Due to restricted size of the threadpool, execution of client queries can
be delayed (queued) for a while. This delay was interpreted as client
inactivity, and connection is closed, if client idle time + queue time
exceeds wait_timeout.

But users did not expect queue time to be included into wait_timeout.

This patch changes the behavior. We don't close connection anymore,
if there is some unread data present on connection,
even if wait_timeout is exceeded. Unread data means that client
was not idle, it sent a query, which we did not have time to process yet.

MDEV-16023 Unfortunate error message WARN_VERS_PART_FULL (partition <name> is full) when rotation time for the last interval passed

* remove one case of WARN_VERS_PART_FULL

The fix of MDEV-13654 (commit ff81faf6)
wrongly caused ADD PRIMARY KEY to ignore duplicate PRIMARY KEY values
caused by concurrent DML transactions that had been started before the
ALTER TABLE operation (but did not access the table before the ALTER TABLE
started).

row_ins_duplicate_online(): Always report a duplicate key error
if DB_TRX_ID had been reset (it belongs to a transaction that had
started before the ALTER TABLE operation).

MDEV-22134: handle_fatal_signal (sig=11) in __strlen_avx2 on START SLAVE | Assertion `global_system_variables.session_track_system_variables' failed in Session_sysvars_tracker::init | *** buffer overflow detected *** (on optimized builds)

Prohibit assigning NULL as for other system variables.

Problem:
========
During point in time recovery of binary log syntax error is reported for
BEGIN statement and recovery fails.

Analysis:
=========
In MariaDB 10.3 and later, setting the sql_mode system variable to Oracle
allows the server to understand a subset of Oracle's PL/SQL language. When
sql_mode=ORACLE is set, it switches the parser from the MariaDB parser to
Oracle compatible parser. With this change 'BEGIN' is not considered as
'START TRANSACTION'. Hence the syntax error is reported.

Fix:
===
At preset 'BEGIN' query is generated from 'Gtid_log_event::print'. The current
session specific 'sql_mode' information is not present as part of
'Gtid_log_event'. If it was available then, mysqlbinlog tool can make use of
'sql_mode == ORACLE' and can output "START TRANSACTION" in this particular
mode and for other sql_modes it will write "BEGIN" as part of output. Since it
is not available 'mysqlbinlog' tool will output all 'BEGIN' statements as
'START TRANSACTION' irrespective of 'sql_mode'.

trx_update_mod_tables_timestamp(): When implementing
innodb_evict_tables_on_commit_debug, do not evict tables
on which transactional locks exist.

This debug variable was broken since its introduction in
commit 947b0b57.

Problem was that the code didn't handle a transaction created in innodb
as part of a failed mysql_lock_tables()

Fix stale virtual field value in 4 cases: when virtual field depends
on row_start/row_end in timestamp/trx_id versioned table. row_start
dep is recalculated in vers_update_fields() (SQL and InnoDB
layer). row_end dep is recalculated on history row insert.

MDEV-22061 InnoDB: Assertion of missing row in sec index row_start upon REPLACE on a system-versioned table

make_versioned_helper() appended new update field unconditionally
while it should check if this field already exists in update vector.

Misc renames to conform versioning prefix. vers_update_fields() name
conforms with sql layer TABLE::vers_update_fields().

When InnoDB is extending a data file, it is updating the FSP_SIZE
field in the first page of the data file.

In commit 8451e090 (MDEV-11556)
we removed a work-around for this bug and made recovery stricter,
by making it track changes to FSP_SIZE via redo log records, and
extend the data files before any changes are being applied to them.

It turns out that the function fsp_fill_free_list() is not crash-safe
with respect to this when it is initializing the change buffer bitmap
page (page 1, or generally, N*innodb_page_size+1). It uses a separate
mini-transaction that is committed (and will be written to the redo
log file) before the mini-transaction that actually extended the data
file. Hence, recovery can observe a reference to a page that is
beyond the current end of the data file.

fsp_fill_free_list(): Initialize the change buffer bitmap page in
the same mini-transaction.

The rest of the changes are fixing a bug that the use of the separate
mini-transaction was attempting to work around. Namely, we must ensure
that no other thread will access the change buffer bitmap page before
our mini-transaction has been committed and all page latches have been
released.

That is, for read-ahead as well as neighbour flushing, we must avoid
accessing pages that might not yet be durably part of the tablespace.

fil_space_t::committed_size: The size of the tablespace
as persisted by mtr_commit().

fil_space_t::max_page_number_for_io(): Limit the highest page
number for I/O batches to committed_size.

