Resolve "Web IDE Status Bar is broken when System footer is present"

Closes #6305

See merge request gitlab-org/gitlab-ee!5975

Resolve "Breadcrumb hidden by system message"

Closes #6313

See merge request gitlab-org/gitlab-ee!5997

Rename Secret variables -> variables

Closes gitlab-ce#38479

See merge request gitlab-org/gitlab-ee!5933

[EE-Port] GraphQL setup: Basic Project and Merge request endpoint

See merge request gitlab-org/gitlab-ee!5969

Add .NET to what's supported by SAST

See merge request gitlab-org/gitlab-ee!5979

- All definitions have been replaced by classes:
  http://graphql-ruby.org/schema/class_based_api.html
- Authorization & Presentation have been refactored to work in the
  class based system
- Loaders have been replaced by resolvers
- Times are now coersed as ISO 8601

Pipeline index performance improvements / EE

See merge request gitlab-org/gitlab-ee!5818

Show status information stale icon in Geo admin dashboard

Closes #4909

See merge request gitlab-org/gitlab-ee!5653

 Conflicts:
   app/models/ci/pipeline.rb

Extract EE specific files/lines for app/controllers/groups

Closes #5941

See merge request gitlab-org/gitlab-ee!5947

Fix MR tabs bottom border (EE)

See merge request gitlab-org/gitlab-ee!5982

CE upstream - 2018-06-04 14:04 UTC

Closes #3691

See merge request gitlab-org/gitlab-ee!5962

This allows us to report JSON parse exceptions to clients and ignore
them in sentry.

By specifying a presenter for the object type, we can keep the logic
out of `GitlabSchema`.

The presenter gets initialized using the object being presented, and
the context (including the `current_user`).

0af2ab18 decoubled the `to_param`
behavior from `AtomicInternalId`, but this model was forgotten.

Add License Management results in the MR widget

Closes #5487

See merge request gitlab-org/gitlab-ee!5521

Resolve "Geo exposes repository storage paths in HTTP API"

Closes #5380

See merge request gitlab-org/gitlab-ee!5792

# Conflicts:
#   db/schema.rb

Resolve "Merge Request > Security Reports > Vulnerability Modal broken with Bootstrap 4 update"

Closes #6228

See merge request gitlab-org/gitlab-ee!5972

Resolve "Extract EE specific files/lines for some service objects"

Closes #6021

See merge request gitlab-org/gitlab-ee!5796

Exclude Guest users or users without a membership from seats count for Ultimate plan

Closes #5693

See merge request gitlab-org/gitlab-ee!5816

Render a 403 when showing an access denied message

Closes #6259

See merge request gitlab-org/gitlab-ee!5964

Fix Fog mocking (EE)

Closes gitlab-ce#47300

See merge request gitlab-org/gitlab-ee!5977

(EE port) Rephrase Merge Request Maintainer Edit

See merge request gitlab-org/gitlab-ee!5831