
   rack-attack

app/assets/javascripts/application.js.coffee

@@ -23,7 +23,7 @@
 #= require g.raphael-min
 #= require g.bar-min
 #= require branch-graph
-#= require highlightjs.min
+#= require highlight.pack
 #= require ace/ace
 #= require d3
 #= require underscore

app/assets/javascripts/extensions/array.js

@@ -4,4 +4,4 @@ Array.prototype.first = function() {
 
 Array.prototype.last = function() {
   return this[this.length-1];
-}
+}
\ No newline at end of file

app/assets/javascripts/groups.js.coffee

@@ -14,4 +14,4 @@ $ ->
   $('.js-group-avatar-input').bind "change", ->
     form = $(this).closest("form")
     filename = $(this).val().replace(/^.*[\\\/]/, '')
-    form.find(".js-avatar-filename").text(filename)
+    form.find(".js-avatar-filename").text(filename)
\ No newline at end of file

app/assets/javascripts/markdown_area.js.coffee

@@ -182,4 +182,4 @@ $(document).ready ->
     $(".div-dropzone").click()
     return
 
-  return
+  return
\ No newline at end of file

app/assets/javascripts/notes.js.coffee

@@ -376,7 +376,7 @@ class Notes
   ###
   replyToDiscussionNote: (e) =>
     form = $(".js-new-note-form")
-    replyLink = $(e.target)
+    replyLink = $(e.target).closest(".js-discussion-reply-button")
     replyLink.hide()
 
     # insert the form after the button

app/assets/javascripts/profile.js.coffee

@@ -27,4 +27,4 @@ $ ->
     filename = $(this).val().replace(/^.*[\\\/]/, '')
     form.find(".js-avatar-filename").text(filename)
 
-  $('.profile-groups-avatars').tooltip("placement": "top")
+  $('.profile-groups-avatars').tooltip("placement": "top")
\ No newline at end of file

app/assets/stylesheets/generic/buttons.scss

@@ -152,16 +152,16 @@
   }
 
   &.btn-close {
-    color: #B94A48;
-    font-weight: bold;
+    color: $bg_danger;
+    border-color: $border_danger;
     &:hover {
       color: #B94A48;
     }
   }
 
   &.btn-reopen {
-    color: #468847;
-    font-weight: bold;
+    color: $bg_success;
+    border-color: $border_success;
     &:hover {
       color: #468847;
     }

app/assets/stylesheets/sections/commits.scss

@@ -177,10 +177,18 @@ li.commit {
 
   .commit-row-description {
     font-size: 14px;
-    border-left: 1px solid #e5e5e5;
-    padding: 0 15px 0 7px;
+    border-left: 1px solid #EEE;
+    padding: 10px 15px;
     margin: 5px 0 10px 5px;
+    background: #f9f9f9;
     display: none;
+
+    pre {
+      border: none;
+      background: inherit;
+      padding: 0;
+      margin: 0;
+    }
   }
 
   .commit-row-info {

app/assets/stylesheets/sections/groups.scss

@@ -7,3 +7,7 @@
 .member-search-form {
   float: left;
 }
+
+.milestone-row {
+  @include str-truncated(90%);
+}

app/assets/stylesheets/sections/header.scss

@@ -53,13 +53,9 @@ header {
       font-size: 18px;
 
       .app_logo { margin-left: -15px; }
+
       .title {
-        display: inline-block;
-        overflow: hidden;
-        text-overflow: ellipsis;
-        vertical-align: top;
-        white-space: nowrap;
-        max-width: 70%;
+        @include str-truncated(70%);
       }
 
       .navbar-collapse {
@@ -130,6 +126,7 @@ header {
     margin: 0;
     margin-left: 5px;
     @include header-font;
+    @include str-truncated(37%);
   }
 
   .profile-pic {
@@ -254,7 +251,7 @@ header {
 .search .search-input {
   width: 300px;
   &:focus {
-    width: 400px;
+    width: 330px;
   }
 }
 
@@ -262,7 +259,7 @@ header {
   .search .search-input {
     width: 200px;
     &:focus {
-      width: 300px;
+      width: 230px;
     }
   }
 }

app/assets/stylesheets/sections/tree.scss

@@ -28,6 +28,7 @@
       }
       td {
         border-color: #F1F1F1 !important;
+        border-bottom: 1px solid;
       }
       &:hover {
         td {

app/controllers/admin/broadcast_messages_controller.rb

@@ -6,7 +6,7 @@ class Admin::BroadcastMessagesController < Admin::ApplicationController
   end
 
   def create
-    @broadcast_message = BroadcastMessage.new(params[:broadcast_message])
+    @broadcast_message = BroadcastMessage.new(broadcast_message_params)
 
     if @broadcast_message.save
       redirect_to admin_broadcast_messages_path, notice: 'Broadcast Message was successfully created.'
@@ -29,4 +29,11 @@ class Admin::BroadcastMessagesController < Admin::ApplicationController
   def broadcast_messages
     @broadcast_messages ||= BroadcastMessage.order("starts_at DESC").page(params[:page])
   end
+
+  def broadcast_message_params
+    params.require(:broadcast_message).permit(
+      :alert_type, :color, :ends_at, :font,
+      :message, :starts_at
+    )
+  end
 end

app/controllers/admin/groups_controller.rb

@@ -20,7 +20,7 @@ class Admin::GroupsController < Admin::ApplicationController
   end
 
   def create
-    @group = Group.new(params[:group])
+    @group = Group.new(group_params)
     @group.path = @group.name.dup.parameterize if @group.name
 
     if @group.save
@@ -32,7 +32,7 @@ class Admin::GroupsController < Admin::ApplicationController
   end
 
   def update
-    if @group.update_attributes(params[:group])
+    if @group.update_attributes(group_params)
       redirect_to [:admin, @group], notice: 'Group was successfully updated.'
     else
       render "edit"
@@ -56,4 +56,8 @@ class Admin::GroupsController < Admin::ApplicationController
   def group
     @group = Group.find_by(path: params[:id])
   end
+
+  def group_params
+    params.require(:group).permit(:name, :description, :path, :avatar)
+  end
 end

app/controllers/admin/hooks_controller.rb

@@ -5,7 +5,7 @@ class Admin::HooksController < Admin::ApplicationController
   end
 
   def create
-    @hook = SystemHook.new(params[:hook])
+    @hook = SystemHook.new(hook_params)
 
     if @hook.save
       redirect_to admin_hooks_path, notice: 'Hook was successfully created.'
@@ -37,4 +37,8 @@ class Admin::HooksController < Admin::ApplicationController
 
     redirect_to :back
   end
+
+  def hook_params
+    params.require(:hook).permit(:url)
+  end
 end

app/controllers/admin/users_controller.rb

@@ -13,7 +13,7 @@ class Admin::UsersController < Admin::ApplicationController
   end
 
   def new
-    @user = User.build_user
+    @user = User.new
   end
 
   def edit
@@ -37,15 +37,12 @@ class Admin::UsersController < Admin::ApplicationController
   end
 
   def create
-    admin = params[:user].delete("admin")
-
     opts = {
       force_random_password: true,
       password_expires_at: Time.now
     }
 
-    @user = User.build_user(params[:user].merge(opts), as: :admin)
-    @user.admin = (admin && admin.to_i > 0)
+    @user = User.new(user_params.merge(opts))
     @user.created_by_id = current_user.id
     @user.generate_password
     @user.skip_confirmation!
@@ -62,19 +59,15 @@ class Admin::UsersController < Admin::ApplicationController
   end
 
   def update
-    admin = params[:user].delete("admin")
-
-    if params[:user][:password].blank?
-      params[:user].delete(:password)
-      params[:user].delete(:password_confirmation)
-    end
-
-    if admin.present?
-      user.admin = !admin.to_i.zero?
+    if params[:user][:password].present?
+      user_params.merge(
+        password: params[:user][:password],
+        password_confirmation: params[:user][:password_confirmation],
+      )
     end
 
     respond_to do |format|
-      if user.update_attributes(params[:user], as: :admin)
+      if user.update_attributes(user_params)
         user.confirm!
         format.html { redirect_to [:admin, user], notice: 'User was successfully updated.' }
         format.json { head :ok }
@@ -115,4 +108,13 @@ class Admin::UsersController < Admin::ApplicationController
   def user
     @user ||= User.find_by!(username: params[:id])
   end
+
+  def user_params
+    params.require(:user).permit(
+      :email, :remember_me, :bio, :name, :username,
+      :skype, :linkedin, :twitter, :website_url, :color_scheme_id, :theme_id, :force_random_password,
+      :extern_uid, :provider, :password_expires_at, :avatar, :hide_no_ssh_key,
+      :projects_limit, :can_create_group, :admin
+    )
+  end
 end

app/controllers/application_controller.rb

 require 'gon'
 
 class ApplicationController < ActionController::Base
+  before_filter :authenticate_user_from_token!
   before_filter :authenticate_user!
   before_filter :reject_blocked!
   before_filter :check_password_expiration
@@ -28,6 +29,25 @@ class ApplicationController < ActionController::Base
 
   protected
 
+  # From https://github.com/plataformatec/devise/wiki/How-To:-Simple-Token-Authentication-Example
+  # https://gist.github.com/josevalim/fb706b1e933ef01e4fb6
+  def authenticate_user_from_token!
+    user_token = if params[:authenticity_token].presence
+                   params[:authenticity_token].presence
+                 elsif params[:private_token].presence
+                   params[:private_token].presence
+                 end
+    user = user_token && User.find_by_authentication_token(user_token.to_s)
+
+    if user
+      # Notice we are passing store false, so the user is not
+      # actually stored in the session and a token is needed
+      # for every request. If you want the token to work as a
+      # sign in token, you can simply remove store: false.
+      sign_in user, store: false
+    end
+  end
+
   def log_exception(exception)
     application_trace = ActionDispatch::ExceptionWrapper.new(env, exception).application_trace
     application_trace.map!{ |t| "  #{t}\n" }
@@ -227,8 +247,7 @@ class ApplicationController < ActionController::Base
   end
 
