Use size_t everywhere and remove suspicious expression.

Fixed by the author in other way (char -> short)

This reverts commit 496f7090.

Test code modifications and new failures from buildbot only
registered for the main suite. The rest was updated partially,
based on the status of existing JIRA items

Skipping the package within debian/rules won't work because starting
with Debian 10, the helper scripts read the control file before the
recipe.

bson.cpp:1775:3: error: case label value is less than minimum value for type [-Werror]
   case TYPE_NULL:
bson.cpp:1776:7: error: statement will never be executed [-Werror=switch-unreachable]
     b = true;

check that we can do type casting

Apply the patch based on the patch by Varun Gupta:

PARAM::is_ror_scan might be used unitialized when check_quick_select()
is invoked for a "degenerate" SEL_ARG tree (e.g. one having type
SEL_ARG::IMPOSSIBLE).

Make check_quick_select() always initialize PARAM::is_ror_scan.

Problem is that not all plugins are loaded when wsrep_recover is executed.
Thus, we allow unknown system variables and extra system variables during
wsrep_recover. Any unknown system variables would still be caught when
the server starts up normally after the SST.

This was because OpenBSD (and others) can be missing HAVE_BACKTRACE / HAVE_BACKTRACE_FD
which is the condition for my_safe_print_str to be defined.

Fixes:
/prj/tmp/work/cortexa57-poky-linux-musl/mariadb/10.5.8-r0/recipe-sysroot-native/usr/bin/aarch64-poky-linux-musl/../../libexec/aarch64-poky-linux-musl/gcc/aarch64-poky-linux-musl/10.2.0/ld.bfd: /usr/src/debug/mariadb/10.5.8-r0/mariadb-10.5.8/unittest/mysys/stacktrace-t.c:36: undefined reference to `my_safe_print_str'
Signed-off-by: Mingli Yu <mingli.yu@windriver.com>

  modified:   storage/connect/bson.cpp
  modified:   storage/connect/bson.h
  modified:   storage/connect/bsonudf.cpp
  modified:   storage/connect/bsonudf.h
  modified:   storage/connect/ha_connect.cc
  modified:   storage/connect/jsonudf.cpp
  modified:   storage/connect/mysql-test/connect/r/bson.result
  modified:   storage/connect/mysql-test/connect/r/bson_udf.result
  modified:   storage/connect/mysql-test/connect/t/bson_udf.inc
  modified:   storage/connect/mysql-test/connect/t/bson_udf.test
  modified:   storage/connect/mysql-test/connect/t/bson_udf2.inc
  modified:   storage/connect/tabbson.cpp
  modified:   storage/connect/tabbson.h

