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Commit 8fbd9152 authored by Roque Porchetto's avatar Roque Porchetto
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Moving external methods to portal_components

parent 665f62f7
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Showing with 287 additions and 1 deletion
bt5/erp5_wendelin_telecom_ingestion/ExtensionTemplateItem/portal_components/external_process_raw_data.py 0 → 100644
View file @ 8fbd9152
import os
import mne
import json
from Products.ERP5Type.Log import log
def getMetadata(raw_info):
dict = { 'filename': raw_info['filename'],
'nchan': raw_info['nchan'],
'ch_names': raw_info['ch_names'],
'sfreq': raw_info['sfreq']
}
return json.dumps(dict)
def processRawData(data_stream, data_array, data_stream_metadata):
try:
data_stream_content = data_stream.getData()
raw_file = "ernoise_raw.fif"
with open(raw_file, 'wb') as file:
file.write(data_stream_content)
raw = mne.io.read_raw_fif(raw_file, preload=True)
data_array.setArray(raw._data)
log("Data Array array: " + str(data_array.getArray()))
metadata = getMetadata(raw.info)
data_stream_metadata.appendData(metadata)
log("Data Stream metadata: " + str(data_stream_metadata.getData()))
os.remove(raw_file)
return "Raw data processed."
except Exception, e:
return "Error while processing raw data: " + str(e)
\ No newline at end of file
bt5/erp5_wendelin_telecom_ingestion/ExtensionTemplateItem/portal_components/external_process_raw_data.xml 0 → 100644
View file @ 8fbd9152
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Extension Component" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>_recorded_property_dict</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
<item>
<key> <string>default_reference</string> </key>
<value> <string>external_process_raw_data</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>external_process_raw_data</string> </value>
</item>
<item>
<key> <string>language</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Extension Component</string> </value>
</item>
<item>
<key> <string>sid</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>text_content_error_message</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>text_content_warning_message</string> </key>
<value>
<tuple>
<string>W: 19, 0: Bad indentation. Found 8 spaces, expected 6 (bad-indentation)</string>
<string>W: 7, 2: Redefining built-in \'dict\' (redefined-builtin)</string>
<string>W: 18, 33: Redefining built-in \'file\' (redefined-builtin)</string>
</tuple>
</value>
</item>
<item>
<key> <string>version</string> </key>
<value> <string>erp5</string> </value>
</item>
<item>
<key> <string>workflow_history</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary/>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary>
<item>
<key> <string>component_validation_workflow</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAQ=</string> </persistent>
</value>
</item>
</dictionary>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="4" aka="AAAAAAAAAAQ=">
<pickle>
<global name="WorkflowHistoryList" module="Products.ERP5Type.patches.WorkflowTool"/>
</pickle>
<pickle>
<tuple>
<none/>
<list>
<dictionary>
<item>
<key> <string>action</string> </key>
<value> <string>validate</string> </value>
</item>
<item>
<key> <string>validation_state</string> </key>
<value> <string>validated</string> </value>
</item>
</dictionary>
</list>
</tuple>
</pickle>
</record>
</ZopeData>
bt5/erp5_wendelin_telecom_ingestion/ExtensionTemplateItem/portal_components/unit_test_external.py 0 → 100644
View file @ 8fbd9152
import transaction
import time
import mne
def generateRawData(array):
info = mne.create_info(
ch_names=['MEG1', 'MEG2', 'EEG1', 'EEG2', 'EOG'],
ch_types=['grad', 'grad', 'eeg', 'eeg', 'eog'],
sfreq=100)
info = mne.create_info(array.shape[0],array.shape[1])
raw = mne.io.RawArray(array, info)
raw.save("test_raw_data.fif", overwrite=True)
with open("test_raw_data.fif", "rb") as file:
content = file.read()
return content
bt5/erp5_wendelin_telecom_ingestion/ExtensionTemplateItem/portal_components/unit_test_external.xml 0 → 100644
View file @ 8fbd9152
<?xml version="1.0"?>
<ZopeData>
<record id="1" aka="AAAAAAAAAAE=">
<pickle>
<global name="Extension Component" module="erp5.portal_type"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>default_reference</string> </key>
<value> <string>unit_test_external</string> </value>
</item>
<item>
<key> <string>description</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>id</string> </key>
<value> <string>unit_test_external</string> </value>
</item>
<item>
<key> <string>portal_type</string> </key>
<value> <string>Extension Component</string> </value>
</item>
<item>
<key> <string>sid</string> </key>
<value>
<none/>
</value>
</item>
<item>
<key> <string>text_content_error_message</string> </key>
<value>
<tuple/>
</value>
</item>
<item>
<key> <string>text_content_warning_message</string> </key>
<value>
<tuple>
<string>W: 13, 42: Redefining built-in \'file\' (redefined-builtin)</string>
<string>W: 1, 0: Unused import transaction (unused-import)</string>
<string>W: 2, 0: Unused import time (unused-import)</string>
</tuple>
</value>
</item>
<item>
<key> <string>version</string> </key>
<value> <string>erp5</string> </value>
</item>
<item>
<key> <string>workflow_history</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAI=</string> </persistent>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="2" aka="AAAAAAAAAAI=">
<pickle>
<global name="PersistentMapping" module="Persistence.mapping"/>
</pickle>
<pickle>
<dictionary>
<item>
<key> <string>data</string> </key>
<value>
<dictionary>
<item>
<key> <string>component_validation_workflow</string> </key>
<value>
<persistent> <string encoding="base64">AAAAAAAAAAM=</string> </persistent>
</value>
</item>
</dictionary>
</value>
</item>
</dictionary>
</pickle>
</record>
<record id="3" aka="AAAAAAAAAAM=">
<pickle>
<global name="WorkflowHistoryList" module="Products.ERP5Type.patches.WorkflowTool"/>
</pickle>
<pickle>
<tuple>
<none/>
<list>
<dictionary>
<item>
<key> <string>action</string> </key>
<value> <string>validate</string> </value>
</item>
<item>
<key> <string>validation_state</string> </key>
<value> <string>validated</string> </value>
</item>
</dictionary>
</list>
</tuple>
</pickle>
</record>
</ZopeData>
bt5/erp5_wendelin_telecom_ingestion/SkinTemplateItem/portal_skins/erp5_wendelin_telecom/processRawData.xml
View file @ 8fbd9152
......@@ -12,7 +12,7 @@
</item>
<item>
<key> <string>_module</string> </key>
<value> <string>external</string> </value>
<value> <string>external_process_raw_data</string> </value>
</item>
<item>
<key> <string>id</string> </key>
......
bt5/erp5_wendelin_telecom_ingestion/bt/template_extension_id_list 0 → 100644
View file @ 8fbd9152
external_process_raw_data
unit_test_external
\ No newline at end of file
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