Commit 3898b33d authored by Léo-Paul Géneau's avatar Léo-Paul Géneau 👾

Fix jupyter

See merge request !1314
parents ff5b29c0 6506625f
Pipeline #25729 failed with stage
in 0 seconds
[buildout]
extends =
extends =
buildout.hash.cfg
../../stack/slapos.cfg
../openssl/buildout.cfg
......@@ -62,48 +62,26 @@ context =
[versions]
Pygments = 2.2.0
astor = 0.5
backports-abc = 0.5
backports.shutil-get-terminal-size = 1.0.0
ipykernel = 4.5.2
ipython = 5.3.0
ipython-genutils = 0.1.0
ipywidgets = 6.0.0
jupyter-client = 5.0.0
jupyter-core = 4.3.0
jupyterlab = 0.26.3
jupyterlab-launcher = 0.3.1
matplotlib = 2.1.2
mistune = 0.7.3
nbformat = 4.3.0
notebook = 4.4.1
prompt-toolkit = 1.0.13
ptyprocess = 0.5.1
pyzmq = 16.0.2
scikit-learn = 0.18.1
seaborn = 0.7.1
simplegeneric = 0.8.1
statsmodels = 0.8.0
terminado = 0.6
tornado = 4.4.2
widgetsnbextension = 2.0.0
traitlets = 4.3.3
# nbconvert 4.2.0 depends on entrypoints egg that is not available as tar/zip source.
nbconvert = 4.1.0
pathlib2 = 2.2.1
patsy = 0.4.1
pexpect = 4.2.1
pickleshare = 0.7.4
scandir = 1.5
singledispatch = 3.4.0.3
wcwidth = 0.1.7
jupyter = 1.0.0
jupyter-console = 5.1.0
qtconsole = 4.3.0
et-xmlfile = 1.0.1
h5py = 2.7.1
mpmath = 1.0.0
openpyxl = 2.5.2
sympy = 1.1.1
xlrd = 1.1.0
jdcal = 1.4
......@@ -63,24 +63,24 @@ setup-eggs =
${numpy:egg}
${python-pyzmq:egg}
${ipython:egg}
scripts =
scripts =
jupyter-kernelspec
pythonjupyter
jupyter
jupyter-trust
jupyter-nbconvert
jupyter-console
jupyter-migrate
jupyter-troubleshoot
jupyter-run
[jupyter-notebook-initialized-scripts]
recipe = zc.recipe.egg:scripts
eggs = ${jupyter:eggs}
environment = jupyter-env
scripts =
scripts =
jupyter-nbconvert
jupyter-nbextension
jupyter-notebook
jupyter-serverextension
......
......@@ -7,7 +7,7 @@ extends =
../../stack/monitor/buildout.cfg
../../stack/slapos.cfg
parts =
parts =
beremiz-source
slapos-cookbook
instance-profile
......@@ -95,7 +95,6 @@ Automat = 0.3.0
zope.interface = 4.4.2
Nevow = 0.14.5
PyHamcrest = 2.0.2
Pygments = 2.9.0
Pyro = 3.16
bitarray = 2.1.3
constantly = 15.1.0
......@@ -103,7 +102,6 @@ future = 0.18.2
hyperlink = 21.0.0
incremental = 21.3.0
pathlib = 1.0.1
prompt-toolkit = 3.0.19
zeroconf-py2compat = 0.19.10
# Required by:
......