Analysis:
=========

Reason for test failure was a mutex deadlock between DeadlockChecker with stack

Thread 6 (Thread 0xffff70066070 (LWP 24667)):
0  0x0000ffff784e850c in __lll_lock_wait (futex=futex@entry=0xffff04002258, private=0) at lowlevellock.c:46
1  0x0000ffff784e19f0 in __GI___pthread_mutex_lock (mutex=mutex@entry=0xffff04002258) at pthread_mutex_lock.c:135
2  0x0000aaaaac8cd014 in inline_mysql_mutex_lock (src_file=0xaaaaacea0f28 "/home/buildbot/buildbot/build/mariadb-10.2.37/sql/wsrep_thd.cc", src_line=762, that=0xffff04002258) at /home/buildbot/buildbot/build/mariadb-10.2.37/include/mysql/psi/mysql_thread.h:675
3  wsrep_thd_is_BF (thd=0xffff040009a8, sync=sync@entry=1 '\001') at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/wsrep_thd.cc:762
4  0x0000aaaaacadce68 in lock_rec_has_to_wait (for_locking=false, lock_is_on_supremum=<optimized out>, lock2=0xffff628952d0, type_mode=291, trx=0xffff62894070) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:826
5  lock_has_to_wait (lock1=<optimized out>, lock2=0xffff628952d0) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:873
6  0x0000aaaaacadd0b0 in DeadlockChecker::search (this=this@entry=0xffff70061fe8) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:7142
7  0x0000aaaaacae2dd8 in DeadlockChecker::check_and_resolve (lock=lock@entry=0xffff62894120, trx=trx@entry=0xffff62894070) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:7286
8  0x0000aaaaacae3070 in lock_rec_enqueue_waiting (c_lock=0xffff628952d0, type_mode=type_mode@entry=3, block=block@entry=0xffff62076c40, heap_no=heap_no@entry=2, index=index@entry=0xffff4c076f28, thr=thr@entry=0xffff4c078810, prdt=prdt@entry=0x0) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:1796
9  0x0000aaaaacae3900 in lock_rec_lock_slow (thr=0xffff4c078810, index=0xffff4c076f28, heap_no=2, block=0xffff62076c40, mode=3, impl=0) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:2106
10 lock_rec_lock (impl=false, mode=3, block=0xffff62076c40, heap_no=2, index=0xffff4c076f28, thr=0xffff4c078810) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:2168
11 0x0000aaaaacae3ee8 in lock_sec_rec_read_check_and_lock (flags=flags@entry=0, block=block@entry=0xffff62076c40, rec=rec@entry=0xffff6240407f "\303\221\342\200\232\303\220\302\265\303\220\302\272\303\221\302\201\303\221\342\200\232", index=index@entry=0xffff4c076f28, offsets=0xffff4c080690, offsets@entry=0xffff70062a30, mode=LOCK_X, mode@entry=1653162096, gap_mode=0, gap_mode@entry=281470749427104, thr=thr@entry=0xffff4c078810) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/lock/lock0lock.cc:6082
12 0x0000aaaaacb684c4 in sel_set_rec_lock (pcur=0xaaaac841c270, pcur@entry=0xffff4c077d58, rec=0xffff6240407f "\303\221\342\200\232\303\220\302\265\303\220\302\272\303\221\302\201\303\221\342\200\232", rec@entry=0x28 <error: Cannot access memory at address 0x28>, index=index@entry=0xffff4c076f28, offsets=0xffff70062a30, mode=281472334905456, type=281470749427104, thr=0xffff4c078810, thr@entry=0x9f, mtr=0x0, mtr@entry=0xffff70063928) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/row/row0sel.cc:1270
13 0x0000aaaaacb6bb64 in row_search_mvcc (buf=buf@entry=0xffff4c080690 "\376\026", mode=mode@entry=PAGE_CUR_GE, prebuilt=0xffff4c077b98, match_mode=match_mode@entry=1, direction=direction@entry=0) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/row/row0sel.cc:5181
14 0x0000aaaaacaae568 in ha_innobase::index_read (this=0xffff4c038a80, buf=0xffff4c080690 "\376\026", key_ptr=<optimized out>, key_len=768, find_flag=<optimized out>) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/handler/ha_innodb.cc:9393
15 0x0000aaaaac9201cc in handler::ha_index_read_map (this=0xffff4c038a80, buf=0xffff4c080690 "\376\026", key=0xffff4c07ccf8 "", keypart_map=keypart_map@entry=18446744073709551615, find_flag=find_flag@entry=HA_READ_KEY_EXACT) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/handler.cc:2718
16 0x0000aaaaac9f36b0 in Rows_log_event::find_row (this=this@entry=0xffff4c030098, rgi=rgi@entry=0xffff4c01b510) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/log_event.cc:13461
17 0x0000aaaaac9f3e44 in Update_rows_log_event::do_exec_row (this=0xffff4c030098, rgi=0xffff4c01b510) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/log_event.cc:13936
18 0x0000aaaaac9e7ee8 in Rows_log_event::do_apply_event (this=0xffff4c030098, rgi=0xffff4c01b510) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/log_event.cc:11101
19 0x0000aaaaac8ca4e8 in Log_event::apply_event (rgi=0xffff4c01b510, this=0xffff4c030098) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/log_event.h:1454
20 wsrep_apply_events (buf_len=0, events_buf=0x1, thd=0xffff4c0009a8) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/wsrep_applier.cc:164
21 wsrep_apply_cb (ctx=0xffff4c0009a8, buf=0x1, buf_len=18446743528248705000, flags=<optimized out>, meta=<optimized out>) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/wsrep_applier.cc:267
22 0x0000ffff7322d29c in galera::TrxHandle::apply (this=this@entry=0xffff4c027960, recv_ctx=recv_ctx@entry=0xffff4c0009a8, apply_cb=apply_cb@entry=0xaaaaac8c9fe8 <wsrep_apply_cb(void*, void const*, size_t, uint32_t, wsrep_trx_meta_t const*)>, meta=...) at /home/buildbot/buildbot/build/galera/src/trx_handle.cpp:317
23 0x0000ffff73239664 in apply_trx_ws (recv_ctx=recv_ctx@entry=0xffff4c0009a8, apply_cb=0xaaaaac8c9fe8 <wsrep_apply_cb(void*, void const*, size_t, uint32_t, wsrep_trx_meta_t const*)>, commit_cb=0xaaaaac8ca8d0 <wsrep_commit_cb(void*, uint32_t, wsrep_trx_meta_t const*, wsrep_bool_t*, bool)>, trx=..., meta=...) at /home/buildbot/buildbot/build/galera/src/replicator_smm.cpp:34
24 0x0000ffff7323c0c4 in galera::ReplicatorSMM::apply_trx (this=this@entry=0xaaaac7c7ebc0, recv_ctx=recv_ctx@entry=0xffff4c0009a8, trx=trx@entry=0xffff4c027960) at /home/buildbot/buildbot/build/galera/src/replicator_smm.cpp:454
25 0x0000ffff7323e8b8 in galera::ReplicatorSMM::process_trx (this=0xaaaac7c7ebc0, recv_ctx=0xffff4c0009a8, trx=0xffff4c027960) at /home/buildbot/buildbot/build/galera/src/replicator_smm.cpp:1258
26 0x0000ffff73268f68 in galera::GcsActionSource::dispatch (this=this@entry=0xaaaac7c7f348, recv_ctx=recv_ctx@entry=0xffff4c0009a8, act=..., exit_loop=@0xffff7006535f: false) at /home/buildbot/buildbot/build/galera/src/gcs_action_source.cpp:115
27 0x0000ffff73269dd0 in galera::GcsActionSource::process (this=0xaaaac7c7f348, recv_ctx=0xffff4c0009a8, exit_loop=@0xffff7006535f: false) at /home/buildbot/buildbot/build/galera/src/gcs_action_source.cpp:180
28 0x0000ffff7323ef5c in galera::ReplicatorSMM::async_recv (this=0xaaaac7c7ebc0, recv_ctx=0xffff4c0009a8) at /home/buildbot/buildbot/build/galera/src/replicator_smm.cpp:362
29 0x0000ffff73217760 in galera_recv (gh=<optimized out>, recv_ctx=<optimized out>) at /home/buildbot/buildbot/build/galera/src/wsrep_provider.cpp:244
30 0x0000aaaaac8cb344 in wsrep_replication_process (thd=0xffff4c0009a8) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/wsrep_thd.cc:486
31 0x0000aaaaac8bc3a0 in start_wsrep_THD (arg=arg@entry=0xaaaac7cb3e38) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/wsrep_mysqld.cc:2173
32 0x0000aaaaaca89198 in pfs_spawn_thread (arg=<optimized out>) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/perfschema/pfs.cc:1869
33 0x0000ffff784defc4 in start_thread (arg=0xaaaaaca890d8 <pfs_spawn_thread(void*)>) at pthread_create.c:335
34 0x0000ffff7821c3f0 in thread_start () at ../sysdeps/unix/sysv/linux/aarch64/clone.S:89