   def configure_permitted_parameters
-    devise_parameter_sanitizer.for(:sign_in) { |u| u.permit(:username, :email, :password, :login, :remember_me) }
-    devise_parameter_sanitizer.for(:sign_up) { |u| u.permit(:username, :email, :name, :password, :password_confirmation) }
+    devise_parameter_sanitizer.sanitize(:sign_in) { |u| u.permit(:username, :email, :password, :login, :remember_me) }
   end
 
   def hexdigest(string)

app/controllers/groups/milestones_controller.rb

+class Groups::MilestonesController < ApplicationController
+  layout 'group'
+
+  before_filter :authorize_group_milestone!, only: :update
+
+  def index
+    project_milestones = case params[:status]
+                         when 'all'; status
+                         when 'closed'; status('closed')
+                         else status('active')
+                         end
+    @group_milestones = Milestones::GroupService.new(project_milestones).execute
+    @group_milestones = Kaminari.paginate_array(@group_milestones).page(params[:page]).per(30)
+  end
+
+  def show
+    project_milestones = Milestone.where(project_id: group.projects).order("due_date ASC")
+    @group_milestone = Milestones::GroupService.new(project_milestones).milestone(title)
+  end
+
+  def update
+    project_milestones = Milestone.where(project_id: group.projects).order("due_date ASC")
+    @group_milestones = Milestones::GroupService.new(project_milestones).milestone(title)
+
+    @group_milestones.milestones.each do |milestone|
+      Milestones::UpdateService.new(milestone.project, current_user, params[:milestone]).execute(milestone)
+    end
+
+    respond_to do |format|
+      format.js
+      format.html do
+        redirect_to group_milestones_path(group)
+      end
+    end
+  end
+
+  private
+
+  def group
+    @group ||= Group.find_by(path: params[:group_id])
+  end
+
+  def title
+    params[:title]
+  end
+
+  def status(state = nil)
+    conditions = { project_id: group.projects }
+    conditions.reverse_merge!(state: state) if state
+    Milestone.where(conditions).order("title ASC")
+  end
+
+  def authorize_group_milestone!
+    return render_404 unless can?(current_user, :manage_group, group)
+  end
+end

app/controllers/groups_controller.rb

@@ -22,7 +22,7 @@ class GroupsController < ApplicationController
   end
 
   def create
-    @group = Group.new(params[:group])
+    @group = Group.new(group_params)
     @group.path = @group.name.dup.parameterize if @group.name
 
     if @group.save
@@ -86,7 +86,7 @@ class GroupsController < ApplicationController
   end
 
   def update
-    if @group.update_attributes(params[:group])
+    if @group.update_attributes(group_params)
       redirect_to edit_group_path(@group), notice: 'Group was successfully updated.'
     else
       render action: "edit"
@@ -161,4 +161,8 @@ class GroupsController < ApplicationController
     params[:state] = 'opened' if params[:state].blank?
     params[:group_id] = @group.id
   end
+
+  def group_params
+    params.require(:group).permit(:name, :description, :path, :avatar, :ldap_access, :ldap_cn)
+  end
 end

app/controllers/profiles/emails_controller.rb

@@ -7,7 +7,7 @@ class Profiles::EmailsController < ApplicationController
   end
 
   def create
-    @email = current_user.emails.new(params[:email])
+    @email = current_user.emails.new(email_params)
 
     flash[:alert] = @email.errors.full_messages.first unless @email.save
 
@@ -23,4 +23,10 @@ class Profiles::EmailsController < ApplicationController
       format.js { render nothing: true }
     end
   end
+
+  private
+
+  def email_params
+    params.require(:email).permit(:email)
+  end
 end

app/controllers/profiles/keys_controller.rb

@@ -15,7 +15,7 @@ class Profiles::KeysController < ApplicationController
   end
 
   def create
-    @key = current_user.keys.new(params[:key])
+    @key = current_user.keys.new(key_params)
 
     if @key.save
       redirect_to profile_key_path(@key)
@@ -53,4 +53,9 @@ class Profiles::KeysController < ApplicationController
     end
   end
 
+  private
+
+  def key_params
+    params.require(:key).permit(:title, :key)
+  end
 end

app/controllers/profiles/passwords_controller.rb

@@ -11,8 +11,8 @@ class Profiles::PasswordsController < ApplicationController
   end
 
   def create
-    new_password = params[:user][:password]
-    new_password_confirmation = params[:user][:password_confirmation]
+    new_password = user_params[:password]
+    new_password_confirmation = user_params[:password_confirmation]
 
     result = @user.update_attributes(
       password: new_password,
@@ -31,11 +31,11 @@ class Profiles::PasswordsController < ApplicationController
   end
 
   def update
-    password_attributes = params[:user].select do |key, value|
+    password_attributes = user_params.select do |key, value|
       %w(password password_confirmation).include?(key.to_s)
     end
 
-    unless @user.valid_password?(params[:user][:current_password])
+    unless @user.valid_password?(user_params[:current_password])
       redirect_to edit_profile_password_path, alert: 'You must provide a valid current password'
       return
     end
@@ -74,4 +74,8 @@ class Profiles::PasswordsController < ApplicationController
   def authorize_change_password!
     return render_404 if @user.ldap_user?
   end
+
+  def user_params
+    params.require(:user).permit(:current_password, :password, :password_confirmation)
+  end
 end

app/controllers/profiles_controller.rb

@@ -14,9 +14,9 @@ class ProfilesController < ApplicationController
   end
 
   def update
-    params[:user].delete(:email) if @user.ldap_user?
+    user_params.except!(:email) if @user.ldap_user?
 
-    if @user.update_attributes(params[:user])
+    if @user.update_attributes(user_params)
       flash[:notice] = "Profile was successfully updated"
     else
       flash[:alert] = "Failed to update profile"
@@ -41,7 +41,7 @@ class ProfilesController < ApplicationController
   end
 
   def update_username
-    @user.update_attributes(username: params[:user][:username])
+    @user.update_attributes(username: user_params[:username])
 
     respond_to do |format|
       format.js
@@ -57,4 +57,12 @@ class ProfilesController < ApplicationController
   def authorize_change_username!
     return render_404 unless @user.can_change_username?
   end
+
+  def user_params
+    params.require(:user).permit(
+      :email, :password, :password_confirmation, :bio, :name, :username,
+      :skype, :linkedin, :twitter, :website_url, :color_scheme_id, :theme_id,
+      :avatar, :hide_no_ssh_key,
+    )
+  end
 end

app/controllers/projects/blob_controller.rb

@@ -30,8 +30,12 @@ class Projects::BlobController < Projects::ApplicationController
   def blob
     @blob ||= @repository.blob_at(@commit.id, @path)
 
-    return not_found! unless @blob
-
-    @blob
+    if @blob
+      @blob
+    elsif tree.entries.any?
+      redirect_to project_tree_path(@project, File.join(@ref, @path)) and return
+    else
+      return not_found!
+    end
   end
 end

app/controllers/projects/deploy_keys_controller.rb

@@ -22,7 +22,7 @@ class Projects::DeployKeysController < Projects::ApplicationController
   end
 
   def create
-    @key = DeployKey.new(params[:deploy_key])
+    @key = DeployKey.new(deploy_key_params)
 
     if @key.valid? && @project.deploy_keys << @key
       redirect_to project_deploy_keys_path(@project)
@@ -58,4 +58,8 @@ class Projects::DeployKeysController < Projects::ApplicationController
   def available_keys
     @available_keys ||= current_user.accessible_deploy_keys
   end
+
+  def deploy_key_params
+    params.require(:deploy_key).permit(:key, :title)
+  end
 end

app/controllers/projects/edit_tree_controller.rb

@@ -28,8 +28,6 @@ class Projects::EditTreeController < Projects::BaseTreeController
 
   def preview
     @content = params[:content]
-    #FIXME workaround https://github.com/gitlabhq/gitlabhq/issues/5936
-    @content += "\n" if @blob.data.end_with?("\n")
 
     diffy = Diffy::Diff.new(@blob.data, @content, diff: '-U 3',
                             include_diff_info: true)

app/controllers/projects/hooks_controller.rb

@@ -12,7 +12,7 @@ class Projects::HooksController < Projects::ApplicationController
   end
 
   def create
-    @hook = @project.hooks.new(params[:hook])
+    @hook = @project.hooks.new(hook_params)
     @hook.save
 
     if @hook.valid?
@@ -40,4 +40,8 @@ class Projects::HooksController < Projects::ApplicationController
   def hook
     @hook ||= @project.hooks.find(params[:id])
   end
+
+  def hook_params
+    params.require(:hook).permit(:url, :push_events, :issues_events, :merge_requests_events, :tag_push_events)
+  end
 end

app/controllers/projects/issues_controller.rb

@@ -42,7 +42,11 @@ class Projects::IssuesController < Projects::ApplicationController
   end
 
   def new
-    @issue = @project.issues.new(params[:issue])
+    params[:issue] ||= ActionController::Parameters.new(
+      assignee_id: ""
+    )
+
+    @issue = @project.issues.new(issue_params)
     respond_with(@issue)
   end
 
