Problem: the test had not been updated after BUG#49978 was pushed
Fix: add 'set $rpl_only_running_threads= 1' to the end of the test
and update the result file.
Also, use include/assert.inc for an assertion (instead of relying
on result file comparison).
Also, move 'set @@global.slave_net_timeout' forwards, to get rid
of a warning.