Fixed the bug mdev-12558.

In the current code temporary tables we identified and opened before
other tables. CTE tables are identified in the same procedure as
regular tables. When a temporary table and a CTE table have the same
name T any reference to T that is in the scope of the CTE declaration
must be associated with this CTE. Yet it was not done properly.
When a reference to T was found in the scope of the declaration
of CTE T a pointer to this CTE was set in the reference. No check
that the reference had been already associated with a temporary table
was done. As a result, if the temporary table T  had been created then
the reference to T was considered simultaneously as reference to the CTE
named T and as a reference to the temporary table named T. This
confused the code that were executed later and caused a crash of
the server.
Now when a table reference is associated with a CTE any previous
association with a temporary table is dropped.

This problem could be easily avoided if the temporary tables were
not identified prematurely.
as reference to CTE named T and

mysql-test/r/cte_nonrecursive.result

@@ -962,7 +962,7 @@ View	Create View	character_set_client	collation_connection
 v1	CREATE ALGORITHM=UNDEFINED DEFINER=`root`@`localhost` SQL SECURITY DEFINER VIEW `v1` AS with alias1 as (select 1 AS `one`), alias2 as (select 2 AS `two`)select `alias1`.`one` AS `one`,`alias2`.`two` AS `two` from (`alias1` join `alias2`)	latin1	latin1_swedish_ci
 drop view v1;
 #
-# MDEV-12440: the same CTE table is used in twice
+# MDEV-12440: the same CTE table is used twice
 #
 create table t1 (a int, b  varchar(32));
 insert into t1 values
@@ -984,3 +984,19 @@ select * from cte3;
 a	b
 4	dd
 drop table t1;
+#
+# MDEV-12558: CTE with the same name as temporary table
+#
+CREATE TABLE t ENGINE=MyISAM AS SELECT 1 AS i;
+CREATE TEMPORARY TABLE cte ENGINE=MyISAM AS SELECT 2 AS f;
+WITH cte AS ( SELECT i FROM t ) SELECT * FROM cte;
+i
+1
+WITH cte AS ( SELECT i FROM t GROUP BY i) SELECT * FROM cte;
+i
+1
+SELECT * FROM cte;
+f
+2
+DROP TABLE cte;
+DROP TABLE t;

mysql-test/t/cte_nonrecursive.test

@@ -644,7 +644,7 @@ show create view v1;
 drop view v1;
 
 --echo #
---echo # MDEV-12440: the same CTE table is used in twice
+--echo # MDEV-12440: the same CTE table is used twice
 --echo #
 
 create table t1 (a int, b  varchar(32));
@@ -665,4 +665,19 @@ cte2 as (select * from cte1 where b > 'c'),
 cte3 as (select * from cte2 where a > 1 union select * from cte2 where a > 1)
 select * from cte3;
 
-drop table t1;
\ No newline at end of file
+drop table t1;
+
+--echo #
+--echo # MDEV-12558: CTE with the same name as temporary table
+--echo #
+
+CREATE TABLE t ENGINE=MyISAM AS SELECT 1 AS i;
+CREATE TEMPORARY TABLE cte ENGINE=MyISAM AS SELECT 2 AS f;
+
+WITH cte AS ( SELECT i FROM t ) SELECT * FROM cte;
+WITH cte AS ( SELECT i FROM t GROUP BY i) SELECT * FROM cte;
+
+SELECT * FROM cte;
+
+DROP TABLE cte;
+DROP TABLE t;

sql/sql_cte.cc

@@ -968,6 +968,17 @@ With_element *st_select_lex::find_table_def_in_with_clauses(TABLE_LIST *table)
 
 bool TABLE_LIST::set_as_with_table(THD *thd, With_element *with_elem)
 {
+  if (table)
+  {
+    /*
+      This table was prematurely identified as a temporary table.
+      We correct it here, but it's not a nice solution in the case
+      when the temporary table with this name is not used anywhere
+      else in the query.
+    */
+    thd->mark_tmp_table_as_free_for_reuse(table);
+    table= 0;
+  }
   with= with_elem;
   if (!with_elem->is_referenced() || with_elem->is_recursive)
     derived= with_elem->spec;