and background victim transaction kill with stack

Thread 28 (Thread 0xffff485fa070 (LWP 24870)):
0  0x0000ffff784e530c in __pthread_cond_wait (cond=cond@entry=0xaaaac83e98e0, mutex=mutex@entry=0xaaaac83e98b0) at pthread_cond_wait.c:186
1  0x0000aaaaacb10788 in os_event::wait (this=0xaaaac83e98a0) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/os/os0event.cc:158
2  os_event::wait_low (reset_sig_count=2, this=0xaaaac83e98a0) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/os/os0event.cc:325
3  os_event_wait_low (event=0xaaaac83e98a0, reset_sig_count=<optimized out>) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/os/os0event.cc:507
4  0x0000aaaaacb98480 in sync_array_wait_event (arr=arr@entry=0xaaaac7dbb450, cell=@0xffff485f96e8: 0xaaaac7dbb560) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/sync/sync0arr.cc:471
5  0x0000aaaaacab53c8 in TTASEventMutex<GenericPolicy>::enter (line=19524, filename=0xaaaaacf2ce40 "/home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/handler/ha_innodb.cc", max_delay=<optimized out>, max_spins=0, this=0xaaaac83cc8c0) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/include/ib0mutex.h:516
6  PolicyMutex<TTASEventMutex<GenericPolicy> >::enter (this=0xaaaac83cc8c0, n_spins=<optimized out>, n_delay=<optimized out>, name=0xaaaaacf2ce40 "/home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/handler/ha_innodb.cc", line=19524) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/include/ib0mutex.h:637
7  0x0000aaaaacaaa52c in bg_wsrep_kill_trx (void_arg=0xffff4c057430) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/innobase/handler/ha_innodb.cc:19524
8  0x0000aaaaac79e7f0 in handle_manager (arg=arg@entry=0x0) at /home/buildbot/buildbot/build/mariadb-10.2.37/sql/sql_manager.cc:112
9  0x0000aaaaaca89198 in pfs_spawn_thread (arg=<optimized out>) at /home/buildbot/buildbot/build/mariadb-10.2.37/storage/perfschema/pfs.cc:1869
10 0x0000ffff784defc4 in start_thread (arg=0xaaaaaca890d8 <pfs_spawn_thread(void*)>) at pthread_create.c:335
11 0x0000ffff7821c3f0 in thread_start () at ../sysdeps/unix/sysv/linux/aarch64/clone.S:89