@@ -59,7 +63,7 @@ class Projects::IssuesController < Projects::ApplicationController
   end
 
   def create
-    @issue = Issues::CreateService.new(project, current_user, params[:issue]).execute
+    @issue = Issues::CreateService.new(project, current_user, issue_params).execute
 
     respond_to do |format|
       format.html do
@@ -76,7 +80,7 @@ class Projects::IssuesController < Projects::ApplicationController
   end
 
   def update
-    @issue = Issues::UpdateService.new(project, current_user, params[:issue]).execute(issue)
+    @issue = Issues::UpdateService.new(project, current_user, issue_params).execute(issue)
 
     respond_to do |format|
       format.js
@@ -144,4 +148,11 @@ class Projects::IssuesController < Projects::ApplicationController
       raise ActiveRecord::RecordNotFound.new
     end
   end
+
+  def issue_params
+    params.require(:issue).permit(
+      :title, :assignee_id, :position, :description,
+      :milestone_id, :label_list, :state_event
+    )
+  end
 end

app/controllers/projects/merge_requests_controller.rb

@@ -60,7 +60,11 @@ class Projects::MergeRequestsController < Projects::ApplicationController
   end
 
   def new
-    @merge_request = MergeRequest.new(params[:merge_request])
+    params[:merge_request] ||= ActionController::Parameters.new(
+      source_project: @project
+    )
+
+    @merge_request = MergeRequest.new(merge_request_params)
     @merge_request.source_project = @project unless @merge_request.source_project
     @merge_request.target_project ||= (@project.forked_from_project || @project)
     @target_branches = @merge_request.target_project.nil? ? [] : @merge_request.target_project.repository.branch_names
@@ -111,7 +115,7 @@ class Projects::MergeRequestsController < Projects::ApplicationController
 
   def create
     @target_branches ||= []
-    @merge_request = MergeRequests::CreateService.new(project, current_user, params[:merge_request]).execute
+    @merge_request = MergeRequests::CreateService.new(project, current_user, merge_request_params).execute
 
     if @merge_request.valid?
       redirect_to project_merge_request_path(@merge_request.target_project, @merge_request), notice: 'Merge request was successfully created.'
@@ -123,7 +127,7 @@ class Projects::MergeRequestsController < Projects::ApplicationController
   end
 
   def update
-    @merge_request = MergeRequests::UpdateService.new(project, current_user, params[:merge_request]).execute(@merge_request)
+    @merge_request = MergeRequests::UpdateService.new(project, current_user, merge_request_params).execute(@merge_request)
 
     if @merge_request.valid?
       respond_to do |format|
@@ -264,4 +268,12 @@ class Projects::MergeRequestsController < Projects::ApplicationController
 
     can?(current_user, action, project)
   end
+
+  def merge_request_params
+    params.require(:merge_request).permit(
+      :title, :assignee_id, :source_project_id, :source_branch,
+      :target_project_id, :target_branch, :milestone_id,
+      :state_event, :description, :label_list
+    )
+  end
 end

app/controllers/projects/milestones_controller.rb

@@ -37,7 +37,7 @@ class Projects::MilestonesController < Projects::ApplicationController
   end
 
   def create
-    @milestone = Milestones::CreateService.new(project, current_user, params[:milestone]).execute
+    @milestone = Milestones::CreateService.new(project, current_user, milestone_params).execute
 
     if @milestone.save
       redirect_to project_milestone_path(@project, @milestone)
@@ -47,7 +47,7 @@ class Projects::MilestonesController < Projects::ApplicationController
   end
 
   def update
-    @milestone = Milestones::UpdateService.new(project, current_user, params[:milestone]).execute(milestone)
+    @milestone = Milestones::UpdateService.new(project, current_user, milestone_params).execute(milestone)
 
     respond_to do |format|
       format.js
@@ -105,4 +105,8 @@ class Projects::MilestonesController < Projects::ApplicationController
   def module_enabled
     return render_404 unless @project.issues_enabled
   end
+
+  def milestone_params
+    params.require(:milestone).permit(:title, :description, :due_date, :state_event)
+  end
 end

app/controllers/projects/notes_controller.rb

@@ -21,7 +21,7 @@ class Projects::NotesController < Projects::ApplicationController
   end
 
   def create
-    @note = Notes::CreateService.new(project, current_user, params[:note]).execute
+    @note = Notes::CreateService.new(project, current_user, note_params).execute
 
     respond_to do |format|
       format.json { render_note_json(@note) }
@@ -30,7 +30,7 @@ class Projects::NotesController < Projects::ApplicationController
   end
 
   def update
-    note.update_attributes(params[:note])
+    note.update_attributes(note_params)
     note.reset_events_cache
 
     respond_to do |format|
@@ -109,4 +109,11 @@ class Projects::NotesController < Projects::ApplicationController
   def authorize_admin_note!
     return access_denied! unless can?(current_user, :admin_note, note)
   end
+
+  def note_params
+    params.require(:note).permit(
+      :note, :noteable, :noteable_id, :noteable_type, :project_id,
+      :attachment, :line_code, :commit_id
+    )
+  end
 end

app/controllers/projects/protected_branches_controller.rb

@@ -11,7 +11,7 @@ class Projects::ProtectedBranchesController < Projects::ApplicationController
   end
 
   def create
-    @project.protected_branches.create(params[:protected_branch])
+    @project.protected_branches.create(protected_branch_params)
     redirect_to project_protected_branches_path(@project)
   end
 
@@ -23,4 +23,10 @@ class Projects::ProtectedBranchesController < Projects::ApplicationController
       format.js { render nothing: true }
     end
   end
+
+  private
+
+  def protected_branch_params
+    params.require(:protected_branch).permit(:name)
+  end
 end

app/controllers/projects/repositories_controller.rb

@@ -22,6 +22,7 @@ class Projects::RepositoriesController < Projects::ApplicationController
 
     if file_path
       # Send file to user
+      response.headers["Content-Length"] = File.open(file_path).size.to_s
       send_file file_path
     else
       render_404

app/controllers/projects/services_controller.rb

@@ -16,7 +16,7 @@ class Projects::ServicesController < Projects::ApplicationController
   end
 
   def update
-    if @service.update_attributes(params[:service])
+    if @service.update_attributes(service_params)
       redirect_to edit_project_service_path(@project, @service.to_param)
     else
       render 'edit'
@@ -36,4 +36,11 @@ class Projects::ServicesController < Projects::ApplicationController
   def service
     @service ||= @project.services.find { |service| service.to_param == params[:id] }
   end
+
+  def service_params
+    params.require(:service).permit(
+      :title, :token, :type, :active, :api_key, :subdomain,
+      :room, :recipients, :project_url
+    )
+  end
 end

app/controllers/projects/snippets_controller.rb

@@ -25,7 +25,7 @@ class Projects::SnippetsController < Projects::ApplicationController
   end
 
   def create
-    @snippet = @project.snippets.build(params[:project_snippet])
+    @snippet = @project.snippets.build(snippet_params)
     @snippet.author = current_user
 
     if @snippet.save
@@ -39,7 +39,7 @@ class Projects::SnippetsController < Projects::ApplicationController
   end
 
   def update
-    if @snippet.update_attributes(params[:project_snippet])
+    if @snippet.update_attributes(snippet_params)
       redirect_to project_snippet_path(@project, @snippet)
     else
       respond_with(@snippet)
@@ -86,4 +86,8 @@ class Projects::SnippetsController < Projects::ApplicationController
   def module_enabled
     return render_404 unless @project.snippets_enabled
   end
+
+  def snippet_params
+    params.require(:project_snippet).permit(:title, :content, :file_name, :private)
+  end
 end

app/controllers/projects/team_members_controller.rb

@@ -27,7 +27,7 @@ class Projects::TeamMembersController < Projects::ApplicationController
 
   def update
     @user_project_relation = project.users_projects.find_by(user_id: member)
-    @user_project_relation.update_attributes(params[:team_member])
+    @user_project_relation.update_attributes(member_params)
 
     unless @user_project_relation.valid?
       flash[:alert] = "User should have at least one role"
@@ -67,4 +67,8 @@ class Projects::TeamMembersController < Projects::ApplicationController
   def member
     @member ||= User.find_by(username: params[:id])
   end
+
+  def member_params
+    params.require(:team_member).permit(:user_id, :project_access)
+  end
 end

app/controllers/projects/tree_controller.rb

 # Controller for viewing a repository's file structure
 class Projects::TreeController < Projects::BaseTreeController
   def show
-    return not_found! if tree.entries.empty?
+
+    if tree.entries.empty?
+      if @repository.blob_at(@commit.id, @path)
+        redirect_to project_blob_path(@project, File.join(@ref, @path)) and return
+      else
+        return not_found!
+      end
+    end
 
     respond_to do |format|
       format.html

app/controllers/projects_controller.rb

@@ -20,7 +20,7 @@ class ProjectsController < ApplicationController
   end
 
   def create
-    @project = ::Projects::CreateService.new(current_user, params[:project]).execute
+    @project = ::Projects::CreateService.new(current_user, project_params).execute
     flash[:notice] = 'Project was successfully created.' if @project.saved?
 
     respond_to do |format|
@@ -29,7 +29,7 @@ class ProjectsController < ApplicationController
   end
 
   def update
-    status = ::Projects::UpdateService.new(@project, current_user, params).execute
+    status = ::Projects::UpdateService.new(@project, current_user, project_params).execute
 
     respond_to do |format|
       if status
@@ -44,7 +44,7 @@ class ProjectsController < ApplicationController
   end
 
   def transfer
-    ::Projects::TransferService.new(project, current_user, params[:project]).execute
+    ::Projects::TransferService.new(project, current_user, project_params).execute
   end
 
   def show
@@ -85,7 +85,7 @@ class ProjectsController < ApplicationController
       redirect_to import_project_path(@project)
     end
 