......@@ -43,64 +43,3 @@ output = ${buildout:directory}/template.cfg
[instance-jupyter]
<= download-file-base
[versions]
Pygments = 2.7.2
astor = 0.5
async-generator = 1.10
backports-abc = 0.5
backports.shutil-get-terminal-size = 1.0.0
bleach = 3.2.1
defusedxml = 0.6.0
entrypoints = 0.3
ipykernel = 5.3.4:whl
ipython = 5.3.0
ipython-genutils = 0.1.0
ipywidgets = 6.0.0
jupyter-client = 6.1.7
jupyter-core = 4.7.0
jupyterlab = 0.26.3
jupyterlab-launcher = 0.3.1
jupyterlab-pygments = 0.1.2
matplotlib = 2.1.2
mistune = 0.8.4
nest-asyncio = 1.4.3
nbclient = 0.5.1
nbformat = 5.0.8
notebook = 6.1.5
pandocfilters = 1.4.3
prompt-toolkit = 1.0.13
ptyprocess = 0.5.1
pyzmq = 20.0.0
scikit-learn = 0.20.4
seaborn = 0.7.1
simplegeneric = 0.8.1
statsmodels = 0.11.1
testpath = 0.4.4
terminado = 0.9.1
tornado = 6.1
traitlets = 5.0.5
webencodings = 0.5.1
widgetsnbextension = 2.0.0
Send2Trash = 1.5.0
argon2-cffi = 20.1.0
nbconvert = 6.0.7
pathlib2 = 2.2.1
patsy = 0.5.1
pexpect = 4.8.0
pickleshare = 0.7.4
prometheus-client = 0.9.0
scandir = 1.5
pytz = 2020.4
singledispatch = 3.4.0.3
wcwidth = 0.1.7
jupyter = 1.0.0
jupyter-console = 5.1.0
qtconsole = 4.3.0
et-xmlfile = 1.0.1
h5py = 2.7.1
mpmath = 1.0.0
openpyxl = 2.5.2
sympy = 1.1.1
xlrd = 1.1.0
jdcal = 1.4
......@@ -31,6 +31,7 @@ import json
import os
import requests
import sqlite3
import subprocess
from slapos.proxy.db_version import DB_VERSION
from slapos.testing.testcase import makeModuleSetUpAndTestCaseClass
......@@ -268,3 +269,67 @@ class TestJupyterCustomAdditional(SelectMixin, InstanceTestCase):
# clean up the fake master
r.destroyed()
class TestIPython(InstanceTestCase):
converted_notebook = 'test.nbconvert.ipynb'
notebook_filename = 'test.ipynb'
test_sentence = 'test'
def setUp(self):
super().setUp()
notebook_source = {
"cells": [
{
"cell_type": "code",
"execution_count": None,
"metadata": {},
"outputs": [],
"source": [
"import sys\n",
"print('" + self.test_sentence + "')"
]
}
],
"metadata": {},
"nbformat": 4,
"nbformat_minor": 4
}
with open(self.notebook_filename, 'w') as notebook:
notebook.write(json.dumps(notebook_source))
def tearDown(self):
os.remove(self.notebook_filename)
if os.path.exists(self.converted_notebook):
os.remove(self.converted_notebook)
super().tearDown()
def test(self):
conversion_output = subprocess.check_output([
os.path.join(
self.computer_partition_root_path,
'software_release',
'bin',
'jupyter-nbconvert',
),
'--execute',
'--to',
'notebook',
self.notebook_filename,
], stderr=subprocess.STDOUT, text=True)
self.assertIn(
'[NbConvertApp] Converting notebook %s to notebook' % self.notebook_filename,
conversion_output,
)
self.assertRegex(
conversion_output,
r'\[NbConvertApp\] Writing \d+ bytes to %s' % self.converted_notebook
)
self.assertTrue(os.path.exists(self.converted_notebook))
with open(self.converted_notebook) as json_result:
self.assertEqual(
json.loads(json_result.read())['cells'][0]['outputs'][0]['text'][0],
self.test_sentence + '\n',
)
......@@ -137,13 +137,20 @@ zc.buildout = 2.7.1+slapos019
zc.recipe.egg = 2.0.3+slapos003
apache-libcloud = 2.4.0
argon2-cffi = 20.1.0