Fix:
====

Do not use THD::LOCK_thd_data mutex if we already hold lock_sys->mutex because it
will cause mutexing order violation. Victim transaction holding conflicting
locks can't be committed or rolled back while we hold lock_sys->mutex. Thus,
it is safe to do wsrep_thd_is_BF call with no additional mutexes.

statistics calculation

 Analysis: When --replace or --insert-ignore is not given, dumping of
mysql.innodb_index_stats and mysql.innodb_table_stats will result into race
condition.
Fix: Check if these options are present with --system=stats (because dumping
under --system=stats is safe). Otherwise, dump only structure, ignoring data
because innodb will recalculate data anyway.

recv_recovery_from_checkpoint_start(): Clear the recv_no_ibuf_operations
flag at the same time when we enabled writes to the log.

The failure to clear the flag might have caused some missed
change buffer merges, at least to the secondary index of SYS_TABLES
that were accessed by trx_resurrect_table_locks() while the last
recovery batch was in progress.

Thanks to Thirunarayanan Balathandayuthapani for suggesting this fix.

fil_rename_tablespace(): Do not write a redundant MLOG_FILE_RENAME2
record.

The recovery bug will be fixed later. The problem is that we are
invoking fil_op_replay_rename() too often, while we should skip
any 'intermediate' names of a tablespace and only apply the
very last rename for each tablespace identifier, and only if
the tablespace name is not already correct.

It seems that memory is not freed when updated value is NULL or
when wsrep is not initialized before shutdown.

Update mysqldump man page for --system={stats,timezones}

statistics calculation

mysqldump --system=stats and --system=timezones by default used
ordinary INSERT statements populate EITS, innodb stats, and timezone tables.

As these all have primary keys it could result in conflict.

The behavior desired with --system= is to replace the tables.
As such we assume --replace for the purposes of stats and timezone tables
there if --insert-ignore isn't specified.

mutex order violation here.
when wsrep bf thread kills a conflicting trx, the stack is

  wsrep_thd_LOCK()
  wsrep_kill_victim()
  lock_rec_other_has_conflicting()
  lock_clust_rec_read_check_and_lock()
  row_search_mvcc()
  ha_innobase::index_read()
  ha_innobase::rnd_pos()
  handler::ha_rnd_pos()
  handler::rnd_pos_by_record()
  handler::ha_rnd_pos_by_record()
  Rows_log_event::find_row()
  Update_rows_log_event::do_exec_row()
  Rows_log_event::do_apply_event()
  Log_event::apply_event()
  wsrep_apply_events()

and mutexes are taken in the order

  lock_sys->mutex -> victim_trx->mutex -> victim_thread->LOCK_thd_data

When a normal KILL statement is executed, the stack is

  innobase_kill_query()
  kill_handlerton()
  plugin_foreach_with_mask()
  ha_kill_query()
  THD::awake()
  kill_one_thread()

and mutexes are

  victim_thread->LOCK_thd_data -> lock_sys->mutex -> victim_trx->mutex

To fix the mutex order violation we kill the victim thd asynchronously,
from the manager thread

and void wsrep_innobase_kill_one_trx()

as their return values are never used.
Also remove redundant cast and checks that are always true

* provide an argument to the callback
* don't ignore a callback request if it's already present in the queue
* initialize mutex/cond/in_use flag before starting the thread,
  in case the first callback queueing request arrives before
  handle_manager had time to initialize
* set/check abort_manager under a mutex, otherwise handle_manager
  thread might destroy LOCK_manager before stop_handle_manager
  released it
* signal COND on queueing a callback, stop cond_wait on callback request
* always start the thread, even if flush_time is 0
* but keep the old behavior in embedded (no replication, no galera)
* style cleanups (e.g. remove volatile for a variable protected by a mutex)

MDEV-23201 correctly reordered columns in mysql.user table when upgrading
from MySQL-5.7

Here we also correctly reorder columns in mysql.user table from an invalid order
caused by an upgrade from MySQL-5.7 to MariaDB-before-MDEV-23201.

Update
* galera/disabled.def
* galera_3_nodes/disabled.def

Clarified working contributed by Vicentiu