-    @project.import_url = params[:project][:import_url]
+    @project.import_url = project_params[:import_url]
 
     if @project.save
       @project.reload
@@ -185,4 +185,12 @@ class ProjectsController < ApplicationController
   def user_layout
     current_user ? "projects" : "public_projects"
   end
+
+  def project_params
+    params.require(:project).permit(
+      :name, :path, :description, :issues_tracker, :label_list,
+      :issues_enabled, :merge_requests_enabled, :snippets_enabled, :issues_tracker_id,
+      :wiki_enabled, :visibility_level, :import_url, :last_activity_at, :namespace_id, :merge_requests_template
+    )
+  end
 end

app/controllers/registrations_controller.rb

@@ -13,7 +13,14 @@ class RegistrationsController < Devise::RegistrationsController
 
   def build_resource(hash=nil)
     super
-    self.resource.with_defaults
+  end
+
+  def after_sign_up_path_for resource
+    new_user_session_path
+  end
+
+  def after_inactive_sign_up_path_for resource
+    new_user_session_path
   end
 
   private
@@ -21,4 +28,8 @@ class RegistrationsController < Devise::RegistrationsController
   def signup_enabled?
     redirect_to new_user_session_path unless Gitlab.config.gitlab.signup_enabled
   end
+
+  def sign_up_params
+    params.require(:user).permit(:username, :email, :name, :password, :password_confirmation)
+  end
 end

app/controllers/snippets_controller.rb

@@ -51,7 +51,7 @@ class SnippetsController < ApplicationController
   end
 
   def create
-    @snippet = PersonalSnippet.new(params[:personal_snippet])
+    @snippet = PersonalSnippet.new(snippet_params)
     @snippet.author = current_user
 
     if @snippet.save
@@ -65,7 +65,7 @@ class SnippetsController < ApplicationController
   end
 
   def update
-    if @snippet.update_attributes(params[:personal_snippet])
+    if @snippet.update_attributes(snippet_params)
       redirect_to snippet_path(@snippet)
     else
       respond_with @snippet
@@ -109,4 +109,8 @@ class SnippetsController < ApplicationController
   def set_title
     @title = 'Snippets'
   end
+
+  def snippet_params
+    params.require(:personal_snippet).permit(:title, :content, :file_name, :private)
+  end
 end

app/controllers/users_groups_controller.rb

@@ -14,7 +14,7 @@ class UsersGroupsController < ApplicationController
 
   def update
     @member = @group.users_groups.find(params[:id])
-    @member.update_attributes(params[:users_group])
+    @member.update_attributes(member_params)
   end
 
   def destroy
@@ -41,4 +41,8 @@ class UsersGroupsController < ApplicationController
       return render_404
     end
   end
+
+  def member_params
+    params.require(:users_group).permit(:group_access, :user_id)
+  end
 end

app/finders/notes_finder.rb

@@ -14,7 +14,7 @@ class NotesFinder
       project.issues.find(target_id).notes.inc_author.fresh
     when "merge_request"
       project.merge_requests.find(target_id).mr_and_commit_notes.inc_author.fresh
-    when "snippet"
+    when "snippet", "project_snippet"
       project.snippets.find(target_id).notes.fresh
     else
       raise 'invalid target_type'

app/helpers/commits_helper.rb

@@ -180,6 +180,17 @@ module CommitsHelper
     return old_lines, new_lines
   end
 
+  def link_to_browse_code(project, commit)
+    if current_controller?(:projects, :commits)
+      if @repo.blob_at(commit.id, @path)
+        return link_to "Browse File »", project_blob_path(project, tree_join(commit.id, @path)), class: "pull-right"
+      elsif @path.present?
+        return link_to "Browse Dir »", project_tree_path(project, tree_join(commit.id, @path)), class: "pull-right"
+      end
+    end
+    link_to "Browse Code »", project_tree_path(project, commit), class: "pull-right"
+  end
+
   protected
 
   # Private: Returns a link to a person. If the person has a matching user and

app/helpers/dashboard_helper.rb

@@ -35,4 +35,42 @@ module DashboardHelper
     path << "?#{options.to_param}"
     path
   end
+
+  def assigned_entities_count(current_user, entity, scope = nil)
+    items = current_user.send("assigned_" + entity.pluralize).opened
+
+    if scope.kind_of?(Group)
+      items = items.of_group(scope)
+    elsif scope.kind_of?(Project)
+      items = items.of_projects(scope)
+    end
+
+    items.count
+  end
+
+  def authored_entities_count(current_user, entity, scope = nil)
+    items = current_user.send(entity.pluralize).opened
+
+    if scope.kind_of?(Group)
+      items = items.of_group(scope)
+    elsif scope.kind_of?(Project)
+      items = items.of_projects(scope)
+    end
+
+    items.count
+  end
+
+  def authorized_entities_count(current_user, entity, scope = nil)
+    items = entity.classify.constantize.opened
+
+    if scope.kind_of?(Group)
+      items = items.of_group(scope)
+    elsif scope.kind_of?(Project)
+      items = items.of_projects(scope)
+    else
+      items = items.of_projects(current_user.authorized_projects)
+    end
+
+    items.count
+  end
 end

app/helpers/events_helper.rb

@@ -64,7 +64,16 @@ module EventsHelper
       project_issue_url(event.project, event.issue)
     elsif event.merge_request?
       project_merge_request_url(event.project, event.merge_request)
-
+    elsif event.note?
+      if event.note_target
+        if event.note_commit?
+          project_commit_path(event.project, event.note_commit_id, anchor: dom_id(event.target))
+        elsif event.note_project_snippet?
+          project_snippet_path(event.project, event.note_target)
+        else
+          event_note_target_path(event)
+        end
+      end
     elsif event.push?
       if event.push_with_commits?
         if event.commits_count > 1
@@ -83,6 +92,10 @@ module EventsHelper
       render "events/event_issue", issue: event.issue
     elsif event.push?
       render "events/event_push", event: event
+    elsif event.merge_request?
+      render "events/event_merge_request", merge_request: event.merge_request
+    elsif event.note?
+      render "events/event_note", note: event.note
     end
   end
 

app/helpers/gitlab_markdown_helper.rb

@@ -138,7 +138,7 @@ module GitlabMarkdownHelper
   # If we are at doc/api/README.md and the README.md contains relative links like [Users](users.md)
   # this takes the request path(doc/api/README.md), and replaces the README.md with users.md so the path looks like doc/api/users.md
   # If we are at doc/api and the README.md shown in below the tree view
-  # this takes the rquest path(doc/api) and adds users.md so the path looks like doc/api/users.md
+  # this takes the request path(doc/api) and adds users.md so the path looks like doc/api/users.md
   def build_nested_path(path, request_path)
     return request_path if path == ""
     return path unless request_path

app/helpers/groups_helper.rb

@@ -31,6 +31,17 @@ module GroupsHelper
             end
 
     title
+  end
+
+  def group_filter_path(entity, options={})
+    exist_opts = {
+      status: params[:status]
+    }
+
+    options = exist_opts.merge(options)
 
+    path = request.path
+    path << "?#{options.to_param}"
+    path
   end
 end

app/mailers/emails/issues.rb

@@ -4,10 +4,10 @@ module Emails
       @issue = Issue.find(issue_id)
       @project = @issue.project
       @target_url = project_issue_url(@project, @issue)
-      set_message_id("issue_#{issue_id}")
-      mail(from: sender(@issue.author_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@issue.title} (##{@issue.iid})"))
+      mail_new_thread(@issue,
+                      from: sender(@issue.author_id),
+                      to: recipient(recipient_id),
+                      subject: subject("#{@issue.title} (##{@issue.iid})"))
     end
 
     def reassigned_issue_email(recipient_id, issue_id, previous_assignee_id, updated_by_user_id)
@@ -15,10 +15,10 @@ module Emails
       @previous_assignee = User.find_by(id: previous_assignee_id) if previous_assignee_id
       @project = @issue.project
       @target_url = project_issue_url(@project, @issue)
-      set_reference("issue_#{issue_id}")
-      mail(from: sender(updated_by_user_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@issue.title} (##{@issue.iid})"))
+      mail_answer_thread(@issue,
+                         from: sender(updated_by_user_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@issue.title} (##{@issue.iid})"))
     end
 
     def closed_issue_email(recipient_id, issue_id, updated_by_user_id)
@@ -26,10 +26,10 @@ module Emails
       @project = @issue.project
       @updated_by = User.find updated_by_user_id
       @target_url = project_issue_url(@project, @issue)
-      set_reference("issue_#{issue_id}")
-      mail(from: sender(updated_by_user_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@issue.title} (##{@issue.iid})"))
+      mail_answer_thread(@issue,
+                         from: sender(updated_by_user_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@issue.title} (##{@issue.iid})"))
     end
 
     def issue_status_changed_email(recipient_id, issue_id, status, updated_by_user_id)
@@ -38,10 +38,10 @@ module Emails
       @project = @issue.project
       @updated_by = User.find updated_by_user_id
       @target_url = project_issue_url(@project, @issue)
-      set_reference("issue_#{issue_id}")
-      mail(from: sender(updated_by_user_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@issue.title} (##{@issue.iid})"))
+      mail_answer_thread(@issue,
+                         from: sender(updated_by_user_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@issue.title} (##{@issue.iid})"))
     end
   end
 end

app/mailers/emails/merge_requests.rb

@@ -4,10 +4,10 @@ module Emails
       @merge_request = MergeRequest.find(merge_request_id)
       @project = @merge_request.project
       @target_url = project_merge_request_url(@project, @merge_request)
-      set_message_id("merge_request_#{merge_request_id}")
-      mail(from: sender(@merge_request.author_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
+      mail_new_thread(@merge_request,
+                      from: sender(@merge_request.author_id),
+                      to: recipient(recipient_id),
+                      subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
     end
 
     def reassigned_merge_request_email(recipient_id, merge_request_id, previous_assignee_id, updated_by_user_id)
@@ -15,10 +15,10 @@ module Emails
       @previous_assignee = User.find_by(id: previous_assignee_id) if previous_assignee_id
       @project = @merge_request.project
       @target_url = project_merge_request_url(@project, @merge_request)
-      set_reference("merge_request_#{merge_request_id}")
-      mail(from: sender(updated_by_user_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
+      mail_answer_thread(@merge_request,
+                         from: sender(updated_by_user_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
     end
 