asn1crypto = 1.3.0
astor = 0.5
async-generator = 1.10
atomicwrites = 1.4.0
atomize = 0.2.0
attrs = 22.1.0
backcall = 0.2.0
backports-abc = 0.5
backports.functools-lru-cache = 1.6.1:whl
backports.lzma = 0.0.14
backports.shutil-get-terminal-size = 1.0.0
bcrypt = 3.1.4
bleach = 5.0.1
CacheControl = 0.12.6:whl
certifi = 2022.6.15
cffi = 1.14.0
......@@ -160,10 +167,13 @@ croniter = 0.3.25
cryptography = 3.3.2
dateparser = 0.7.6
decorator = 4.3.0
defusedxml = 0.6.0
distro = 1.7.0
dnspython = 1.16.0
entrypoints = 0.3
enum34 = 1.1.10
erp5.util = 0.4.74
et-xmlfile = 1.0.1
feedparser = 5.2.1
Flask = 1.1.2
funcsigs = 1.0.2
......@@ -173,42 +183,74 @@ geventmp = 0.0.1
gitdb2 = 2.0.5
GitPython = 2.1.11
greenlet = 0.4.17
h5py = 2.7.1
idna = 2.9
igmp = 1.0.4
Importing = 1.10
importlib-metadata = 1.7.0:whl
inotify-simple = 1.1.1
ipaddress = 1.0.23
ipykernel = 5.3.4:whl
ipython = 7.16.3
ipython-genutils = 0.1.0
ipywidgets = 6.0.0
itsdangerous = 0.24
jdcal = 1.4
jedi = 0.17.2
Jinja2 = 2.11.3
jsonschema = 3.0.2:whl
jupyter = 1.0.0
jupyter-client = 7.3.1
jupyter-console = 6.4.4
jupyter-core = 4.9.2
jupyterlab = 0.26.3
jupyterlab-launcher = 0.3.1
jupyterlab-pygments = 0.1.2
lock-file = 2.0
lockfile = 0.12.2:whl
lxml = 4.9.1
MarkupSafe = 2.0.1
matplotlib = 2.1.2
meld3 = 1.0.2
mistune = 0.8.4
mock = 3.0.5
more-itertools = 5.0.0
mpmath = 1.0.0
msgpack = 0.6.2
nbclient = 0.5.1
nbconvert = 6.0.7
nbformat = 5.0.8
nest-asyncio = 1.5.6
netaddr = 0.7.19
netifaces = 0.10.7
notebook = 6.1.5
openpyxl = 2.5.2
packaging = 16.8
pandocfilters = 1.4.3
paramiko = 2.11.0
parso = 0.7.1
passlib = 1.7.1
pathlib2 = 2.3.5
patsy = 0.5.1
pbr = 2.0.0
pexpect = 4.8.0
pickleshare = 0.7.4
pim-dm = 1.4.0nxd001
pkgconfig = 1.5.1
plone.recipe.command = 1.1
pluggy = 0.13.1:whl
ply = 3.11
prettytable = 0.7.2
prometheus-client = 0.9.0
prompt-toolkit = 3.0.19
psutil = 5.8.0
ptyprocess = 0.5.1
py = 1.11.0:whl
py-mld = 1.0.3
pyasn1 = 0.4.5
pycparser = 2.20
pycurl = 7.43.0
Pygments = 2.9.0
PyNaCl = 1.3.0
pyOpenSSL = 19.1.0
pyparsing = 3.0.9:whl
......@@ -219,13 +261,20 @@ pytest-runner = 5.2:whl
python-dateutil = 2.8.2:whl
pytz = 2022.2.1
PyYAML = 5.4.1
pyzmq = 22.3.0
qtconsole = 4.3.0
regex = 2020.9.27
requests = 2.28.1
rpdb = 0.1.5
rubygemsrecipe = 0.4.3
scandir = 1.10.0
scikit-learn = 0.20.4
seaborn = 0.7.1
Send2Trash = 1.5.0
setproctitle = 1.1.10
setuptools-dso = 1.7
simplegeneric = 0.8.1
singledispatch = 3.4.0.3
six = 1.16.0
slapos.cookbook = 1.0.297
slapos.core = 1.8.5
......@@ -236,19 +285,27 @@ slapos.recipe.build = 0.56
slapos.recipe.cmmi = 0.19
slapos.recipe.template = 5.0
slapos.toolbox = 0.128
statsmodels = 0.11.1
smmap2 = 2.0.5
stevedore = 1.21.0:whl
subprocess32 = 3.5.4
supervisor = 4.1.0
traitlets = 4.3.3
sympy = 1.1.1
terminado = 0.9.1
testpath = 0.4.4
tornado = 6.1
traitlets = 5.0.5
tzlocal = 1.5.1
unicodecsv = 0.14.1
uritemplate = 3.0.0
urllib3 = 1.26.12
wcwidth = 0.2.5
webencodings = 0.5.1
Werkzeug = 2.0.2
wheel = 0.35.1:whl
widgetsnbextension = 2.0.0
xml-marshaller = 1.0.2
xlrd = 1.1.0
zc.lockfile = 1.4
ZConfig = 3.6.1
zdaemon = 4.2.0
......
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