With some architectures like ppc64, set_pmd_at() cannot cope with a
situation where there is already some (different) valid entry present.

Use pmdp_set_access_flags() instead to modify the pfn which is built to
deal with modifying existing PMD entries.

This is similar to commit cae85cb8 ("mm/memory.c: fix modifying of
page protection by insert_pfn()")

We also do similar update w.r.t insert_pfn_pud eventhough ppc64 don't
support pud pfn entries now.

Without this patch we also see the below message in kernel log "BUG:
non-zero pgtables_bytes on freeing mm:"

Link: http://lkml.kernel.org/r/20190402115125.18803-1-aneesh.kumar@linux.ibm.comSigned-off-by: Aneesh Kumar K.V <aneesh.kumar@linux.ibm.com>
Reported-by: Chandan Rajendra <chandan@linux.ibm.com>
Reviewed-by: Jan Kara <jack@suse.cz>
Cc: Dan Williams <dan.j.williams@intel.com>
Cc: <stable@vger.kernel.org>
Signed-off-by: Andrew Morton <akpm@linux-foundation.org>
Signed-off-by: Linus Torvalds <torvalds@linux-foundation.org>