     def closed_merge_request_email(recipient_id, merge_request_id, updated_by_user_id)
@@ -26,20 +26,32 @@ module Emails
       @updated_by = User.find updated_by_user_id
       @project = @merge_request.project
       @target_url = project_merge_request_url(@project, @merge_request)
-      set_reference("merge_request_#{merge_request_id}")
-      mail(from: sender(updated_by_user_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
+      mail_answer_thread(@merge_request,
+                         from: sender(updated_by_user_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
     end
 
     def merged_merge_request_email(recipient_id, merge_request_id, updated_by_user_id)
       @merge_request = MergeRequest.find(merge_request_id)
       @project = @merge_request.project
       @target_url = project_merge_request_url(@project, @merge_request)
+      mail_answer_thread(@merge_request,
+                         from: sender(updated_by_user_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
+    end
+
+    def merge_request_status_email(recipient_id, merge_request_id, status, updated_by_user_id)
+      @merge_request = MergeRequest.find(merge_request_id)
+      @mr_status = status
+      @project = @merge_request.project
+      @updated_by = User.find updated_by_user_id
+      @target_url = project_merge_request_url(@project, @merge_request)
       set_reference("merge_request_#{merge_request_id}")
       mail(from: sender(updated_by_user_id),
            to: recipient(recipient_id),
-           subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
+           subject: subject("#{@merge_request.title} (##{@merge_request.iid}) #{@mr_status}"))
     end
   end
 

app/mailers/emails/notes.rb

@@ -5,9 +5,10 @@ module Emails
       @commit = @note.noteable
       @project = @note.project
       @target_url = project_commit_url(@project, @commit, anchor: "note_#{@note.id}")
-      mail(from: sender(@note.author_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@commit.title} (#{@commit.short_id})"))
+      mail_answer_thread(@commit,
+                         from: sender(@note.author_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@commit.title} (#{@commit.short_id})"))
     end
 
     def note_issue_email(recipient_id, note_id)
@@ -15,10 +16,10 @@ module Emails
       @issue = @note.noteable
       @project = @note.project
       @target_url = project_issue_url(@project, @issue, anchor: "note_#{@note.id}")
-      set_reference("issue_#{@issue.id}")
-      mail(from: sender(@note.author_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@issue.title} (##{@issue.iid})"))
+      mail_answer_thread(@issue,
+                         from: sender(@note.author_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@issue.title} (##{@issue.iid})"))
     end
 
     def note_merge_request_email(recipient_id, note_id)
@@ -26,10 +27,10 @@ module Emails
       @merge_request = @note.noteable
       @project = @note.project
       @target_url = project_merge_request_url(@project, @merge_request, anchor: "note_#{@note.id}")
-      set_reference("merge_request_#{@merge_request.id}")
-      mail(from: sender(@note.author_id),
-           to: recipient(recipient_id),
-           subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
+      mail_answer_thread(@merge_request,
+                         from: sender(@note.author_id),
+                         to: recipient(recipient_id),
+                         subject: subject("#{@merge_request.title} (##{@merge_request.iid})"))
     end
   end
 end

app/mailers/notify.rb

 class Notify < ActionMailer::Base
+  include ActionDispatch::Routing::PolymorphicRoutes
+
   include Emails::Issues
   include Emails::MergeRequests
   include Emails::Notes
@@ -53,14 +55,6 @@ class Notify < ActionMailer::Base
     end
   end
 
-  # Set the Message-ID header field
-  #
-  # local_part - The local part of the message ID
-  #
-  def set_message_id(local_part)
-    headers["Message-ID"] = "<#{local_part}@#{Gitlab.config.gitlab.host}>"
-  end
-
   # Set the References header field
   #
   # local_part - The local part of the referenced message ID
@@ -93,4 +87,40 @@ class Notify < ActionMailer::Base
     subject << extra.join(' | ') if extra.present?
     subject
   end
+
+  # Return a string suitable for inclusion in the 'Message-Id' mail header.
+  #
+  # The message-id is generated from the unique URL to a model object.
+  def message_id(model)
+    model_name = model.class.model_name.singular_route_key
+    "<#{model_name}_#{model.id}@#{Gitlab.config.gitlab.host}>"
+  end
+
+  # Send an email that starts a new conversation thread,
+  # with headers suitable for grouping by thread in email clients.
+  #
+  # See: mail_answer_thread
+  def mail_new_thread(model, headers = {}, &block)
+    headers['Message-ID'] = message_id(model)
+    mail(headers, &block)
+  end
+
+  # Send an email that responds to an existing conversation thread,
+  # with headers suitable for grouping by thread in email clients.
+  #
+  # For grouping emails by thread, email clients heuristics require the answers to:
+  #
+  #  * have a subject that begin by 'Re: '
+  #  * have a 'In-Reply-To' or 'References' header that references the original 'Message-ID'
+  #
+  def mail_answer_thread(model, headers = {}, &block)
+    headers['In-Reply-To'] = message_id(model)
+    headers['References'] = message_id(model)
+
+    if (headers[:subject])
+      headers[:subject].prepend('Re: ')
+    end
+
+    mail(headers, &block)
+  end
 end

app/models/broadcast_message.rb

@@ -14,8 +14,6 @@
 #
 
 class BroadcastMessage < ActiveRecord::Base
-  attr_accessible :alert_type, :color, :ends_at, :font, :message, :starts_at
-
   validates :message, presence: true
   validates :starts_at, presence: true
   validates :ends_at, presence: true

app/models/concerns/token_authenticatable.rb

+module TokenAuthenticatable
+  extend ActiveSupport::Concern
+
+  module ClassMethods
+    def find_by_authentication_token(authentication_token = nil)
+      if authentication_token
+        where(authentication_token: authentication_token).first
+      end
+    end
+  end
+
+  def ensure_authentication_token
+    if authentication_token.blank?
+      self.authentication_token = generate_authentication_token
+    end
+  end
+
+  def reset_authentication_token!
+    self.authentication_token = generate_authentication_token
+    save
+  end
+
+  private
+
+  def generate_authentication_token
+    loop do
+      token = Devise.friendly_token
+      break token unless self.class.unscoped.where(authentication_token: token).first
+    end
+  end
+end

app/models/deploy_keys_project.rb

@@ -10,13 +10,10 @@
 #
 
 class DeployKeysProject < ActiveRecord::Base
-  attr_accessible :key_id, :project_id
-
   belongs_to :project
   belongs_to :deploy_key
 
   validates :deploy_key_id, presence: true
   validates :deploy_key_id, uniqueness: { scope: [:project_id], message: "already exists in project" }
-
   validates :project_id, presence: true
 end

app/models/email.rb

@@ -10,16 +10,8 @@
 #
 
 class Email < ActiveRecord::Base
-  attr_accessible :email, :user_id
-
-  #
-  # Relations
-  #
   belongs_to :user
 
-  #
-  # Validations
-  #
   validates :user_id, presence: true
   validates :email, presence: true, email: { strict_mode: true }, uniqueness: true
   validate :unique_email, if: ->(email) { email.email_changed? }

app/models/event.rb

@@ -15,9 +15,6 @@
 #
 
 class Event < ActiveRecord::Base
-  attr_accessible :project, :action, :data, :author_id, :project_id,
-                  :target_id, :target_type
-
   default_scope { where.not(author_id: nil) }
 
   CREATED   = 1
@@ -33,6 +30,7 @@ class Event < ActiveRecord::Base
   delegate :name, :email, to: :author, prefix: true, allow_nil: true
   delegate :title, to: :issue, prefix: true, allow_nil: true
   delegate :title, to: :merge_request, prefix: true, allow_nil: true
+  delegate :title, to: :note, prefix: true, allow_nil: true
 
   belongs_to :author, class_name: "User"
   belongs_to :project
@@ -150,6 +148,10 @@ class Event < ActiveRecord::Base
     target if target_type == "MergeRequest"
   end
 
+  def note
+    target if target_type == "Note"
+  end
+
   def action_name
     if closed?
       "closed"

app/models/forked_project_link.rb

@@ -10,10 +10,6 @@
 #
 
 class ForkedProjectLink < ActiveRecord::Base
-  attr_accessible :forked_from_project_id, :forked_to_project_id
-
-  # Relations
   belongs_to :forked_to_project, class_name: Project
   belongs_to :forked_from_project, class_name: Project
-
 end

app/models/group.rb

@@ -19,19 +19,14 @@ require 'file_size_validator'
 class Group < Namespace
   has_many :users_groups, dependent: :destroy
   has_many :users, through: :users_groups
-
   has_many :project_group_links, dependent: :destroy
   has_many :shared_projects, through: :project_group_links, source: :project
 
-  attr_accessible :ldap_cn, :ldap_access
-
   validates :ldap_access,
     inclusion: { in: UsersGroup.group_access_roles.values },
     presence: true,
     if: ->(group) { group.ldap_cn.present? }
 