MTR_MEMO_SPACE_X_LOCK: Replaces MTR_MEMO_X_LOCK for fil_space_t::latch.

mtr_x_space_lock(): Replaces mtr_x_lock() for fil_space_t::latch.

mtr_memo_slot_release_func(): When releasing MTR_MEMO_SPACE_X_LOCK,
copy space->size to space->committed_size. In this way, read-ahead
or flushing will never be invoked on pages that do not yet exist
according to FSP_SIZE.

m_file[0] not always is a good sample.

Server auto-sets lower_case_file_system value based on default
datadir's behavior instead of instead of using the directory specified
by the user through the configuration file or command line options.

This patch fixes this problem.

Server auto-sets lower_case_file_system value based on default
datadir's behavior instead of instead of using the directory specified
by the user through the configuration file or command line options.

This patch fixes this problem.

In commit 0f90728b (MDEV-16809)
we introduced the configuration option innodb_log_optimize_ddl
for controlling whether native index creation or table-rebuild
in InnoDB should avoid writing full redo log.

Fungo Wang reported that this option is causing occasional failures.
The reason is that pages may be written to data files in an
inconsistent state. Applying log records to such inconsistent pages
may fail.

The solution is to always invoke PageBulk::finish() before page latches
may be released, to ensure that the page contents is in a consistent
state.

Something similar was implemented in MySQL 8.0.13:
mysql/mysql-server@d1254b947354e0f5b7223b09c521bd85f22e1e31

buf_block_t::skip_flush_check: Remove. Suppressing consistency checks
is a bad idea.

PageBulk::needs_finish(): New predicate: Determine whether
PageBulk::finish() must fix up the page.

PageBulk::init(): Clear PAGE_DIRECTION to ensure that needs_finish()
will hold. We change the field from PAGE_NO_DIRECTION to 0
and back without writing redo log. This trick avoids the need
to introduce any new data member to PageBulk.

PageBulk::insert(): Replace some high-level accessors to bypass
debug assertions related to PAGE_HEAP_TOP that we will be violating
until finish() has been executed.

PageBulk::finish(): Tolerate m_rec_no==0. We must invoke this also
on an empty page, to ensure that PAGE_HEAP_TOP is initialized.

PageBulk::commit(): Always invoke finish().

PageBulk::release(), BtrBulk::pageSplit(), BtrBulk::storeExt(),
BtrBulk::finish(): Invoke PageBulk::finish().

page_simple_validate_old(), page_simple_validate_new():
Require PAGE_N_DIR_SLOTS to be at least 2.

MDEV-22721 (commit eba2d10a)
inadvertently introduced an infinite loop.

page_validate(): Remove the infinite loop.

-Wl,-z,relro,-z,now are linker flags and should
be checked as such.

TODO: perform module, exe shared checks separately
rather than a pure linker check.

An oveflow was happening on windows because on Windows sizeof(ulong) is 4 bytes
while it is 8 bytes on Linux.
Switched avg_frequency and avg length for column statistics to ulonglong.
Switched avg_frequency for index statistics to ulonglong.

The only InnoDB change between MySQL 5.7.30 and MySQL 5.7.31
that is applicable to MariaDB Server was applied in
commit 8d061996 (MDEV-23161).

The only InnoDB changes between Percona XtraDB Server 5.6.47-87.0
and 5.6.48-88.0 are related to InnoDB changes between MySQL 5.6.47
and MySQL 5.6.48, which we had already applied.

There were no InnoDB changes between MySQL 5.6.48 and MySQL 5.6.49.

This issue was originally reported by Fungo Wang, along with a fix, as
MySQL Bug #98990.

His suggested fix was applied as part of
mysql/mysql-server@a003fc373d1adb3ccea353b5d7d83f6c4c552383
and released in MySQL 5.7.31.

i_s_metrics_fill(): Add the missing call to Field::set_notnull(),
and simplify some code.

- i_s_fts_index_cache_fill() should take shared lock of fts cache
before accessing index cache to avoid reading stale data.

- Problem is that test case creates iblogfile* files. So existing
ibdata pages could point to future LSN. Fix is that taking the
backup of data before iblogfile* creation and apply it before
exiting the test case.

MDEV-22890 DEADLOCK of threads detected: row0sel.cc S-LOCK / btr0cur.cc S-LOCK / row0quiesce.cc X-LOCK

Problem:
=======
- Read operations are always allowed to hold a secondary index leaf
latch and then look up the corresponding clustered index record.
Flush table operation acquires secondary index latch while holding
a clustered index latch. It leads to deadlock violation.

Fix:
====
- Flush table operation should acquire secondary index before taking
clustered index to avoid deadlock violation with select operation.

Only install wsrep scripts and links if WSREP_ON is actually set