-  attr_accessible :avatar
-
   validate :avatar_type, if: ->(user) { user.avatar_changed? }
   validates :avatar, file_size: { maximum: 100.kilobytes.to_i }
 

app/models/group_milestone.rb

+class GroupMilestone
+
+  def initialize(title, milestones)
+    @title = title
+    @milestones = milestones
+  end
+
+  def title
+    @title
+  end
+
+  def safe_title
+    @title.parameterize
+  end
+
+  def milestones
+    @milestones
+  end
+
+  def projects
+    milestones.map { |milestone| milestone.project }
+  end
+
+  def issue_count
+    milestones.map { |milestone| milestone.issues.count }.sum
+  end
+
+  def merge_requests_count
+    milestones.map { |milestone| milestone.merge_requests.count }.sum
+  end
+
+  def open_items_count
+    milestones.map { |milestone| milestone.open_items_count }.sum
+  end
+
+  def closed_items_count
+    milestones.map { |milestone| milestone.closed_items_count }.sum
+  end
+
+  def total_items_count
+    milestones.map { |milestone| milestone.total_items_count }.sum
+  end
+
+  def percent_complete
+    ((closed_items_count * 100) / total_items_count).abs
+  rescue ZeroDivisionError
+    100
+  end
+
+  def state
+    state = milestones.map { |milestone| milestone.state }
+
+    if state.count('active') == state.size
+      'active'
+    else
+      'closed'
+    end
+  end
+
+  def active?
+    state == 'active'
+  end
+
+  def closed?
+    state == 'closed'
+  end
+
+  def issues
+    @group_issues ||= milestones.map { |milestone| milestone.issues }.flatten.group_by(&:state)
+  end
+
+  def merge_requests
+    @group_merge_requests ||= milestones.map { |milestone| milestone.merge_requests }.flatten.group_by(&:state)
+  end
+
+  def participants
+    milestones.map { |milestone| milestone.participants.uniq }.reject(&:empty?).flatten
+  end
+
+  def opened_issues
+    issues.values_at("opened", "reopened").compact.flatten
+  end
+
+  def closed_issues
+    issues['closed']
+  end
+
+  def opened_merge_requests
+    merge_requests.values_at("opened", "reopened").compact.flatten
+  end
+
+  def closed_merge_requests
+    merge_requests.values_at("closed", "merged", "locked").compact.flatten
+  end
+end

app/models/issue.rb

@@ -33,9 +33,6 @@ class Issue < ActiveRecord::Base
   scope :of_group, ->(group) { where(project_id: group.project_ids) }
   scope :of_user_team, ->(team) { where(project_id: team.project_ids, assignee_id: team.member_ids) }
 
-  attr_accessible :title, :assignee_id, :position, :description,
-                  :milestone_id, :label_list, :state_event
-
   acts_as_taggable_on :labels
 
   scope :cared, ->(user) { where(assignee_id: user) }

app/models/key.rb

@@ -19,8 +19,6 @@ class Key < ActiveRecord::Base
 
   belongs_to :user
 
-  attr_accessible :key, :title
-
   before_validation :strip_white_space, :generate_fingerpint
 
   validates :title, presence: true, length: { within: 0..255 }

app/models/merge_request.rb

@@ -36,10 +36,6 @@ class MergeRequest < ActiveRecord::Base
 
   delegate :commits, :diffs, :last_commit, :last_commit_short_sha, to: :merge_request_diff, prefix: nil
 
-  attr_accessible :title, :assignee_id, :source_project_id, :source_branch,
-                  :target_project_id, :target_branch, :milestone_id,
-                  :state_event, :description, :label_list
-
   attr_accessor :should_remove_source_branch
 
   # When this attribute is true some MR validation is ignored
@@ -62,11 +58,11 @@ class MergeRequest < ActiveRecord::Base
       transition closed: :reopened
     end
 
-    event :lock do
+    event :lock_mr do
       transition [:reopened, :opened] => :locked
     end
 
-    event :unlock do
+    event :unlock_mr do
       transition locked: :reopened
     end
 
@@ -297,6 +293,8 @@ class MergeRequest < ActiveRecord::Base
     message << title.to_s
     message << "\n\n"
     message << description.to_s
+    message << "\n\n"
+    message << "See merge request !#{iid}"
     message
   end
 

app/models/merge_request_diff.rb

@@ -22,8 +22,6 @@ class MergeRequestDiff < ActiveRecord::Base
 
   belongs_to :merge_request
 
-  attr_accessible :state, :st_commits, :st_diffs
-
   delegate :target_branch, :source_branch, to: :merge_request, prefix: nil
 
   state_machine :state, initial: :empty do

app/models/milestone.rb

@@ -16,8 +16,6 @@
 class Milestone < ActiveRecord::Base
   include InternalId
 
-  attr_accessible :title, :description, :due_date, :state_event
-
   belongs_to :project
   has_many :issues
   has_many :merge_requests

app/models/namespace.rb

@@ -16,8 +16,6 @@
 class Namespace < ActiveRecord::Base
   include Gitlab::ShellAdapter
 
-  attr_accessible :name, :description, :path
-
   has_many :projects, dependent: :destroy
   belongs_to :owner, class_name: "User"
 
@@ -25,12 +23,12 @@ class Namespace < ActiveRecord::Base
   validates :name, presence: true, uniqueness: true,
             length: { within: 0..255 },
             format: { with: Gitlab::Regex.name_regex,
-                      message: "only letters, digits, spaces & '_' '-' '.' allowed." }
+                      message: Gitlab::Regex.name_regex_message }
   validates :description, length: { within: 0..255 }
   validates :path, uniqueness: { case_sensitive: false }, presence: true, length: { within: 1..255 },
             exclusion: { in: Gitlab::Blacklist.path },
             format: { with: Gitlab::Regex.path_regex,
-                      message: "only letters, digits & '_' '-' '.' allowed. Letter should be first" }
+                      message: Gitlab::Regex.path_regex_message }
 
   delegate :name, to: :owner, allow_nil: true, prefix: true
 

app/models/note.rb

@@ -25,8 +25,6 @@ class Note < ActiveRecord::Base
 
   default_value_for :system, false
 
-  attr_accessible :note, :noteable, :noteable_id, :noteable_type, :project_id,
-                  :attachment, :line_code, :commit_id
   attr_mentionable :note
 
   belongs_to :project
@@ -63,13 +61,13 @@ class Note < ActiveRecord::Base
     def create_status_change_note(noteable, project, author, status, source)
       body = "_Status changed to #{status}#{' by ' + source.gfm_reference if source}_"
 
-      create({
+      create(
         noteable: noteable,
         project: project,
         author: author,
         note: body,
         system: true
-      }, without_protection: true)
+      )
     end
 
     # +noteable+ was referenced from +mentioner+, by including GFM in either +mentioner+'s description or an associated Note.
@@ -88,7 +86,7 @@ class Note < ActiveRecord::Base
         note_options.merge!(noteable: noteable)
       end
 
-      create(note_options, without_protection: true)
+      create(note_options)
     end
 
     def create_milestone_change_note(noteable, project, author, milestone)
@@ -98,13 +96,13 @@ class Note < ActiveRecord::Base
                "_Milestone changed to #{milestone.title}_"
              end
 
-      create({
+      create(
         noteable: noteable,
         project: project,
         author: author,
         note: body,
         system: true
-      }, without_protection: true)
+      )
     end
 
     def create_assignee_change_note(noteable, project, author, assignee)
@@ -116,7 +114,7 @@ class Note < ActiveRecord::Base
         author: author,
         note: body,
         system: true
-      }, without_protection: true)
+      })
     end
 
     def discussions_from_notes(notes)

app/models/project.rb

@@ -27,24 +27,20 @@
 class Project < ActiveRecord::Base
   include Gitlab::ShellAdapter
   include Gitlab::VisibilityLevel
+  include Gitlab::ConfigHelper
+  extend Gitlab::ConfigHelper
   extend Enumerize
 
   default_value_for :archived, false
-  default_value_for :issues_enabled, true
-  default_value_for :merge_requests_enabled, true
-  default_value_for :wiki_enabled, true
+  default_value_for :visibility_level, gitlab_config_features.visibility_level
+  default_value_for :issues_enabled, gitlab_config_features.issues
+  default_value_for :merge_requests_enabled, gitlab_config_features.merge_requests
+  default_value_for :wiki_enabled, gitlab_config_features.wiki
   default_value_for :wall_enabled, false
-  default_value_for :snippets_enabled, true
+  default_value_for :snippets_enabled, gitlab_config_features.snippets
 
   ActsAsTaggableOn.strict_case_match = true
 
-  attr_accessible :name, :path, :description, :issues_tracker, :label_list,
-    :issues_enabled, :merge_requests_enabled, :snippets_enabled, :issues_tracker_id,
-    :wiki_enabled, :visibility_level, :import_url, :last_activity_at,
-    :merge_requests_template, as: [:default, :admin]
-
-  attr_accessible :namespace_id, :creator_id, as: :admin
-
   acts_as_taggable_on :labels, :issues_default_labels
 
   attr_accessor :new_default_branch
@@ -101,13 +97,16 @@ class Project < ActiveRecord::Base
   validates :description, length: { maximum: 2000 }, allow_blank: true
   validates :name, presence: true, length: { within: 0..255 },
             format: { with: Gitlab::Regex.project_name_regex,
-                      message: "only letters, digits, spaces & '_' '-' '.' allowed. Letter or digit should be first" }
+                      message: Gitlab::Regex.project_regex_message }
   validates :path, presence: true, length: { within: 0..255 },
             exclusion: { in: Gitlab::Blacklist.path },
             format: { with: Gitlab::Regex.path_regex,
-                      message: "only letters, digits & '_' '-' '.' allowed. Letter or digit should be first" }
+                      message: Gitlab::Regex.path_regex_message }
   validates :issues_enabled, :merge_requests_enabled,
             :wiki_enabled, inclusion: { in: [true, false] }
+  validates :visibility_level,
+    exclusion: { in: gitlab_config.restricted_visibility_levels },
+    if: -> { gitlab_config.restricted_visibility_levels.any? }
   validates :issues_tracker_id, length: { maximum: 255 }, allow_blank: true
   validates :namespace, presence: true
   validates_uniqueness_of :name, scope: :namespace_id
@@ -251,7 +250,7 @@ class Project < ActiveRecord::Base
   end
 
   def check_limit
-    unless creator.can_create_project?
+    unless creator.can_create_project? or namespace.kind == 'group'
       errors[:limit_reached] << ("Your project limit is #{creator.projects_limit} projects! Please contact your administrator to increase it")
     end
   rescue
@@ -263,7 +262,7 @@ class Project < ActiveRecord::Base
   end
 
   def web_url
-    [Gitlab.config.gitlab.url, path_with_namespace].join("/")
+    [gitlab_config.url, path_with_namespace].join("/")
   end
 
   def web_url_without_protocol
@@ -403,7 +402,11 @@ class Project < ActiveRecord::Base
     services.each do |service|
 
       # Call service hook only if it is active
-      service.execute(data) if service.active
+      begin
+        service.execute(data) if service.active
+      rescue => e
+        logger.error(e)
+      end
     end
   end
 
@@ -488,7 +491,7 @@ class Project < ActiveRecord::Base
   end
 
   def http_url_to_repo
-    [Gitlab.config.gitlab.url, "/", path_with_namespace, ".git"].join('')
+    [gitlab_config.url, "/", path_with_namespace, ".git"].join('')
   end
 
   # Check if current branch name is marked as protected in the system

app/models/project_hook.rb

@@ -18,8 +18,6 @@
 class ProjectHook < WebHook
   belongs_to :project
 
-  attr_accessible :push_events, :issues_events, :merge_requests_events, :tag_push_events
-
   scope :push_hooks, -> { where(push_events: true) }
   scope :tag_push_hooks, -> { where(tag_push_events: true) }
   scope :issue_hooks, -> { where(issues_events: true) }

app/models/project_services/assembla_service.rb

@@ -18,8 +18,6 @@
 #
 
 class AssemblaService < Service
-  attr_accessible :subdomain
-
   include HTTParty
 
   validates :token, presence: true, if: :activated?

app/models/project_services/campfire_service.rb

@@ -18,8 +18,6 @@
 #
 
 class CampfireService < Service
-  attr_accessible :subdomain, :room
-
   validates :token, presence: true, if: :activated?
 
   def title

app/models/project_services/emails_on_push_service.rb

@@ -18,8 +18,6 @@
 #
 
 class EmailsOnPushService < Service
-  attr_accessible :recipients
-
   validates :recipients, presence: true, if: :activated?
 
   def title

app/models/project_services/gitlab_ci_service.rb

@@ -18,8 +18,6 @@
 #
 
 class GitlabCiService < CiService
-  attr_accessible :project_url
-
   validates :project_url, presence: true, if: :activated?
   validates :token, presence: true, if: :activated?
 

app/models/project_services/hipchat_service.rb

@@ -18,8 +18,6 @@
 #
 
 class HipchatService < Service
-  attr_accessible :room
-
   validates :token, presence: true, if: :activated?
 
   def title

app/models/project_services/slack_service.rb

@@ -18,9 +18,6 @@
 #
 
 class SlackService < Service
-  attr_accessible :room
-  attr_accessible :subdomain
-
   validates :room, presence: true, if: :activated?
   validates :subdomain, presence: true, if: :activated?
   validates :token, presence: true, if: :activated?

app/models/protected_branch.rb

@@ -12,8 +12,6 @@
 class ProtectedBranch < ActiveRecord::Base
   include Gitlab::ShellAdapter
 
-  attr_accessible :name
-
   belongs_to :project
   validates :name, presence: true
   validates :project, presence: true

app/models/repository.rb

@@ -242,4 +242,25 @@ class Repository
       branches
     end
   end
+
+  def contributors
+    log = graph_log.group_by { |i| i[:author_email] }
+
+    log.map do |email, contributions|
+      contributor = Gitlab::Contributor.new
+      contributor.email = email
+
+      contributions.each do |contribution|
+        if contributor.name.blank?
+          contributor.name = contribution[:author_name]
+        end
+
+        contributor.commits += 1
+        contributor.additions += contribution[:additions] || 0
+        contributor.deletions += contribution[:deletions] || 0
+      end
+
+      contributor
+    end
+  end
 end

app/models/service.rb

@@ -22,8 +22,6 @@
 class Service < ActiveRecord::Base
   default_value_for :active, false
 
-  attr_accessible :title, :token, :type, :active, :api_key
-
   belongs_to :project
   has_one :service_hook
 

app/models/snippet.rb

@@ -18,8 +18,6 @@
 class Snippet < ActiveRecord::Base
   include Linguist::BlobHelper
 
-  attr_accessible :title, :content, :file_name, :expires_at, :private
-
   default_value_for :private, true
 
   belongs_to :author, class_name: "User"

app/models/user.rb

@@ -50,31 +50,25 @@ require 'carrierwave/orm/activerecord'
 require 'file_size_validator'
 
 class User < ActiveRecord::Base
+  include Gitlab::ConfigHelper
+  extend Gitlab::ConfigHelper
+  include TokenAuthenticatable
+
   default_value_for :admin, false
-  default_value_for :can_create_group, true
+  default_value_for :can_create_group, gitlab_config.default_can_create_group
   default_value_for :can_create_team, false
   default_value_for :hide_no_ssh_key, false
+  default_value_for :projects_limit, gitlab_config.default_projects_limit
+  default_value_for :theme_id, gitlab_config.default_theme
 
-  devise :database_authenticatable, :token_authenticatable, :lockable, :async,
+  devise :database_authenticatable, :lockable, :async,
          :recoverable, :rememberable, :trackable, :validatable, :omniauthable, :confirmable, :registerable
 
-  attr_accessible :email, :password, :password_confirmation, :remember_me, :bio, :name, :username,
-                  :skype, :linkedin, :twitter, :website_url, :color_scheme_id, :theme_id, :force_random_password,
-                  :extern_uid, :provider, :password_expires_at, :avatar, :hide_no_ssh_key,
-                  as: [:default, :admin]
-
-  attr_accessible :projects_limit, :can_create_group,
-                  as: :admin
-
   attr_accessor :force_random_password
 
   # Virtual attribute for authenticating by either username or email
   attr_accessor :login
 
-  # Add login to attr_accessible
-  attr_accessible :login
-
-
   #
   # Relations
   #
@@ -120,7 +114,7 @@ class User < ActiveRecord::Base
   validates :username, presence: true, uniqueness: { case_sensitive: false },
             exclusion: { in: Gitlab::Blacklist.path },
             format: { with: Gitlab::Regex.username_regex,
-                      message: "only letters, digits & '_' '-' '.' allowed. Letter should be first" }
+                      message: Gitlab::Regex.username_regex_message }
 
   validates :notification_level, inclusion: { in: Notification.notification_levels }, presence: true
   validate :namespace_uniq, if: ->(user) { user.username_changed? }
@@ -223,20 +217,8 @@ class User < ActiveRecord::Base
       where('users.username = ? OR users.id = ?', name_or_id.to_s, name_or_id.to_i).first
     end
 
-    def build_user(attrs = {}, options= {})
-      if options[:as] == :admin
-        User.new(defaults.merge(attrs.symbolize_keys), options)
-      else
-        User.new(attrs, options).with_defaults
-      end
-    end
-
-    def defaults
-      {
-        projects_limit: Gitlab.config.gitlab.default_projects_limit,
-        can_create_group: Gitlab.config.gitlab.default_can_create_group,
-        theme_id: Gitlab.config.gitlab.default_theme
-      }
+    def build_user(attrs = {})
+      User.new(attrs)
     end
   end
 
@@ -315,7 +297,7 @@ class User < ActiveRecord::Base
   end
 
   def can_change_username?
-    Gitlab.config.gitlab.username_changing_enabled
+    gitlab_config.username_changing_enabled
   end
 
   def can_create_project?
@@ -490,7 +472,7 @@ class User < ActiveRecord::Base
 
   def avatar_url(size = nil)
     if avatar.present?
-      URI::join(Gitlab.config.gitlab.url, avatar.url).to_s
+      URI::join(gitlab_config.url, avatar.url).to_s
     else
       GravatarService.new.execute(email, size)
     end

app/models/users_group.rb

@@ -19,8 +19,6 @@ class UsersGroup < ActiveRecord::Base
     Gitlab::Access.options_with_owner
   end
 
-  attr_accessible :group_access, :user_id
-
   belongs_to :user
   belongs_to :group
 

app/models/users_project.rb

@@ -16,8 +16,6 @@ class UsersProject < ActiveRecord::Base
   include Notifiable
   include Gitlab::Access
 
-  attr_accessible :user, :user_id, :project_access
-
   belongs_to :user
   belongs_to :project
 
@@ -126,7 +124,7 @@ class UsersProject < ActiveRecord::Base
       author_id: self.user.id
     )
 
-    notification_service.new_team_member(self)
+    notification_service.new_team_member(self) unless owner?
     system_hook_service.execute_hooks_for(self, :create)
   end
 

app/models/web_hook.rb

@@ -22,8 +22,6 @@ class WebHook < ActiveRecord::Base
   default_value_for :issues_events, false
   default_value_for :merge_requests_events, false
 
-  attr_accessible :url
-
   # HTTParty timeout
   default_timeout 10
 

app/services/files/create_service.rb

@@ -25,7 +25,10 @@ module Files
       file_path = path
 
       unless file_name =~ Gitlab::Regex.path_regex
-        return error("Your changes could not be committed, because file name contains not allowed characters")
+        return error(
+          'Your changes could not be committed, because the file name ' +
+          Gitlab::Regex.path_regex_message
+        )
       end
 
       blob = repository.blob_at_branch(ref, file_path)

app/services/issues/reopen_service.rb

@@ -4,6 +4,7 @@ module Issues
       if issue.reopen
         event_service.reopen_issue(issue, current_user)
         create_note(issue)
+        notification_service.reopen_issue(issue, current_user)
         execute_hooks(issue, 'reopen')
       end
 

app/services/issues/update_service.rb

 module Issues
   class UpdateService < Issues::BaseService
     def execute(issue)
-      state = params.delete('state_event') || params.delete(:state_event)
+      state = params[:state_event]
 
       case state
       when 'reopen'
@@ -10,7 +10,7 @@ module Issues
         Issues::CloseService.new(project, current_user, {}).execute(issue)
       end
 
-      if params.present? && issue.update_attributes(params)
+      if params.present? && issue.update_attributes(params.except(:state_event))
         issue.reset_events_cache
 
         if issue.previous_changes.include?('milestone_id')

app/services/merge_requests/auto_merge_service.rb

@@ -6,7 +6,7 @@ module MergeRequests
   # Called when you do merge via GitLab UI
   class AutoMergeService < BaseMergeService
     def execute(merge_request, current_user, commit_message)
-      merge_request.lock
+      merge_request.lock_mr
 
       if Gitlab::Satellite::MergeAction.new(current_user, merge_request).merge!(commit_message)
         merge_request.merge
@@ -17,11 +17,11 @@ module MergeRequests
 
         true
       else
-        merge_request.unlock
+        merge_request.unlock_mr
         false
       end
     rescue
-      merge_request.unlock if merge_request.locked?
+      merge_request.unlock_mr if merge_request.locked?
       merge_request.mark_as_unmergeable
       false
     end

app/services/merge_requests/reopen_service.rb

@@ -3,6 +3,7 @@ module MergeRequests
     def execute(merge_request)
       if merge_request.reopen
         event_service.reopen_mr(merge_request, current_user)
+        notification_service.reopen_mr(merge_request, current_user)
         create_note(merge_request)
         execute_hooks(merge_request)
         merge_request.reload_code

app/services/merge_requests/update_service.rb

@@ -7,10 +7,10 @@ module MergeRequests
     def execute(merge_request)
       # We dont allow change of source/target projects
       # after merge request was created
-      params.delete(:source_project_id)
-      params.delete(:target_project_id)
+      params.except!(:source_project_id)
+      params.except!(:target_project_id)
 
-      state = params.delete('state_event') || params.delete(:state_event)
+      state = params[:state_event]
 
       case state
       when 'reopen'
@@ -19,7 +19,7 @@ module MergeRequests
         MergeRequests::CloseService.new(project, current_user, {}).execute(merge_request)
       end
 
-      if params.present? && merge_request.update_attributes(params)
+      if params.present? && merge_request.update_attributes(params.except(:state_event))
         merge_request.reset_events_cache
 
         if merge_request.previous_changes.include?('milestone_id')

app/services/milestones/group_service.rb

+module Milestones
+  class GroupService < Milestones::BaseService
+    def initialize(project_milestones)
+      @project_milestones = project_milestones.group_by(&:title)
+    end
+
+    def execute
+      build(@project_milestones)
+    end
+
+    def milestone(title)
+      if title
+        group_milestone = @project_milestones[title].group_by(&:title)
+        build(group_milestone).first
+      else
+        nil
+      end
+    end
+
+    private
+
+    def build(milestone)
+      milestone.map{ |title, milestones| GroupMilestone.new(title, milestones) }
+    end
+  end
+end

app/services/milestones/update_service.rb

 module Milestones
   class UpdateService < Milestones::BaseService
     def execute(milestone)
-      state = params.delete('state_event') || params.delete(:state_event)
+      state = params[:state_event]
 
       case state
       when 'activate'
@@ -11,7 +11,7 @@ module Milestones
       end
 
       if params.present?
-        milestone.update_attributes(params)
+        milestone.update_attributes(params.except(:state_event))
       end
 
       milestone

app/services/notification_service.rb

@@ -80,6 +80,10 @@ class NotificationService
     close_resource_email(merge_request, merge_request.target_project, current_user, 'closed_merge_request_email')
   end
 
+  def reopen_issue(issue, current_user)
+    reopen_resource_email(issue, issue.project, current_user, 'issue_status_changed_email', 'reopened')
+  end
+
   # When we merge a merge request we should send next emails:
   #
   #  * merge_request author if their notification level is not Disabled
@@ -89,12 +93,17 @@ class NotificationService
   def merge_mr(merge_request, current_user)
     recipients = reject_muted_users([merge_request.author, merge_request.assignee], merge_request.target_project)
     recipients = recipients.concat(project_watchers(merge_request.target_project)).uniq
+    recipients.delete(current_user)
 
     recipients.each do |recipient|
       mailer.merged_merge_request_email(recipient.id, merge_request.id, current_user.id)
     end
   end
 
+  def reopen_mr(merge_request, current_user)
+    reopen_resource_email(merge_request, merge_request.target_project, current_user, 'merge_request_status_email', 'reopened')
+  end
+
   # Notify new user with email after creation
   def new_user(user)
     # Don't email omniauth created users
@@ -301,7 +310,9 @@ class NotificationService
   end
 
   def reassign_resource_email(target, project, current_user, method)
-    recipients = User.where(id: [target.assignee_id, target.assignee_id_was])
+    assignee_id_was = previous_record(target, "assignee_id")
+
+    recipients = User.where(id: [target.assignee_id, assignee_id_was])
 
     # Add watchers to email list
     recipients = recipients.concat(project_watchers(project))
@@ -313,11 +324,29 @@ class NotificationService
     recipients.delete(current_user)
 
     recipients.each do |recipient|
-      mailer.send(method, recipient.id, target.id, target.assignee_id_was, current_user.id)
+      mailer.send(method, recipient.id, target.id, assignee_id_was, current_user.id)
+    end
+  end
+
+  def reopen_resource_email(target, project, current_user, method, status)
+    recipients = reject_muted_users([target.author, target.assignee], project)
+    recipients = recipients.concat(project_watchers(project)).uniq
+    recipients.delete(current_user)
+
+    recipients.each do |recipient|
+      mailer.send(method, recipient.id, target.id, status, current_user.id)
     end
   end
 
   def mailer
     Notify.delay
   end
+
+  def previous_record(object, attribute)
+    if object && attribute
+      if object.previous_changes.include?(attribute)
+        object.previous_changes[attribute].first
+      end
+    end
+  end
 end

app/services/projects/create_service.rb

@@ -5,27 +5,13 @@ module Projects
     end
 
     def execute
-      # get namespace id
-      namespace_id = params.delete(:namespace_id)
+      @project = Project.new(params)
 
-      # check that user is allowed to set specified visibility_level
+      # Reset visibility levet if is not allowed to set it
       unless Gitlab::VisibilityLevel.allowed_for?(current_user, params[:visibility_level])
-        params.delete(:visibility_level)
+        @project.visibility_level = default_features.visibility_level
       end
 
-      # Load default feature settings
-      default_features = Gitlab.config.gitlab.default_projects_features
-
-      default_opts = {
-        issues_enabled: default_features.issues,
-        wiki_enabled: default_features.wiki,
-        snippets_enabled: default_features.snippets,
-        merge_requests_enabled: default_features.merge_requests,
-        visibility_level: default_features.visibility_level
-      }.stringify_keys
-
-      @project = Project.new(default_opts.merge(params))
-
       # Parametrize path for project
       #
       # Ex.
@@ -33,13 +19,14 @@ module Projects
       #
       @project.path = @project.name.dup.parameterize unless @project.path.present?
 
+      # get namespace id
+      namespace_id = params[:namespace_id]
 
       if namespace_id
         # Find matching namespace and check if it allowed
         # for current user if namespace_id passed.
-        if allowed_namespace?(current_user, namespace_id)
-          @project.namespace_id = namespace_id
-        else
+        unless allowed_namespace?(current_user, namespace_id)
+          @project.namespace_id = nil
           deny_namespace
           return @project
         end

app/services/projects/transfer_service.rb

@@ -12,7 +12,7 @@ module Projects
     class TransferError < StandardError; end
 
     def execute
-      namespace_id = params.delete(:namespace_id)
+      namespace_id = params[:namespace_id]
       namespace = Namespace.find_by(id: namespace_id)
 
       if allowed_transfer?(current_user, project, namespace)

app/services/projects/update_service.rb

 module Projects
   class UpdateService < BaseService
-    def execute(role = :default)
-      params[:project].delete(:namespace_id)
+    def execute
       # check that user is allowed to set specified visibility_level
-      unless can?(current_user, :change_visibility_level, project) && Gitlab::VisibilityLevel.allowed_for?(current_user, params[:project][:visibility_level])
-        params[:project].delete(:visibility_level)
+      unless can?(current_user, :change_visibility_level, project) && Gitlab::VisibilityLevel.allowed_for?(current_user, params[:visibility_level])
+        params[:visibility_level] = project.visibility_level
       end
 
-      new_branch = params[:project].delete(:default_branch)
+      new_branch = params[:default_branch]
 
       if project.repository.exists? && new_branch && new_branch != project.default_branch
         project.change_head(new_branch)
       end
 
-      if project.update_attributes(params[:project], as: role)
-        if project.previous_changes.include?('namespace_id')
-          project.send_move_instructions
-        end
-
+      if project.update_attributes(params.except(:default_branch))
         if project.previous_changes.include?('path')
           project.rename_repo
         end

app/views/dashboard/issues.html.haml

 %h3.page-title
   Issues
-  %span.pull-right #{@issues.total_count} issues
 
 %p.light
   List all issues from all projects you have access to.

app/views/dashboard/merge_requests.html.haml

 %h3.page-title
   Merge Requests
-  %span.pull-right #{@merge_requests.total_count} merge requests
 
 
 %p.light

app/views/devise/mailer/confirmation_instructions.html.erb

@@ -6,4 +6,4 @@
   <p>You can confirm your account through the link below:</p>
 <% end %>
 
-<p><%= link_to 'Confirm my account', confirmation_url(@resource, confirmation_token: @resource.confirmation_token) %></p>
+<p><%= link_to 'Confirm my account', confirmation_url(@resource, confirmation_token: @token) %></p>